Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01939 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 2.8e-91 338.6 168 100.0
SEGI_15938 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 4.1e-34 148.7 93 80.6
SEGI_06000 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 7.5e-20 101.3 81 67.9
SEGI_01779 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 3.3e-15 85.9 85 49.4
SEGI_25148 Sequoiadendron giganteum HOM05D012746 ORTHO05D012208 4.1e-10 68.9 66 57.6
SEGI_31702 Sequoiadendron giganteum HOM05D000090 ORTHO05D000083 4.6e-09 65.5 66 56.1
SEGI_13616 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 5.9e-09 65.1 127 36.2
CSS0038779 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 3.0e-08 62.8 71 45.1
CSS0041104 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 3.0e-08 62.8 71 45.1
Cfa019667 Carpinus fangiana HOM05D000339 ORTHO05D000212 3.0e-08 62.8 76 42.1
Thhalv10022042m.g Eutrema salsugineum HOM05D000339 ORTHO05D000212 5.0e-08 62.0 108 35.2
SEGI_15599 Sequoiadendron giganteum HOM05D000170 ORTHO05D000159 5.0e-08 62.0 78 47.4
ClCG04G010670 Citrullus lanatus HOM05D000339 ORTHO05D000212 6.6e-08 61.6 74 41.9
COL.COLO4_37684 Corchorus olitorius HOM05D000339 ORTHO05D000212 6.6e-08 61.6 87 42.5
Duzib205G0598 Durio zibethinus HOM05D000339 ORTHO05D000212 6.6e-08 61.6 75 42.7
CDE05G3341 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 8.6e-08 61.2 62 46.8
Oeu015085.1 Olea europaea HOM05D000339 ORTHO05D000212 8.6e-08 61.2 67 43.3
ATR0564G332 Amborella trichopoda HOM05D000339 ORTHO05D000212 1.1e-07 60.8 66 43.9
MELO3C002129.2 Cucumis melo HOM05D000339 ORTHO05D000212 1.1e-07 60.8 73 41.1
CsaV3_1G007120 Cucumis sativus L. HOM05D000339 ORTHO05D000212 1.1e-07 60.8 73 41.1
Duzib068G1069 Durio zibethinus HOM05D000339 ORTHO05D000212 1.1e-07 60.8 75 42.7
Potri.015G039100 Populus trichocarpa HOM05D000339 ORTHO05D000212 1.1e-07 60.8 71 43.7
VMungo0464G1747 Vigna mungo HOM05D000339 ORTHO05D000212 1.1e-07 60.8 90 35.6
Lalb_Chr05g0221701 Lupinus albus HOM05D000339 ORTHO05D000212 1.5e-07 60.5 75 41.3
Lalb_Chr16g0387021 Lupinus albus HOM05D000339 ORTHO05D000212 1.5e-07 60.5 75 41.3
Potri.012G047700 Populus trichocarpa HOM05D000339 ORTHO05D000212 1.5e-07 60.5 71 43.7
SalBow1G4625 Salvia bowleyana HOM05D000339 ORTHO05D000212 1.5e-07 60.5 81 40.7
Thecc.03G054500 Theobroma cacao HOM05D000339 ORTHO05D000212 1.5e-07 60.5 75 42.7
MSTRG.9298 Avicennia marina HOM05D000339 ORTHO05D000212 1.9e-07 60.1 75 41.3
Migut.D01555 Erythranthe guttata HOM05D000339 ORTHO05D000212 1.9e-07 60.1 75 41.3
Prupe.5G232600 Prunus persica HOM05D000339 ORTHO05D000212 1.9e-07 60.1 78 39.7
QL10p028490 Quercus lobata HOM05D000339 ORTHO05D000212 1.9e-07 60.1 75 42.7
DCAR_023274 Daucus carota HOM05D000339 ORTHO05D000212 2.5e-07 59.7 90 35.6
Glyma.05G245900 Glycine max HOM05D000339 ORTHO05D000212 2.5e-07 59.7 75 41.3
Phvul.002G329500 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 2.5e-07 59.7 75 41.3
Psat7g002400 Pisum sativum HOM05D000339 ORTHO05D000212 2.5e-07 59.7 75 41.3
RcHm_v2.0_Chr7g0178511 Rosa chinensis HOM05D000339 ORTHO05D000212 2.5e-07 59.7 75 42.7
Sabra15G0038100 Salix brachista HOM05D000339 ORTHO05D000212 2.5e-07 59.7 71 42.3
Sabra15G0057700 Salix brachista HOM05D000339 ORTHO05D000212 2.5e-07 59.7 71 42.3
Sabra15G0070900 Salix brachista HOM05D000339 ORTHO05D000212 2.5e-07 59.7 71 42.3
SEGI_11894 Sequoiadendron giganteum HOM05D000206 ORTHO05D002863 2.5e-07 59.7 111 38.7
unitig_747.g21332 Utricularia gibba HOM05D000339 ORTHO05D000212 2.5e-07 59.7 72 43.1
VMungo0251G0580 Vigna mungo HOM05D000339 ORTHO05D000212 2.5e-07 59.7 75 41.3
CARHR144040 Cardamine hirsuta HOM05D000339 ORTHO05D000212 3.3e-07 59.3 77 41.6
CiPaw.16G093000 Carya illinoinensis HOM05D000339 ORTHO05D000212 3.3e-07 59.3 75 42.7
Duzib084G0984 Durio zibethinus HOM05D000339 ORTHO05D000212 3.3e-07 59.3 75 40.0
Sed0002793 Sechium edule HOM05D000339 ORTHO05D000212 3.3e-07 59.3 79 39.2
TPR.G1426 Trifolium pratense HOM05D000339 ORTHO05D000212 3.3e-07 59.3 71 43.7
Atru.chr9.1742 Acer truncatum HOM05D000339 ORTHO05D000212 4.3e-07 58.9 71 43.7
ATR0559G221 Amborella trichopoda HOM05D000339 ORTHO05D000212 4.3e-07 58.9 76 42.1
CiPaw.15G142700 Carya illinoinensis HOM05D000339 ORTHO05D000212 4.3e-07 58.9 76 40.8
Eucgr.B00945 Eucalyptus grandis HOM05D000339 ORTHO05D000212 4.3e-07 58.9 96 35.4
THA.LOC104821830 Tarenaya hassleriana HOM05D000339 ORTHO05D000212 4.3e-07 58.9 74 36.5
AL143U10010 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 5.6e-07 58.5 108 36.1
AL3G31160 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 5.6e-07 58.5 108 36.1
MSTRG.4575 Avicennia marina HOM05D000339 ORTHO05D000212 5.6e-07 58.5 64 43.8
A05p31820 Brassica napus HOM05D000339 ORTHO05D000212 5.6e-07 58.5 75 41.3
Glyma.08G053702 Glycine max HOM05D000339 ORTHO05D000212 5.6e-07 58.5 74 40.5
MD14G1235800 Malus domestica HOM05D000339 ORTHO05D000212 5.6e-07 58.5 82 39.0
Phvul.004G151575 Phaseolus vulgaris HOM05D000339 ORTHO05D000212 5.6e-07 58.5 78 39.7
PGR102G1775 Punica granatum HOM05D000339 ORTHO05D000212 5.6e-07 58.5 68 44.1
Sabra14G0017300 Salix brachista HOM05D000339 ORTHO05D000212 5.6e-07 58.5 121 32.2
Ca_17194_v3 Cicer arietinum L. HOM05D000339 ORTHO05D000212 7.3e-07 58.2 73 41.1
FAN13G1871 Fragaria x ananassa HOM05D000339 ORTHO05D000212 7.3e-07 58.2 75 41.3
MD06G1231300 Malus domestica HOM05D000339 ORTHO05D000212 7.3e-07 58.2 73 41.1
Medtr8g107210 Medicago truncatula HOM05D000339 ORTHO05D000212 7.3e-07 58.2 71 42.3
SEGI_11467 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 7.3e-07 58.2 95 38.9
unitig_27.g25179 Utricularia gibba HOM05D000339 ORTHO05D000212 7.3e-07 58.2 62 45.2
Actinidia28130 Actinidia chinensis HOM05D000339 ORTHO05D000212 9.5e-07 57.8 92 38.0
MSTRG.2161 Avicennia marina HOM05D000339 ORTHO05D000212 9.5e-07 57.8 108 31.5
BcaC01g03716 Brassica carinata HOM05D000339 ORTHO05D000212 9.5e-07 57.8 108 35.2
BcaC05g28726 Brassica carinata HOM05D000339 ORTHO05D000212 9.5e-07 57.8 110 34.5
C03p49330 Brassica napus HOM05D000339 ORTHO05D000212 9.5e-07 57.8 108 35.2
C05p48300 Brassica napus HOM05D000339 ORTHO05D000212 9.5e-07 57.8 110 34.5
BolC3t17224H Brassica oleracea HOM05D000339 ORTHO05D000212 9.5e-07 57.8 108 35.2
BolC5t33563H Brassica oleracea HOM05D000339 ORTHO05D000212 9.5e-07 57.8 110 34.5
CDE05G0515 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 9.5e-07 57.8 62 43.5
Lj4g0005482 Lotus japonicus HOM05D000339 ORTHO05D000212 9.5e-07 57.8 71 42.3
Oeu003375.1 Olea europaea HOM05D000339 ORTHO05D000212 9.5e-07 57.8 62 41.9
PGR083G0002 Punica granatum HOM05D000339 ORTHO05D000212 9.5e-07 57.8 71 42.3
GSVIVG01008424001 Vitis vinifera HOM05D000339 ORTHO05D000212 9.5e-07 57.8 100 36.0
A03p40490 Brassica napus HOM05D000339 ORTHO05D000212 1.2e-06 57.4 73 41.1
BraA03t13208Z Brassica rapa HOM05D000339 ORTHO05D000212 1.2e-06 57.4 73 41.1
CSS0009726 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.2e-06 57.4 71 40.8
CSS0023556 Camellia sinensis var. sinensis HOM05D000339 ORTHO05D000212 1.2e-06 57.4 71 40.8
CDE06G2692 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 1.2e-06 57.4 111 33.3
CDE07G1275 Ceratophyllum demersum HOM05D000339 ORTHO05D000212 1.2e-06 57.4 111 33.3
Cc04_g06330 Coffea canephora HOM05D000339 ORTHO05D000212 1.2e-06 57.4 71 40.8
Gohir.A12G269100 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.2e-06 57.4 137 32.1
Gohir.D12G269500 Gossypium hirsutum HOM05D000339 ORTHO05D000212 1.2e-06 57.4 137 32.1
Gorai.008G289800 Gossypium raimondii HOM05D000339 ORTHO05D000212 1.2e-06 57.4 137 32.1
Sp3g16120 Schrenkiella parvula HOM05D000339 ORTHO05D000212 1.2e-06 57.4 108 34.3
Sed0005608 Sechium edule HOM05D000339 ORTHO05D000212 1.2e-06 57.4 71 40.8
unitig_62.g23735 Utricularia gibba HOM05D000339 ORTHO05D000212 1.2e-06 57.4 62 45.2
unitig_699.g19659 Utricularia gibba HOM05D000339 ORTHO05D000212 1.2e-06 57.4 68 42.6
Carub.0003s1772 Capsella rubella HOM05D000339 ORTHO05D000212 1.6e-06 57.0 108 33.3
ClCG06G014350 Citrullus lanatus HOM05D000339 ORTHO05D000212 1.6e-06 57.0 81 37.0
MBI14_g25104_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 1.6e-06 57.0 68 39.7
Sabra02G0097400 Salix brachista HOM05D000339 ORTHO05D000212 1.6e-06 57.0 75 41.3
unitig_0.g2238 Utricularia gibba HOM05D000339 ORTHO05D000212 1.6e-06 57.0 62 45.2
unitig_8.g3991 Utricularia gibba HOM05D000339 ORTHO05D000212 1.6e-06 57.0 71 39.4
MSTRG.13597 Avicennia marina HOM05D000339 ORTHO05D000212 2.1e-06 56.6 82 37.8
BcaB06g25866 Brassica carinata HOM05D000339 ORTHO05D000212 2.1e-06 56.6 108 35.2
AUR62017610 Chenopodium quinoa HOM05D000339 ORTHO05D000212 2.1e-06 56.6 69 42.0
HanXRQChr12g0381151 Helianthus annuus HOM05D000339 ORTHO05D000212 2.1e-06 56.6 82 35.4
Manes.15G129200 Manihot esculenta HOM05D000339 ORTHO05D000212 2.1e-06 56.6 78 38.5
Sabra12G0033500 Salix brachista HOM05D000339 ORTHO05D000212 2.1e-06 56.6 92 37.0
Ah.01g013350 Amaranthus hybridus HOM05D000339 ORTHO05D000212 2.8e-06 56.2 69 42.0
BraA05t22013Z Brassica rapa HOM05D000339 ORTHO05D000212 2.8e-06 56.2 100 37.0
CAN.G394.6 Capsicum annuum HOM05D000339 ORTHO05D000212 2.8e-06 56.2 83 38.6
CARHR093320 Cardamine hirsuta HOM05D000339 ORTHO05D000212 2.8e-06 56.2 108 35.2
Cc01_g12690 Coffea canephora HOM05D000339 ORTHO05D000212 2.8e-06 56.2 68 41.2
FvH4_5g17270 Fragaria vesca HOM05D000339 ORTHO05D000212 2.8e-06 56.2 135 29.6
FAN04G2675 Fragaria x ananassa HOM05D000339 ORTHO05D000212 2.8e-06 56.2 135 29.6
FAN08G2756 Fragaria x ananassa HOM05D000339 ORTHO05D000212 2.8e-06 56.2 135 29.6
FAN18G3640 Fragaria x ananassa HOM05D000339 ORTHO05D000212 2.8e-06 56.2 135 29.6
Lalb_Chr16g0385071 Lupinus albus HOM05D000339 ORTHO05D000212 2.8e-06 56.2 68 42.6
Potri.002G124100 Populus trichocarpa HOM05D000339 ORTHO05D000212 2.8e-06 56.2 75 41.3
SalBow2G3481 Salvia bowleyana HOM05D000339 ORTHO05D000212 2.8e-06 56.2 69 40.6
Sed0003514 Sechium edule HOM05D000339 ORTHO05D000212 2.8e-06 56.2 87 39.1
AT3G18010 Arabidopsis thaliana HOM05D000339 ORTHO05D000212 3.6e-06 55.8 108 33.3
BcaB04g18976 Brassica carinata HOM05D000339 ORTHO05D000212 3.6e-06 55.8 126 31.7
Glyma.07G101000 Glycine max HOM05D000339 ORTHO05D000212 3.6e-06 55.8 129 28.7
Oeu014381.1 Olea europaea HOM05D000339 ORTHO05D000212 3.6e-06 55.8 68 39.7
SEGI_12097 Sequoiadendron giganteum HOM05D000713 ORTHO05D000547 3.6e-06 55.8 72 48.6
Sc12g0007200 Simmondsia chinensis HOM05D000339 ORTHO05D000212 3.6e-06 55.8 69 40.6
TWI60G1718 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 3.6e-06 55.8 73 39.7
AL5G10490 Arabidopsis lyrata HOM05D000339 ORTHO05D000212 4.7e-06 55.5 80 35.0
A09p61690 Brassica napus HOM05D000339 ORTHO05D000212 4.7e-06 55.5 69 34.8
BraA09t41541Z Brassica rapa HOM05D000339 ORTHO05D000212 4.7e-06 55.5 69 34.8
Haze_18839 Corylus avellana HOM05D000339 ORTHO05D000212 4.7e-06 55.5 81 35.8
Oeu031328.1 Olea europaea HOM05D000339 ORTHO05D000212 4.7e-06 55.5 73 35.6
Potri.014G025300 Populus trichocarpa HOM05D000339 ORTHO05D000212 4.7e-06 55.5 96 36.5
SEGI_11640 Sequoiadendron giganteum HOM05D000339 ORTHO05D000212 4.7e-06 55.5 55 47.3
SGA_v2.0_scaffold234G43613 Striga asiatica HOM05D000339 ORTHO05D000212 4.7e-06 55.5 62 40.3
SGA_v2.0_scaffold60G20869 Striga asiatica HOM05D000339 ORTHO05D000212 4.7e-06 55.5 96 35.4
TWI81G0853 Tripterygium wilfordii HOM05D000339 ORTHO05D000212 4.7e-06 55.5 71 40.8
unitig_0.g2229 Utricularia gibba HOM05D000339 ORTHO05D000212 4.7e-06 55.5 61 42.6
AT2G01500 Arabidopsis thaliana HOM05D000339 ORTHO05D000212 6.2e-06 55.1 78 37.2
Cpa.g.sc3.402 Carica papaya HOM05D000339 ORTHO05D000212 6.2e-06 55.1 135 28.9
CiPaw.06G046900 Carya illinoinensis HOM05D000339 ORTHO05D000212 6.2e-06 55.1 61 42.6
Migut.L00355 Erythranthe guttata HOM05D000339 ORTHO05D000212 6.2e-06 55.1 80 35.0
Lsat_1_v5_gn_5_72381 Lactuca sativa HOM05D000339 ORTHO05D000212 6.2e-06 55.1 71 38.0
Manes.18G040300 Manihot esculenta HOM05D000339 ORTHO05D000212 6.2e-06 55.1 75 40.0
Nitab4.5_0006759g0010 Nicotiana tabacum HOM05D000339 ORTHO05D000212 6.2e-06 55.1 103 31.1
PSO339G2470 Papaver somniferum HOM05D000339 ORTHO05D000212 6.2e-06 55.1 50 48.0
VMungo1080G0455 Vigna mungo HOM05D000339 ORTHO05D000212 6.2e-06 55.1 68 38.2
Haze_24075 Corylus avellana HOM05D000339 ORTHO05D000212 8.0e-06 54.7 68 38.2
MELO3C017355.2 Cucumis melo HOM05D000339 ORTHO05D000212 8.0e-06 54.7 65 41.5
Glyma.09G177800 Glycine max HOM05D000339 ORTHO05D000212 8.0e-06 54.7 116 28.4
Lj4g0019920 Lotus japonicus HOM05D000339 ORTHO05D000212 8.0e-06 54.7 99 33.3
Lalb_Chr14g0370731 Lupinus albus HOM05D000339 ORTHO05D000212 8.0e-06 54.7 74 36.5
Hund24083 Selenicereus undatus HOM05D000339 ORTHO05D000212 8.0e-06 54.7 75 38.7


User provided reference genes

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