Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 4.1e-53 211.1 102 100.0
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.1e-33 145.6 98 71.4
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 4.7e-33 144.4 99 67.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.1e-33 144.1 92 72.8
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 3.0e-32 141.7 92 71.7
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 8.8e-32 140.2 92 70.7
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 4.4e-31 137.9 92 68.5
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.2e-30 135.6 92 66.3
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 2.2e-30 135.6 92 66.3
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 2.2e-30 135.6 92 67.4
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 2.8e-30 135.2 92 68.5
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.8e-30 135.2 95 66.3
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 3.7e-30 134.8 97 61.9
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 3.7e-30 134.8 92 66.3
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 4.8e-30 134.4 92 66.3
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 6.3e-30 134.0 95 64.2
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 1.8e-29 132.5 92 66.3
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 3.1e-29 131.7 95 62.1
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 3.1e-29 131.7 95 62.1
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 3.1e-29 131.7 95 62.1
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 4.1e-29 131.3 93 67.7
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 5.4e-29 131.0 98 61.2
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 7.0e-29 130.6 92 63.0
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 7.0e-29 130.6 92 63.0
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 9.1e-29 130.2 92 65.2
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.6e-28 129.4 92 66.3
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.0e-28 129.0 92 64.1
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 3.5e-28 128.3 92 65.2
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 4.5e-28 127.9 92 64.1
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 5.9e-28 127.5 95 61.1
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 5.9e-28 127.5 95 61.1
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 5.9e-28 127.5 92 64.1
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 5.9e-28 127.5 92 64.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 7.7e-28 127.1 95 62.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 7.7e-28 127.1 92 63.0
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.0e-27 126.7 92 63.0
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 92 64.1
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 1.3e-27 126.3 92 64.1
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.7e-27 125.9 93 64.5
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 2.9e-27 125.2 93 62.4
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 2.9e-27 125.2 92 62.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.9e-27 125.2 94 63.8
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.9e-27 125.2 95 61.1
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 5.0e-27 124.4 95 62.1
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 5.0e-27 124.4 92 63.0
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 93 63.4
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 93 63.4
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.0e-27 124.4 93 63.4
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 5.0e-27 124.4 92 65.2
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 6.5e-27 124.0 92 62.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.1e-26 123.2 95 60.0
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.9e-26 122.5 86 69.8
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.5e-26 122.1 92 62.0
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 2.5e-26 122.1 92 62.0
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.3e-26 121.7 92 62.0
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 3.3e-26 121.7 92 62.0
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 5.5e-26 120.9 88 68.2
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.2e-25 119.8 96 61.5
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.2e-25 119.8 92 59.8
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.2e-25 119.8 91 62.6
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.2e-25 119.8 84 66.7
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 2.1e-25 119.0 94 61.7
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 2.8e-25 118.6 92 58.7
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 2.8e-25 118.6 92 58.7
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.8e-25 118.6 84 65.5
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 3.6e-25 118.2 89 61.8
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 4.7e-25 117.9 92 59.8
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 8.0e-25 117.1 84 65.5
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.0e-24 116.7 88 67.0
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.4e-24 116.3 141 44.0
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 5.2e-24 114.4 88 65.9
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 1.2e-23 113.2 91 64.8
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 2.6e-23 112.1 78 64.1
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 4.4e-23 111.3 70 71.4
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 4.4e-23 111.3 84 61.9
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 7.5e-23 110.5 75 69.3
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 1.3e-22 109.8 93 55.9
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 1.7e-22 109.4 84 60.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.7e-22 108.2 99 54.5
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 4.9e-22 107.8 92 53.3
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 6.3e-22 107.5 84 60.7
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 6.3e-22 107.5 72 68.1
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-21 105.9 86 60.5
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 2.4e-21 105.5 92 57.6
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.1e-21 105.1 84 56.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.0e-21 104.0 71 67.6
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 1.6e-20 102.8 88 61.4
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 2.0e-20 102.4 135 43.0
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.0e-19 100.1 103 50.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 9.5e-18 93.6 69 63.8
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 4.7e-17 91.3 93 52.7
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 6.1e-17 90.9 163 36.8
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 8.9e-16 87.0 66 66.7
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 1.3e-14 83.2 76 51.3
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.7e-14 82.8 49 69.4
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.9e-14 82.0 63 61.9
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 3.7e-14 81.6 49 71.4
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 4.9e-14 81.3 54 64.8
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.9e-14 81.3 61 62.3
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 9.2e-13 77.0 64 60.9
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 2.0e-12 75.9 64 57.8
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.3e-10 68.6 65 55.4
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 1.3e-06 56.6 44 61.4
Haze_08759 Corylus avellana HOM05D007428 ORTHO05D009308 8.3e-06 53.9 30 73.3


User provided reference genes

Program Settings