Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01941 Sequoiadendron giganteum HOM05D001790 ORTHO05D003691 3.2e-100 368.6 214 100.0
SEGI_34874 Sequoiadendron giganteum HOM05D001790 ORTHO05D003691 3.5e-38 162.5 90 93.3
Nn1g02214 Nelumbo nucifera HOM05D001790 ORTHO05D003691 2.3e-29 133.3 90 73.3
Nn4g26239 Nelumbo nucifera HOM05D001790 ORTHO05D003691 2.3e-29 133.3 138 52.9
Lsat_1_v5_gn_5_1480 Lactuca sativa HOM05D001790 ORTHO05D003691 1.2e-27 127.5 90 71.1
CSS0035783 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 2.8e-27 126.3 87 72.4
Dinv40278 Davidia involucrata HOM05D001790 ORTHO05D003691 2.8e-27 126.3 90 73.3
GSVIVG01000041001 Vitis vinifera HOM05D001790 ORTHO05D003691 2.8e-27 126.3 88 71.6
RcHm_v2.0_Chr3g0454601 Rosa chinensis HOM05D001790 ORTHO05D003691 4.7e-27 125.6 88 71.6
Actinidia16513 Actinidia chinensis HOM05D001790 ORTHO05D003691 6.2e-27 125.2 90 68.9
Prupe.6G327000 Prunus persica HOM05D001790 ORTHO05D003691 8.1e-27 124.8 90 72.2
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 1.1e-26 124.4 88 71.6
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 1.1e-26 124.4 88 71.6
FvH4_6g05710 Fragaria vesca HOM05D001790 ORTHO05D003691 1.8e-26 123.6 88 71.6
FAN14G1835 Fragaria x ananassa HOM05D001790 ORTHO05D003691 1.8e-26 123.6 88 71.6
EL10As5g23472 Beta vulgaris HOM05D001790 ORTHO05D003691 2.3e-26 123.2 94 62.8
FAN02G4035 Fragaria x ananassa HOM05D001790 ORTHO05D003691 2.3e-26 123.2 88 71.6
MD12G1220200 Malus domestica HOM05D001790 ORTHO05D003691 2.3e-26 123.2 90 68.9
SGA_v2.0_scaffold5G02920 Striga asiatica HOM05D001790 ORTHO05D003691 2.3e-26 123.2 90 68.9
MSTRG.27559 Avicennia marina HOM05D001790 ORTHO05D003691 3.1e-26 122.9 88 70.5
Rhsim01G0058000 Rhododendron simsii HOM05D001790 ORTHO05D003691 3.1e-26 122.9 93 66.7
Ah.11g049780 Amaranthus hybridus HOM05D001790 ORTHO05D003691 4.0e-26 122.5 90 70.0
Lsat_1_v5_gn_2_87680 Lactuca sativa HOM05D001790 ORTHO05D003691 4.0e-26 122.5 90 68.9
Peaxi162Scf00037g00237 Petunia axillaris HOM05D001790 ORTHO05D003691 5.2e-26 122.1 88 69.3
Solyc01g098880.3 Solanum lycopersicum HOM05D001790 ORTHO05D003691 5.2e-26 122.1 88 72.7
FAN05G0374 Fragaria x ananassa HOM05D001790 ORTHO05D003691 6.8e-26 121.7 88 71.6
FAN05G5279 Fragaria x ananassa HOM05D001790 ORTHO05D003691 6.8e-26 121.7 88 71.6
FAN09G3771 Fragaria x ananassa HOM05D001790 ORTHO05D003691 6.8e-26 121.7 88 70.5
MD04G1206400 Malus domestica HOM05D001790 ORTHO05D003691 6.8e-26 121.7 90 66.7
Sopen01g042420 Solanum pennellii HOM05D001790 ORTHO05D003691 6.8e-26 121.7 88 71.6
PGSC0003DMG402028588 Solanum tuberosum HOM05D001790 ORTHO05D003691 6.8e-26 121.7 88 71.6
Lj7A664T57 Lonicera japonica HOM05D001790 ORTHO05D003691 8.9e-26 121.3 88 71.6
Sc16g0008440 Simmondsia chinensis HOM05D001790 ORTHO05D003691 8.9e-26 121.3 90 66.7
SGA_v2.0_scaffold354G49726 Striga asiatica HOM05D001790 ORTHO05D003691 8.9e-26 121.3 90 66.7
Rhsim01G0059500 Rhododendron simsii HOM05D001790 ORTHO05D003691 1.2e-25 120.9 88 68.2
ATR0706G137 Amborella trichopoda HOM05D001790 ORTHO05D003691 1.5e-25 120.6 94 67.0
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 1.5e-25 120.6 88 68.2
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 1.5e-25 120.6 88 68.2
Hund21240 Selenicereus undatus HOM05D001790 ORTHO05D003691 1.5e-25 120.6 90 67.8
Thecc.02G035000 Theobroma cacao HOM05D001790 ORTHO05D003691 1.5e-25 120.6 90 71.1
HanXRQChr04g0099811 Helianthus annuus HOM05D001790 ORTHO05D003691 2.0e-25 120.2 87 69.0
HanXRQChr07g0195751 Helianthus annuus HOM05D001790 ORTHO05D003691 2.0e-25 120.2 87 69.0
vmacro12777 Vaccinium macrocarpon HOM05D001790 ORTHO05D003691 2.0e-25 120.2 88 69.3
QL02p001500 Quercus lobata HOM05D001790 ORTHO05D003691 2.6e-25 119.8 90 70.0
Oeu016077.1 Olea europaea HOM05D001790 ORTHO05D003691 3.4e-25 119.4 90 64.4
Duzib132G0634 Durio zibethinus HOM05D001790 ORTHO05D003691 4.4e-25 119.0 90 70.0
Gohir.A03G212700 Gossypium hirsutum HOM05D001790 ORTHO05D003691 4.4e-25 119.0 90 71.1
Lsat_1_v5_gn_3_25760 Lactuca sativa HOM05D001790 ORTHO05D003691 4.4e-25 119.0 90 64.4
Sed0016587 Sechium edule HOM05D001790 ORTHO05D003691 4.4e-25 119.0 90 65.6
Actinidia06601 Actinidia chinensis HOM05D001790 ORTHO05D003691 9.8e-25 117.9 88 65.9
Hma1.2p1_0928F.1_g237860 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 9.8e-25 117.9 87 67.8
Actinidia20058 Actinidia chinensis HOM05D001790 ORTHO05D003691 1.3e-24 117.5 99 60.6
Ca_01500_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.3e-24 117.5 91 67.0
Gohir.A01G179400 Gossypium hirsutum HOM05D001790 ORTHO05D003691 1.3e-24 117.5 90 67.8
Gohir.D02G234200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 1.3e-24 117.5 90 70.0
Gorai.005G262200 Gossypium raimondii HOM05D001790 ORTHO05D003691 1.3e-24 117.5 90 70.0
Atru.chr8.1410 Acer truncatum HOM05D001790 ORTHO05D003691 1.7e-24 117.1 88 67.0
Gohir.D01G170200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 1.7e-24 117.1 90 67.8
Gorai.002G211800 Gossypium raimondii HOM05D001790 ORTHO05D003691 1.7e-24 117.1 90 67.8
QL03p006890 Quercus lobata HOM05D001790 ORTHO05D003691 1.7e-24 117.1 90 66.7
arahy.Tifrunner.gnm1.ann1.DW9AST Arachis hypogaea HOM05D001790 ORTHO05D003691 2.2e-24 116.7 91 67.0
CiPaw.07G016900 Carya illinoinensis HOM05D001790 ORTHO05D003691 2.2e-24 116.7 90 66.7
MBI04_g35660_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D003691 2.2e-24 116.7 90 66.7
Sc06g0003380 Simmondsia chinensis HOM05D001790 ORTHO05D003691 2.2e-24 116.7 90 64.4
TAR362G0657 Trochodendron aralioides HOM05D001790 ORTHO05D003691 2.2e-24 116.7 88 68.2
TAR365G0532 Trochodendron aralioides HOM05D001790 ORTHO05D003691 2.2e-24 116.7 90 66.7
CDE10G0434 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 2.9e-24 116.3 87 71.3
Cc02_g33530 Coffea canephora HOM05D001790 ORTHO05D003691 2.9e-24 116.3 87 64.4
Aqoxy3G00799 Aquilegia oxysepala HOM05D001790 ORTHO05D003691 3.7e-24 115.9 90 64.4
arahy.Tifrunner.gnm1.ann1.29QZWB Arachis hypogaea HOM05D001790 ORTHO05D003691 3.7e-24 115.9 91 67.0
arahy.Tifrunner.gnm1.ann1.8W4KMR Arachis hypogaea HOM05D001790 ORTHO05D003691 3.7e-24 115.9 91 64.8
VMungo0720G0527 Vigna mungo HOM05D001790 ORTHO05D003691 3.7e-24 115.9 91 64.8
arahy.Tifrunner.gnm1.ann1.PXJ7J7 Arachis hypogaea HOM05D001790 ORTHO05D003691 4.9e-24 115.5 91 64.8
Migut.F00862 Erythranthe guttata HOM05D001790 ORTHO05D003691 4.9e-24 115.5 87 66.7
Eucgr.H04482 Eucalyptus grandis HOM05D001790 ORTHO05D003691 4.9e-24 115.5 88 64.8
Ciclev10001143m.g Citrus clementina HOM05D001790 ORTHO05D003691 1.4e-23 114.0 88 63.6
Cfa006580 Carpinus fangiana HOM05D001790 ORTHO05D003691 1.9e-23 113.6 90 64.4
Sed0000871 Sechium edule HOM05D001790 ORTHO05D003691 1.9e-23 113.6 90 63.3
PGR031G2902 Punica granatum HOM05D001790 ORTHO05D003691 3.2e-23 112.8 87 66.7
Duzib248G1449 Durio zibethinus HOM05D001790 ORTHO05D003691 4.1e-23 112.5 90 68.9
Potri.005G094400 Populus trichocarpa HOM05D001790 ORTHO05D003691 4.1e-23 112.5 90 66.7
Glyma.10G155000 Glycine max HOM05D001790 ORTHO05D003691 5.4e-23 112.1 91 63.7
RcHm_v2.0_Chr2g0115881 Rosa chinensis HOM05D001790 ORTHO05D003691 5.4e-23 112.1 106 57.5
ECA246G3796 Erigeron canadensis HOM05D001790 ORTHO05D003691 9.2e-23 111.3 90 58.9
Medtr1g082850 Medicago truncatula HOM05D001790 ORTHO05D003691 9.2e-23 111.3 88 65.9
SalBow4G2898 Salvia bowleyana HOM05D001790 ORTHO05D003691 9.2e-23 111.3 90 62.2
Manes.02G210900 Manihot esculenta HOM05D001790 ORTHO05D003691 1.2e-22 110.9 90 62.2
SalBow3G2039 Salvia bowleyana HOM05D001790 ORTHO05D003691 1.2e-22 110.9 90 61.1
Ca_10108_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.6e-22 110.5 91 62.6
MELO3C026449.2 Cucumis melo HOM05D001790 ORTHO05D003691 1.6e-22 110.5 90 62.2
Manes.10G109523 Manihot esculenta HOM05D001790 ORTHO05D003691 1.6e-22 110.5 90 62.2
QL06p003654 Quercus lobata HOM05D001790 ORTHO05D003691 1.6e-22 110.5 90 63.3
CsaV3_5G013970 Cucumis sativus L. HOM05D001790 ORTHO05D003691 2.1e-22 110.2 90 62.2
Lj5g0001404 Lotus japonicus HOM05D001790 ORTHO05D003691 2.1e-22 110.2 91 61.5
Lalb_Chr18g0045581 Lupinus albus HOM05D001790 ORTHO05D003691 2.1e-22 110.2 87 63.2
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 2.1e-22 110.2 88 64.8
HPP92_015619 Vanilla planifolia HOM05D001790 ORTHO05D003691 2.1e-22 110.2 90 65.6
ClCG03G016950 Citrullus lanatus HOM05D001790 ORTHO05D003691 2.7e-22 109.8 90 62.2
Sabra05G0078200 Salix brachista HOM05D001790 ORTHO05D003691 2.7e-22 109.8 104 57.7
ECA234G0311 Erigeron canadensis HOM05D001790 ORTHO05D003691 3.5e-22 109.4 87 65.5
Glyma.20G233300 Glycine max HOM05D001790 ORTHO05D003691 3.5e-22 109.4 91 61.5
Hma1.2p1_0617F.1_g190250 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 3.5e-22 109.4 87 64.4
Psat6g149680 Pisum sativum HOM05D001790 ORTHO05D003691 3.5e-22 109.4 90 62.2
CiPaw.08G165400 Carya illinoinensis HOM05D001790 ORTHO05D003691 4.6e-22 109.0 90 63.3
PSO210G1133 Papaver somniferum HOM05D001790 ORTHO05D003691 7.8e-22 108.2 88 64.8
PSO210G6516 Papaver somniferum HOM05D001790 ORTHO05D003691 7.8e-22 108.2 88 64.8
TWI56G0634 Tripterygium wilfordii HOM05D001790 ORTHO05D003691 1.0e-21 107.8 87 65.5
unitig_37.g12350 Utricularia gibba HOM05D001790 ORTHO05D003691 1.0e-21 107.8 87 62.1
CAN.G134.54 Capsicum annuum HOM05D001790 ORTHO05D003691 1.3e-21 107.5 87 60.9
Psat6g149440 Pisum sativum HOM05D001790 ORTHO05D003691 1.3e-21 107.5 91 61.5
Os03g0198400 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 1.7e-21 107.1 90 61.1
Phvul.007G180500 Phaseolus vulgaris HOM05D001790 ORTHO05D003691 1.7e-21 107.1 91 61.5
Zm00001eb400980 Zea mays HOM05D001790 ORTHO05D003691 1.7e-21 107.1 103 52.4
THA.LOC104818684 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 2.3e-21 106.7 87 64.4
Zm00001eb113140 Zea mays HOM05D001790 ORTHO05D003691 2.3e-21 106.7 103 52.4
Lsat_1_v5_gn_4_42741 Lactuca sativa HOM05D001790 ORTHO05D003691 3.0e-21 106.3 96 58.3
COL.COLO4_17835 Corchorus olitorius HOM05D001790 ORTHO05D003691 3.9e-21 105.9 90 63.3
DCAR_011444 Daucus carota HOM05D001790 ORTHO05D003691 3.9e-21 105.9 90 61.1
DCAR_029748 Daucus carota HOM05D001790 ORTHO05D003691 3.9e-21 105.9 90 61.1
TPR.G14125 Trifolium pratense HOM05D001790 ORTHO05D003691 3.9e-21 105.9 91 59.3
THA.LOC104821709 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 1.1e-20 104.4 90 62.2
PSO832G0951 Papaver somniferum HOM05D001790 ORTHO05D003691 1.9e-20 103.6 87 64.4
Hund07063 Selenicereus undatus HOM05D001790 ORTHO05D003691 2.5e-20 103.2 90 58.9
Cpa.g.sc26.176 Carica papaya HOM05D001790 ORTHO05D003691 7.3e-20 101.7 93 60.2
AT5G27470 Arabidopsis thaliana HOM05D001790 ORTHO05D003691 9.5e-20 101.3 102 55.9
AL6G39530 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.2e-19 100.9 102 54.9
Aa31LG11G9230 Aethionema arabicum HOM05D001790 ORTHO05D003691 1.6e-19 100.5 100 57.0
AL6G39540 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.6e-19 100.5 93 58.1
Carub.0006s2506 Capsella rubella HOM05D001790 ORTHO05D003691 2.1e-19 100.1 93 58.1
CARHR289470 Cardamine hirsuta HOM05D001790 ORTHO05D003691 2.1e-19 100.1 102 53.9
SMO146G0126 Selaginella moellendorffii HOM05D001790 ORTHO05D003691 8.1e-19 98.2 94 54.3
AagrBONN_evm.TU.Sc2ySwM_344.3412 Anthoceros agrestis HOM05D001790 ORTHO05D003691 1.8e-18 97.1 88 56.8
Lalb_Chr21g0310711 Lupinus albus HOM05D001790 ORTHO05D003691 3.1e-18 96.3 71 69.0
Sp2g20690 Schrenkiella parvula HOM05D001790 ORTHO05D003691 3.1e-18 96.3 100 54.0
Zm00001eb344690 Zea mays HOM05D001790 ORTHO05D003691 4.0e-18 95.9 104 49.0
A02p38650 Brassica napus HOM05D001790 ORTHO05D003691 6.8e-18 95.1 100 54.0
BraA02t08841Z Brassica rapa HOM05D001790 ORTHO05D003691 6.8e-18 95.1 100 54.0
CAN.G1091.2 Capsicum annuum HOM05D001790 ORTHO05D003691 6.8e-18 95.1 88 53.4
Thhalv10004203m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 6.8e-18 95.1 90 56.7
ECA246G0857 Erigeron canadensis HOM05D001790 ORTHO05D003691 8.9e-18 94.7 87 52.9
FvH4_3g37770 Fragaria vesca HOM05D001790 ORTHO05D003691 1.5e-17 94.0 92 55.4
C02p58140 Brassica napus HOM05D001790 ORTHO05D003691 3.4e-17 92.8 100 53.0
BolC2t11882H Brassica oleracea HOM05D001790 ORTHO05D003691 3.4e-17 92.8 100 53.0
BcaC03g17790 Brassica carinata HOM05D001790 ORTHO05D003691 1.7e-16 90.5 89 56.2
CSS0029145 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 2.2e-16 90.1 70 64.3
CSS0038561 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 3.8e-16 89.4 85 58.8
CAN.G1077.17 Capsicum annuum HOM05D001790 ORTHO05D003691 3.8e-16 89.4 99 52.5
CSS0032051 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 6.4e-16 88.6 85 58.8
Mapoly0079s0015 Marchantia polymorpha HOM05D001790 ORTHO05D003691 8.4e-16 88.2 92 54.3
Dinv23948 Davidia involucrata HOM05D001790 ORTHO05D003691 3.2e-15 86.3 61 67.2
CDE10G0730 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 9.2e-15 84.7 61 72.1
Lj5g0023584 Lotus japonicus HOM05D001790 ORTHO05D003691 1.6e-14 84.0 91 51.6
Os01g0559100 Oryza sativa ssp. japonica HOM05D001790 ORTHO05D003691 2.1e-14 83.6 97 48.5
AL1G50890 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 4.6e-14 82.4 90 50.0
Carub.0001s3362 Capsella rubella HOM05D001790 ORTHO05D003691 1.0e-13 81.3 94 51.1
BcaC04g23675 Brassica carinata HOM05D001790 ORTHO05D003691 2.3e-13 80.1 90 51.1
C07p40910 Brassica napus HOM05D001790 ORTHO05D003691 6.6e-13 78.6 90 50.0
ECA246G2160 Erigeron canadensis HOM05D001790 ORTHO05D003691 6.6e-13 78.6 72 54.2
BcaB04g19676 Brassica carinata HOM05D001790 ORTHO05D003691 8.6e-13 78.2 90 50.0
Pp3c13_16820 Physcomitrium patens HOM05D001790 ORTHO05D003691 8.6e-13 78.2 90 43.3
BcaNung04373 Brassica carinata HOM05D001790 ORTHO05D003691 1.5e-12 77.4 90 47.8
BolC7t44620H Brassica oleracea HOM05D001790 ORTHO05D003691 1.9e-12 77.0 90 50.0
BraA09t36170Z Brassica rapa HOM05D001790 ORTHO05D003691 1.9e-12 77.0 90 48.9
Ah.02g112000 Amaranthus hybridus HOM05D001790 ORTHO05D003691 2.5e-12 76.6 90 48.9
A09p05320 Brassica napus HOM05D001790 ORTHO05D003691 2.5e-12 76.6 90 48.9
BcaNung02448 Brassica carinata HOM05D001790 ORTHO05D003691 3.3e-12 76.3 90 50.0
A06p37450 Brassica napus HOM05D001790 ORTHO05D003691 3.3e-12 76.3 90 50.0
C09p05790 Brassica napus HOM05D001790 ORTHO05D003691 5.6e-12 75.5 90 50.0
BolC9t53506H Brassica oleracea HOM05D001790 ORTHO05D003691 5.6e-12 75.5 90 50.0
BraA06t26669Z Brassica rapa HOM05D001790 ORTHO05D003691 5.6e-12 75.5 90 50.0
AL8G17390 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 1.2e-11 74.3 91 49.5
Aqoxy3G00711 Aquilegia oxysepala HOM05D001790 ORTHO05D003691 1.6e-11 73.9 96 46.9
MCO07G384 Micromonas commoda HOM05D001790 ORTHO05D003691 1.4e-10 70.9 92 42.4
Cre03.g189400 Chlamydomonas reinhardtii HOM05D001790 ORTHO05D003691 4.0e-10 69.3 65 53.8
HPP92_015353 Vanilla planifolia HOM05D001790 ORTHO05D023066 3.4e-09 66.2 54 64.8
Haze_26143 Corylus avellana HOM05D001790 ORTHO05D003691 4.9e-08 62.4 103 34.0
A09p05300 Brassica napus HOM05D001643 ORTHO05D001580 1.1e-07 61.2 92 45.7
PRCOL_00002676 Prasinoderma coloniale HOM05D001790 ORTHO05D003691 1.1e-07 61.2 51 56.9
Cpa.g.sc48.197 Carica papaya HOM05D001790 ORTHO05D003691 7.1e-07 58.5 59 54.2
unitig_46.g18641 Utricularia gibba HOM05D001790 ORTHO05D023066 7.1e-07 58.5 58 51.7
Thhalv10029181m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 9.3e-07 58.2 71 46.5
SMO118G0093 Selaginella moellendorffii HOM05D001790 ORTHO05D003691 6.0e-06 55.5 88 34.1


User provided reference genes

Program Settings