Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_02304 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 2.8e-91 338.6 169 100.0
SEGI_08344 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 1.1e-21 107.5 59 86.4
SEGI_32037 Sequoiadendron giganteum HOM05D000104 ORTHO05D004024 4.0e-21 105.5 91 63.7
SEGI_18030 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 5.2e-21 105.1 57 87.7
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 1.2e-17 94.0 91 53.8
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 2.5e-15 86.3 60 68.3
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 1.6e-14 83.6 62 61.3
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 2.8e-14 82.8 82 52.4
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 3.6e-14 82.4 62 62.9
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 4.7e-14 82.0 115 40.0
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 4.7e-14 82.0 101 47.5
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 8.1e-14 81.3 62 66.1
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 1.4e-13 80.5 59 64.4
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.8e-13 80.1 59 64.4
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 1.8e-13 80.1 62 62.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.8e-13 80.1 59 64.4
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 1.8e-13 80.1 62 62.9
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 1.8e-13 80.1 62 61.3
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 1.8e-13 80.1 60 63.3
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 2.3e-13 79.7 59 62.7
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 2.3e-13 79.7 62 62.9
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 2.3e-13 79.7 59 62.7
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 2.3e-13 79.7 59 62.7
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 2.3e-13 79.7 62 62.9
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 3.1e-13 79.3 115 39.1
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 3.1e-13 79.3 62 62.9
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 3.1e-13 79.3 116 41.4
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 4.0e-13 79.0 62 61.3
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 4.0e-13 79.0 62 61.3
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 5.2e-13 78.6 60 60.0
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 5.2e-13 78.6 62 59.7
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 5.2e-13 78.6 59 62.7
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 6.8e-13 78.2 59 61.0
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 6.8e-13 78.2 60 61.7
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 6.8e-13 78.2 101 45.5
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 6.8e-13 78.2 59 62.7
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 6.8e-13 78.2 98 46.9
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 6.8e-13 78.2 59 61.0
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 6.8e-13 78.2 62 59.7
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 8.9e-13 77.8 60 60.0
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 8.9e-13 77.8 60 60.0
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 8.9e-13 77.8 60 60.0
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 8.9e-13 77.8 62 59.7
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 8.9e-13 77.8 59 64.4
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 8.9e-13 77.8 62 61.3
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 1.2e-12 77.4 59 62.7
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 1.5e-12 77.0 124 40.3
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 1.5e-12 77.0 62 61.3
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.5e-12 77.0 60 63.3
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 1.5e-12 77.0 59 62.7
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 2.0e-12 76.6 62 59.7
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 2.0e-12 76.6 62 59.7
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-12 76.6 59 61.0
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.0e-12 76.6 59 61.0
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 2.0e-12 76.6 60 60.0
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 2.0e-12 76.6 59 59.3
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 2.0e-12 76.6 62 59.7
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 2.0e-12 76.6 60 63.3
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 58.3
A03p29400 Brassica napus HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 58.3
C03p35530 Brassica napus HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 58.3
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 58.3
BraA09t38407Z Brassica rapa HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 61.7
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 61.7
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.6e-12 76.3 59 61.0
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 61.7
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 2.6e-12 76.3 63 60.3
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 2.6e-12 76.3 61 62.3
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.6e-12 76.3 62 59.7
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.6e-12 76.3 62 59.7
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.6e-12 76.3 62 59.7
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 2.6e-12 76.3 59 61.0
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.6e-12 76.3 60 58.3
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 3.4e-12 75.9 60 56.7
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 3.4e-12 75.9 59 61.0
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 3.4e-12 75.9 62 58.1
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 4.4e-12 75.5 59 57.6
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 4.4e-12 75.5 59 57.6
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 4.4e-12 75.5 59 61.0
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.4e-12 75.5 102 47.1
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 4.4e-12 75.5 102 47.1
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 4.4e-12 75.5 59 59.3
Cpa.g.sc74.49 Carica papaya HOM05D001502 ORTHO05D002950 5.8e-12 75.1 57 61.4
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 5.8e-12 75.1 59 61.0
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 5.8e-12 75.1 60 61.7
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 5.8e-12 75.1 59 59.3
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 5.8e-12 75.1 59 59.3
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 7.5e-12 74.7 60 60.0
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 7.5e-12 74.7 60 61.7
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 7.5e-12 74.7 59 62.7
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 7.5e-12 74.7 103 46.6
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 9.9e-12 74.3 59 62.7
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 9.9e-12 74.3 60 61.7
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 9.9e-12 74.3 59 59.3
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 9.9e-12 74.3 60 60.0
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 9.9e-12 74.3 59 59.3
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 1.3e-11 73.9 59 57.6
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 2.2e-11 73.2 62 53.2
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 2.2e-11 73.2 59 59.3
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.9e-11 72.8 60 60.0
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-11 72.8 59 57.6
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-11 72.8 59 57.6
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-11 72.8 59 57.6
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.9e-11 72.8 59 57.6
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 2.9e-11 72.8 59 57.6
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 3.7e-11 72.4 62 56.5
Haze_08835 Corylus avellana HOM05D001502 ORTHO05D002950 3.7e-11 72.4 58 62.1
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 3.7e-11 72.4 62 53.2
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 3.7e-11 72.4 59 57.6
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 4.9e-11 72.0 60 58.3
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 4.9e-11 72.0 60 58.3
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.9e-11 72.0 59 59.3
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 4.9e-11 72.0 101 41.6
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 8.3e-11 71.2 59 55.9
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 8.3e-11 71.2 59 55.9
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 8.3e-11 71.2 59 57.6
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.1e-10 70.9 59 54.2
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.1e-10 70.9 59 55.9
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 1.1e-10 70.9 60 58.3
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 1.1e-10 70.9 60 56.7
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.1e-10 70.9 60 56.7
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 1.1e-10 70.9 108 40.7
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.4e-10 70.5 59 55.9
Cc10_g03930 Coffea canephora HOM05D001502 ORTHO05D002950 1.9e-10 70.1 78 48.7
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.9e-10 70.1 59 54.2
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 1.9e-10 70.1 90 46.7
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 3.2e-10 69.3 60 56.7
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 3.2e-10 69.3 60 58.3
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 3.2e-10 69.3 62 51.6
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 4.1e-10 68.9 62 53.2
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 4.1e-10 68.9 72 52.8
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 4.1e-10 68.9 59 52.5
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 5.4e-10 68.6 59 52.5
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 5.4e-10 68.6 59 52.5
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 5.4e-10 68.6 59 52.5
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 7.1e-10 68.2 59 52.5
Actinidia27382 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.2e-09 67.4 59 55.9
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.6e-09 67.0 62 53.2
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 2.1e-09 66.6 60 55.0
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 2.1e-09 66.6 59 52.5
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 2.1e-09 66.6 74 47.3
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 2.1e-09 66.6 59 54.2
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 2.1e-09 66.6 62 51.6
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 2.7e-09 66.2 59 52.5
AagrBONN_evm.TU.Sc2ySwM_344.901 Anthoceros agrestis HOM05D001502 ORTHO05D002950 4.6e-09 65.5 59 52.5
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 4.6e-09 65.5 60 53.3
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 7.8e-09 64.7 58 50.0
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 2.3e-08 63.2 56 51.8
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 3.0e-08 62.8 59 52.5
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 5.1e-08 62.0 56 53.6
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 5.1e-08 62.0 94 38.3
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 1.5e-07 60.5 52 57.7
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 2.1e-06 56.6 46 56.5
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 2.8e-06 56.2 53 54.7
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 3.6e-06 55.8 53 56.6


User provided reference genes

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