Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03923 Sequoiadendron giganteum HOM05D002566 ORTHO05D002897 3.6e-73 278.1 135 100.0
SEGI_32528 Sequoiadendron giganteum HOM05D002566 ORTHO05D002897 1.1e-26 123.6 62 91.9
SEGI_25959 Sequoiadendron giganteum HOM05D002566 ORTHO05D002897 1.8e-11 73.2 62 50.0
HPP92_008229 Vanilla planifolia HOM05D002566 ORTHO05D002897 5.1e-11 71.6 62 43.5
CiPaw.15G138100 Carya illinoinensis HOM05D002566 ORTHO05D002897 1.5e-10 70.1 62 46.8
HPP92_008205 Vanilla planifolia HOM05D000230 ORTHO05D000176 1.5e-10 70.1 62 41.9
PGR044G0031 Punica granatum HOM05D002566 ORTHO05D002897 2.5e-10 69.3 62 46.8
Lj6A751T56 Lonicera japonica HOM05D002566 ORTHO05D002897 4.3e-10 68.6 62 46.8
QL10p027008 Quercus lobata HOM05D002566 ORTHO05D002897 4.3e-10 68.6 62 46.8
TWI60G0135 Tripterygium wilfordii HOM05D002566 ORTHO05D002897 4.3e-10 68.6 62 45.2
Eucgr.K02241 Eucalyptus grandis HOM05D002566 ORTHO05D002897 5.6e-10 68.2 61 45.9
Sc11g0003940 Simmondsia chinensis HOM05D002566 ORTHO05D002897 9.6e-10 67.4 62 45.2
Ah.07g207710 Amaranthus hybridus HOM05D002566 ORTHO05D002897 1.3e-09 67.0 65 46.2
FAN18G0079 Fragaria x ananassa HOM05D002566 ORTHO05D002897 1.3e-09 67.0 69 43.5
Os01g0502400 Oryza sativa ssp. japonica HOM05D002566 ORTHO05D002897 1.3e-09 67.0 62 45.2
Ca_25462_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 1.6e-09 66.6 62 43.5
Dinv04914 Davidia involucrata HOM05D002566 ORTHO05D002897 1.6e-09 66.6 62 43.5
Potri.008G125800 Populus trichocarpa HOM05D002566 ORTHO05D002897 1.6e-09 66.6 61 45.9
Zm00001eb132300 Zea mays HOM05D002566 ORTHO05D002897 1.6e-09 66.6 62 41.9
ClCG01G005980 Citrullus lanatus HOM05D002566 ORTHO05D002897 2.1e-09 66.2 62 46.8
FAN04G0873 Fragaria x ananassa HOM05D002566 ORTHO05D002897 2.1e-09 66.2 69 43.5
FAN08G0697 Fragaria x ananassa HOM05D002566 ORTHO05D002897 2.1e-09 66.2 69 43.5
FAN13G2250 Fragaria x ananassa HOM05D002566 ORTHO05D002897 2.1e-09 66.2 69 43.5
Glyma.07G099600 Glycine max HOM05D002566 ORTHO05D002897 2.1e-09 66.2 62 43.5
RcHm_v2.0_Chr7g0179241 Rosa chinensis HOM05D002566 ORTHO05D002897 2.1e-09 66.2 69 43.5
Sabra08G0094800 Salix brachista HOM05D002566 ORTHO05D002897 2.1e-09 66.2 61 45.9
vmacro10612 Vaccinium macrocarpon HOM05D002566 ORTHO05D002897 2.1e-09 66.2 62 41.9
Cfa015822 Carpinus fangiana HOM05D002566 ORTHO05D002897 2.8e-09 65.9 62 43.5
MELO3C005334.2 Cucumis melo HOM05D002566 ORTHO05D002897 2.8e-09 65.9 62 45.2
CsaV3_5G028700 Cucumis sativus L. HOM05D002566 ORTHO05D002897 2.8e-09 65.9 62 45.2
Dinv16156 Davidia involucrata HOM05D002566 ORTHO05D002897 2.8e-09 65.9 62 41.9
Psat1g034200 Pisum sativum HOM05D002566 ORTHO05D002897 2.8e-09 65.9 62 41.9
Actinidia14932 Actinidia chinensis HOM05D002566 ORTHO05D002897 3.7e-09 65.5 62 41.9
Actinidia16694 Actinidia chinensis HOM05D002566 ORTHO05D002897 3.7e-09 65.5 62 41.9
CDE07G0021 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 3.7e-09 65.5 61 41.0
Manes.01G016000 Manihot esculenta HOM05D002566 ORTHO05D002897 3.7e-09 65.5 62 41.9
Nn4g24005 Nelumbo nucifera HOM05D002566 ORTHO05D002897 3.7e-09 65.5 62 40.3
TPR.G4825 Trifolium pratense HOM05D002566 ORTHO05D002897 3.7e-09 65.5 68 41.2
Atru.chr9.930 Acer truncatum HOM05D002566 ORTHO05D002897 4.8e-09 65.1 62 43.5
Hma1.2p1_0114F.1_g055530 Hydrangea macrophylla HOM05D002566 ORTHO05D002897 4.8e-09 65.1 62 41.9
Medtr1g109230 Medicago truncatula HOM05D002566 ORTHO05D002897 4.8e-09 65.1 68 41.2
Medtr6g081860 Medicago truncatula HOM05D002566 ORTHO05D002897 4.8e-09 65.1 62 40.3
Ciclev10008539m.g Citrus clementina HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 40.3
HanXRQChr15g0477761 Helianthus annuus HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 43.5
Hma1.2p1_0882F.1_g232220 Hydrangea macrophylla HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 41.9
Lj5g0020697 Lotus japonicus HOM05D002566 ORTHO05D002897 6.2e-09 64.7 69 42.0
Phvul.004G152800 Phaseolus vulgaris HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 43.5
Psat6g223600 Pisum sativum HOM05D002566 ORTHO05D002897 6.2e-09 64.7 68 41.2
Sed0022179 Sechium edule HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 46.8
VMungo0464G0984 Vigna mungo HOM05D002566 ORTHO05D002897 6.2e-09 64.7 62 43.5
CDE06G1193 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 8.2e-09 64.3 62 40.3
COL.COLO4_26850 Corchorus olitorius HOM05D002566 ORTHO05D002897 8.2e-09 64.3 62 41.9
PSO782G4436 Papaver somniferum HOM05D002566 ORTHO05D002897 8.2e-09 64.3 61 42.6
SMO334G0067 Selaginella moellendorffii HOM05D002566 ORTHO05D002897 1.1e-08 63.9 77 41.6
Solyc05g008610.3 Solanum lycopersicum HOM05D002566 ORTHO05D002897 1.1e-08 63.9 62 40.3
Sopen05g004450 Solanum pennellii HOM05D002566 ORTHO05D002897 1.1e-08 63.9 62 40.3
PGSC0003DMG400030519 Solanum tuberosum HOM05D002566 ORTHO05D002897 1.1e-08 63.9 62 40.3
Glyma.09G179300 Glycine max HOM05D002566 ORTHO05D002897 1.4e-08 63.5 62 41.9
Nitab4.5_0000350g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.4e-08 63.5 62 41.9
Nitab4.5_0003886g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.4e-08 63.5 62 41.9
THA.LOC104820375 Tarenaya hassleriana HOM05D002566 ORTHO05D002897 1.4e-08 63.5 62 41.9
CANSAT80G1736 Cannabis sativa HOM05D002566 ORTHO05D002897 1.8e-08 63.2 87 34.5
CiPaw.06G015300 Carya illinoinensis HOM05D002566 ORTHO05D002897 1.8e-08 63.2 69 42.0
Duzib192G0889 Durio zibethinus HOM05D002566 ORTHO05D002897 1.8e-08 63.2 62 43.5
Hund13806 Selenicereus undatus HOM05D002566 ORTHO05D002897 1.8e-08 63.2 62 43.5
Mapoly0046s0031 Marchantia polymorpha HOM05D002566 ORTHO05D002897 2.4e-08 62.8 72 41.7
Rhsim09G0102400 Rhododendron simsii HOM05D002566 ORTHO05D002897 2.4e-08 62.8 56 44.6
Cpa.g.sc65.82 Carica papaya HOM05D002566 ORTHO05D002897 3.1e-08 62.4 61 42.6
Gohir.A03G079900 Gossypium hirsutum HOM05D002566 ORTHO05D002897 3.1e-08 62.4 62 41.9
Peaxi162Scf00205g01133 Petunia axillaris HOM05D002566 ORTHO05D002897 3.1e-08 62.4 62 41.9
Sabra15G0042200 Salix brachista HOM05D002566 ORTHO05D002897 3.1e-08 62.4 64 39.1
CSS0039889 Camellia sinensis var. sinensis HOM05D002566 ORTHO05D002897 4.0e-08 62.0 62 38.7
Cfa019720 Carpinus fangiana HOM05D002566 ORTHO05D002897 4.0e-08 62.0 62 43.5
Cc11_g09340 Coffea canephora HOM05D002566 ORTHO05D002897 4.0e-08 62.0 81 33.3
Gorai.005G118000 Gossypium raimondii HOM05D002566 ORTHO05D002897 4.0e-08 62.0 62 41.9
TAR371G0265 Trochodendron aralioides HOM05D002566 ORTHO05D002897 4.0e-08 62.0 62 40.3
Cpa.g.sc3.452 Carica papaya HOM05D002566 ORTHO05D002897 5.3e-08 61.6 56 44.6
Gohir.D02G103900 Gossypium hirsutum HOM05D002566 ORTHO05D002897 5.3e-08 61.6 62 41.9
Peaxi162Scf00189g01217 Petunia axillaris HOM05D002566 ORTHO05D002897 5.3e-08 61.6 77 35.1
Thecc.06G003400 Theobroma cacao HOM05D002566 ORTHO05D002897 5.3e-08 61.6 62 40.3
CDE04G1760 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 6.9e-08 61.2 63 41.3
Duzib160G0102 Durio zibethinus HOM05D002566 ORTHO05D002897 6.9e-08 61.2 62 40.3
Thhalv10007812m.g Eutrema salsugineum HOM05D002566 ORTHO05D002897 6.9e-08 61.2 61 41.0
Lj3A878T23 Lonicera japonica HOM05D002566 ORTHO05D002897 6.9e-08 61.2 61 41.0
Potri.015G043100 Populus trichocarpa HOM05D002566 ORTHO05D002897 6.9e-08 61.2 61 39.3
Sabra15G0043600 Salix brachista HOM05D002566 ORTHO05D002897 6.9e-08 61.2 61 39.3
Atru.chr11.321 Acer truncatum HOM05D002566 ORTHO05D002897 9.0e-08 60.8 61 42.6
A03p40580 Brassica napus HOM05D002566 ORTHO05D002897 9.0e-08 60.8 62 40.3
BraA03t13215Z Brassica rapa HOM05D002566 ORTHO05D002897 9.0e-08 60.8 62 40.3
Carub.0003s1796 Capsella rubella HOM05D002566 ORTHO05D002897 9.0e-08 60.8 62 38.7
Lsat_1_v5_gn_3_56640 Lactuca sativa HOM05D002566 ORTHO05D002897 9.0e-08 60.8 62 40.3
PGR102G0233 Punica granatum HOM05D002566 ORTHO05D002897 9.0e-08 60.8 63 44.4
QL01p003157 Quercus lobata HOM05D002566 ORTHO05D002897 9.0e-08 60.8 71 42.3
Haze_00673 Corylus avellana HOM05D002566 ORTHO05D002897 1.2e-07 60.5 55 45.5
Haze_18765 Corylus avellana HOM05D002566 ORTHO05D002897 1.2e-07 60.5 56 44.6
Gohir.D06G124800 Gossypium hirsutum HOM05D002566 ORTHO05D002897 1.2e-07 60.5 62 41.9
Gorai.010G144300 Gossypium raimondii HOM05D002566 ORTHO05D002897 1.2e-07 60.5 62 41.9
HanXRQChr17g0553111 Helianthus annuus HOM05D002566 ORTHO05D002897 1.2e-07 60.5 61 41.0
Psat0s3112g0080 Pisum sativum HOM05D002566 ORTHO05D000124 1.2e-07 60.5 55 47.3
SalBow8G4881 Salvia bowleyana HOM05D002566 ORTHO05D002897 1.2e-07 60.5 84 33.3
BcaB04g18982 Brassica carinata HOM05D002566 ORTHO05D002897 1.5e-07 60.1 62 38.7
Migut.L01013 Erythranthe guttata HOM05D002566 ORTHO05D002897 1.5e-07 60.1 78 34.6
TAR622G1349 Trochodendron aralioides HOM05D002566 ORTHO05D002897 1.5e-07 60.1 62 38.7
EL10Ac3g05853 Beta vulgaris HOM05D002566 ORTHO05D002897 2.0e-07 59.7 64 42.2
BcaB07g32293 Brassica carinata HOM05D002566 ORTHO05D002897 2.6e-07 59.3 61 37.7
CAN.G1489.21 Capsicum annuum HOM05D002566 ORTHO05D002897 2.6e-07 59.3 80 35.0
Eucgr.B02862 Eucalyptus grandis HOM05D002566 ORTHO05D002897 2.6e-07 59.3 63 44.4
Glyma.20G122400 Glycine max HOM05D002566 ORTHO05D002897 2.6e-07 59.3 69 36.2
Potri.012G051200 Populus trichocarpa HOM05D002566 ORTHO05D002897 2.6e-07 59.3 61 37.7
GSVIVG01011812001 Vitis vinifera HOM05D002566 ORTHO05D002897 2.6e-07 59.3 61 41.0
AT3G18210 Arabidopsis thaliana HOM05D002566 ORTHO05D002897 3.4e-07 58.9 62 37.1
DCAR_007273 Daucus carota HOM05D002566 ORTHO05D002897 3.4e-07 58.9 61 39.3
MD13G1033500 Malus domestica HOM05D002566 ORTHO05D002897 3.4e-07 58.9 88 35.2
Aa31LG8G5050 Aethionema arabicum HOM05D002566 ORTHO05D002897 4.5e-07 58.5 62 37.1
CARHR093540 Cardamine hirsuta HOM05D002566 ORTHO05D002897 4.5e-07 58.5 62 35.5
ECA246G0785 Erigeron canadensis HOM05D002566 ORTHO05D002897 4.5e-07 58.5 63 39.7
MD16G1035400 Malus domestica HOM05D002566 ORTHO05D002897 4.5e-07 58.5 88 35.2
ATR0589G011 Amborella trichopoda HOM05D002566 ORTHO05D002897 5.8e-07 58.2 63 42.9
AT1G22950 Arabidopsis thaliana HOM05D002566 ORTHO05D002897 5.8e-07 58.2 61 41.0
arahy.Tifrunner.gnm1.ann1.KWLE9P Arachis hypogaea HOM05D002566 ORTHO05D002897 5.8e-07 58.2 62 37.1
MSTRG.7634 Avicennia marina HOM05D002566 ORTHO05D002897 5.8e-07 58.2 62 37.1
BcaC05g26201 Brassica carinata HOM05D002566 ORTHO05D002897 5.8e-07 58.2 61 37.7
C05p22090 Brassica napus HOM05D002566 ORTHO05D002897 5.8e-07 58.2 61 37.7
BolC5t30905H Brassica oleracea HOM05D002566 ORTHO05D002897 5.8e-07 58.2 61 37.7
Cpa.g.sc65.84 Carica papaya HOM05D002566 ORTHO05D002897 5.8e-07 58.2 61 39.3
Phvul.007G033700 Phaseolus vulgaris HOM05D002566 ORTHO05D002897 5.8e-07 58.2 69 34.8
Prupe.1G319300 Prunus persica HOM05D002566 ORTHO05D002897 5.8e-07 58.2 87 35.6
VMungo0720G2199 Vigna mungo HOM05D002566 ORTHO05D002897 5.8e-07 58.2 69 34.8
AL1G36510 Arabidopsis lyrata HOM05D002566 ORTHO05D002897 7.6e-07 57.8 61 41.0
AL3G31400 Arabidopsis lyrata HOM05D002566 ORTHO05D002897 7.6e-07 57.8 62 35.5
C03p49390 Brassica napus HOM05D002566 ORTHO05D002897 7.6e-07 57.8 62 37.1
BolC3t17233H Brassica oleracea HOM05D002566 ORTHO05D002897 7.6e-07 57.8 62 37.1
DCAR_011030 Daucus carota HOM05D002566 ORTHO05D002897 7.6e-07 57.8 62 37.1
unitig_0.g2338 Utricularia gibba HOM05D002566 ORTHO05D002897 7.6e-07 57.8 56 42.9
A09p41790 Brassica napus HOM05D002566 ORTHO05D002897 1.0e-06 57.4 61 37.7
BraA09t39667Z Brassica rapa HOM05D002566 ORTHO05D002897 1.0e-06 57.4 61 37.7
Glyma.10G268700 Glycine max HOM05D002566 ORTHO05D002897 1.0e-06 57.4 68 35.3
Nitab4.5_0002156g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.0e-06 57.4 78 34.6
Carub.0001s2245 Capsella rubella HOM05D002566 ORTHO05D002897 1.3e-06 57.0 61 39.3
Nitab4.5_0001861g0180 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.7e-06 56.6 78 34.6
Sp1g20410 Schrenkiella parvula HOM05D002566 ORTHO05D002897 1.7e-06 56.6 61 37.7
arahy.Tifrunner.gnm1.ann1.G05VUU Arachis hypogaea HOM05D002566 ORTHO05D002897 2.2e-06 56.2 62 33.9
arahy.Tifrunner.gnm1.ann1.X5S011 Arachis hypogaea HOM05D002566 ORTHO05D002897 2.2e-06 56.2 62 33.9
BcaC01g03705 Brassica carinata HOM05D002566 ORTHO05D002897 2.2e-06 56.2 62 35.5
CARHR023330 Cardamine hirsuta HOM05D002566 ORTHO05D002897 2.2e-06 56.2 65 36.9
Glyma.10G268600 Glycine max HOM05D002566 ORTHO05D002897 2.2e-06 56.2 69 34.8
HanXRQChr17g0567111 Helianthus annuus HOM05D002566 ORTHO05D002897 2.2e-06 56.2 62 37.1
arahy.Tifrunner.gnm1.ann1.Y1J3AA Arachis hypogaea HOM05D002566 ORTHO05D002897 2.9e-06 55.8 60 40.0
Thhalv10020957m.g Eutrema salsugineum HOM05D002566 ORTHO05D002897 2.9e-06 55.8 62 33.9
Ca_11120_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 3.8e-06 55.5 68 33.8
Ca_17230_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 3.8e-06 55.5 82 36.6
HanXRQChr16g0529551 Helianthus annuus HOM05D002566 ORTHO05D002897 3.8e-06 55.5 53 41.5
HanXRQChr16g0529561 Helianthus annuus HOM05D002566 ORTHO05D002897 3.8e-06 55.5 53 41.5
Lalb_Chr22g0353291 Lupinus albus HOM05D002566 ORTHO05D002897 3.8e-06 55.5 61 41.0
PSO170G3059 Papaver somniferum HOM05D002566 ORTHO05D002897 3.8e-06 55.5 62 35.5
SGA_v2.0_scaffold50G18553 Striga asiatica HOM05D002566 ORTHO05D002897 3.8e-06 55.5 62 37.1
Lalb_Chr02g0145681 Lupinus albus HOM05D002566 ORTHO05D002897 6.5e-06 54.7 61 29.5
Sp3g16320 Schrenkiella parvula HOM05D002566 ORTHO05D002897 6.5e-06 54.7 62 32.3
FAN07G1285 Fragaria x ananassa HOM05D002566 ORTHO05D002897 8.4e-06 54.3 63 38.1
VMungo0720G1380 Vigna mungo HOM05D002566 ORTHO05D002897 8.4e-06 54.3 69 30.4


User provided reference genes

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