Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 3.5e-92 341.7 179 100.0
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.6e-60 236.5 178 70.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 4.6e-60 235.0 178 70.8
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.6e-60 235.0 177 71.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.8e-59 233.0 177 70.6
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.1e-59 231.5 178 69.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 6.7e-59 231.1 171 71.3
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 8.7e-59 230.7 177 70.1
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.5e-58 229.9 170 71.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.5e-58 229.9 176 68.2
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.9e-58 229.6 174 69.5
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.9e-58 229.6 177 68.9
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.9e-58 229.6 172 70.3
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.9e-58 229.6 177 70.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.5e-58 229.2 171 71.3
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 2.5e-58 229.2 176 68.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.3e-58 228.8 178 66.3
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 4.3e-58 228.4 177 66.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 5.7e-58 228.0 170 70.6
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.7e-58 228.0 176 68.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.7e-58 228.0 176 68.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 7.4e-58 227.6 174 68.4
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 7.4e-58 227.6 177 69.5
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 9.6e-58 227.3 179 70.4
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 9.6e-58 227.3 170 70.0
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 9.6e-58 227.3 169 69.2
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.3e-57 226.9 176 64.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.6e-57 226.5 178 69.1
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.8e-57 225.7 178 66.9
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.7e-57 225.3 178 66.9
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.7e-57 225.3 180 65.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.7e-57 225.3 180 65.6
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 4.8e-57 224.9 177 68.9
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 8.2e-57 224.2 156 73.7
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.4e-56 223.4 171 69.0
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.4e-56 223.4 172 66.9
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.8e-56 223.0 171 66.1
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-56 223.0 171 66.1
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.8e-56 223.0 175 65.1
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.8e-56 223.0 175 65.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 2.4e-56 222.6 176 65.9
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 2.4e-56 222.6 139 76.3
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 2.4e-56 222.6 178 65.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.0e-56 221.9 173 68.2
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 5.3e-56 221.5 175 65.1
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 9.0e-56 220.7 172 66.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-55 220.3 171 65.5
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.2e-55 220.3 171 65.5
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.2e-55 220.3 177 67.8
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.5e-55 219.9 172 66.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.0e-55 219.5 178 64.0
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.4e-55 218.8 170 67.1
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.4e-55 218.8 173 67.6
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.4e-55 218.8 173 67.6
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.8e-55 218.0 172 68.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 5.8e-55 218.0 174 67.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 7.6e-55 217.6 173 67.1
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 7.6e-55 217.6 173 67.1
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.6e-55 217.6 173 67.1
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.0e-54 217.2 167 68.3
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.0e-54 217.2 179 65.9
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.3e-54 216.9 175 65.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-54 216.5 176 63.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.7e-54 216.5 176 61.9
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.7e-54 216.5 173 66.5
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 2.2e-54 216.1 176 64.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 2.2e-54 216.1 166 68.7
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 3.8e-54 215.3 174 63.2
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.0e-54 214.9 173 66.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.0e-54 214.9 180 63.9
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 6.5e-54 214.5 182 62.6
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 6.5e-54 214.5 178 62.9
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 6.5e-54 214.5 178 64.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 6.5e-54 214.5 179 64.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 6.5e-54 214.5 172 65.1
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 8.4e-54 214.2 176 65.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-53 213.8 173 66.5
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.1e-53 213.8 175 62.9
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.4e-53 213.4 180 63.9
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.9e-53 213.0 170 65.3
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.9e-53 213.0 173 64.2
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 3.2e-53 212.2 178 62.9
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 4.2e-53 211.8 175 63.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.2e-53 211.8 168 62.5
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.2e-53 211.8 183 62.8
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 5.5e-53 211.5 175 66.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 5.5e-53 211.5 178 62.4
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 7.1e-53 211.1 181 60.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 7.1e-53 211.1 175 62.9
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 7.1e-53 211.1 183 61.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 7.1e-53 211.1 183 61.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 9.3e-53 210.7 176 62.5
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 9.3e-53 210.7 182 62.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 9.3e-53 210.7 170 65.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.2e-52 210.3 175 62.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.2e-52 210.3 175 62.9
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.6e-52 209.9 173 63.6
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.6e-52 209.9 188 60.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 3.5e-52 208.8 130 76.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 6.1e-52 208.0 171 64.9
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 6.1e-52 208.0 175 65.7
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 6.1e-52 208.0 175 65.7
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.1e-52 208.0 172 65.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.0e-51 205.7 136 72.8
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 3.0e-51 205.7 136 72.8
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.0e-51 205.7 177 64.4
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 5.1e-51 204.9 126 74.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.1e-51 204.9 180 61.7
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 6.7e-51 204.5 172 62.8
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.5e-50 203.4 180 59.4
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.5e-50 203.4 171 63.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.9e-50 203.0 152 66.4
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 5.7e-50 201.4 150 68.7
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 9.7e-50 200.7 171 63.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 9.7e-50 200.7 177 60.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.7e-50 200.7 172 61.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.6e-49 199.9 136 71.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.6e-49 199.9 177 61.6
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.2e-49 199.5 181 58.0
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.8e-49 199.1 171 61.4
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.8e-49 199.1 172 61.0
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 3.7e-49 198.7 171 62.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 8.2e-49 197.6 159 65.4
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 8.2e-49 197.6 174 62.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 9.0e-48 194.1 135 70.4
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.0e-47 193.0 178 57.3
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-46 189.9 125 75.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 4.2e-45 185.3 178 52.8
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 5.5e-45 184.9 172 58.1
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 5.5e-45 184.9 180 57.2
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 7.2e-45 184.5 167 57.5
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.3e-43 179.5 140 60.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 2.0e-42 176.4 248 46.0
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 2.5e-42 176.0 122 68.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 3.3e-42 175.6 185 50.3
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 2.2e-41 172.9 177 54.8
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 2.2e-41 172.9 144 63.2
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 6.3e-41 171.4 116 69.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 5.3e-40 168.3 181 52.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 2.4e-32 142.9 177 46.3
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.2e-30 136.3 88 71.6
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.7e-28 128.6 166 46.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-27 127.1 82 72.0
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.8e-27 126.7 82 70.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 8.8e-27 124.4 89 68.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 3.3e-26 122.5 120 56.7
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.1e-24 117.5 141 48.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.4e-24 117.1 133 52.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.8e-24 116.7 132 50.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.2e-23 114.0 109 56.9
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.6e-23 112.8 122 50.0
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 7.7e-23 111.3 121 45.5
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 2.7e-20 102.8 103 47.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 4.8e-17 92.0 101 51.5
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 4.8e-17 92.0 101 51.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-15 85.9 75 57.3
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-14 82.4 88 55.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.1e-13 80.9 161 32.9
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.8e-11 71.2 42 78.6
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.7e-09 67.0 58 58.6
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 6.3e-09 65.1 81 45.7
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.4e-08 63.9 82 50.0
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 7.0e-08 61.6 131 35.9
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.3e-06 56.6 84 41.7


User provided reference genes

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