Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.4e-130 468.0 244 100.0
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 1.4e-78 297.0 219 68.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.3e-76 290.4 213 66.7
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.6e-74 282.7 222 65.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.5e-74 282.0 230 62.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 9.4e-72 274.2 201 66.7
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.1e-71 273.1 201 66.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.4e-69 264.6 201 66.2
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 2.8e-68 262.7 213 61.5
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 6.3e-68 261.5 201 64.7
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.8e-67 260.0 201 64.2
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-66 256.9 201 63.2
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 4.2e-64 248.8 215 60.5
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.2e-63 247.3 211 58.3
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.6e-63 245.7 211 58.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.6e-63 245.7 211 58.3
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 6.1e-63 245.0 218 57.3
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.3e-62 243.0 208 59.6
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.3e-62 243.0 212 58.0
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 5.7e-61 238.4 209 59.8
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 5.7e-61 238.4 232 55.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 5.7e-61 238.4 212 57.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.7e-60 236.9 205 59.5
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 2.2e-60 236.5 208 58.7
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 2.8e-60 236.1 209 57.4
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 6.3e-60 235.0 219 55.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.1e-59 234.2 208 56.2
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.4e-59 233.8 208 56.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 3.1e-59 232.6 208 57.7
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.1e-59 232.6 208 58.2
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.1e-59 232.3 202 57.4
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.2e-58 230.7 220 52.3
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.2e-58 230.7 225 54.7
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 2.0e-58 229.9 223 54.7
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.6e-58 229.6 217 55.8
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.6e-58 229.6 223 54.3
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.6e-58 229.6 220 54.1
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.6e-58 229.6 219 54.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.5e-58 228.8 227 51.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.3e-57 227.3 213 56.3
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.3e-57 227.3 209 56.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.2e-57 226.5 209 56.0
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.2e-57 226.5 208 53.8
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.9e-57 226.1 205 57.1
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 8.5e-57 224.6 223 54.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 8.5e-57 224.6 212 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.5e-56 223.8 201 55.2
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.9e-56 223.4 210 56.2
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.9e-56 223.4 209 55.0
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.2e-56 222.6 210 55.2
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.2e-56 222.2 210 55.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 5.5e-56 221.9 223 53.8
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.2e-56 221.5 205 57.1
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 7.2e-56 221.5 210 56.7
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 9.4e-56 221.1 223 53.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 9.4e-56 221.1 210 55.2
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.2e-55 220.7 221 53.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.6e-55 220.3 210 54.8
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 1.6e-55 220.3 210 54.8
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.6e-55 220.3 210 54.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.1e-55 219.9 219 54.3
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 6.1e-55 218.4 219 51.1
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 8.0e-55 218.0 211 55.0
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.8e-54 216.9 217 54.4
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.7e-54 214.9 208 54.3
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 8.8e-54 214.5 210 54.8
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.8e-54 214.5 216 53.7
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 8.8e-54 214.5 219 53.0
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.2e-53 214.2 216 54.2
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.0e-53 213.4 216 53.7
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.0e-53 213.4 174 59.2
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 2.6e-53 213.0 206 51.9
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.3e-53 212.6 240 50.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.3e-53 212.6 215 54.4
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 3.3e-53 212.6 217 53.5
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 4.4e-53 212.2 208 54.3
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.5e-53 211.5 204 56.9
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 9.7e-53 211.1 216 52.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.7e-52 210.3 169 60.9
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.2e-52 209.9 214 52.3
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.2e-52 208.0 219 49.8
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.8e-51 206.8 203 54.7
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.4e-51 206.5 217 51.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 7.0e-51 204.9 255 45.1
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 7.0e-51 204.9 231 48.9
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.5e-50 202.6 162 63.6
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 3.5e-50 202.6 235 47.7
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.3e-49 200.7 207 50.7
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.5e-49 198.4 173 59.0
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 6.5e-49 198.4 179 55.9
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.5e-48 197.2 208 51.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.9e-48 196.8 183 56.3
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 9.4e-48 194.5 190 53.2
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 9.4e-48 194.5 214 50.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.6e-47 193.7 219 47.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 6.1e-47 191.8 222 50.5
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.8e-46 190.3 167 56.3
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.0e-46 189.5 212 48.1
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.0e-46 189.5 207 44.4
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.0e-46 189.1 298 40.6
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.4e-43 179.9 152 59.2
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-43 179.5 218 47.7
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.9e-41 172.9 216 44.4
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.9e-40 170.2 152 57.9
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.2e-40 168.3 188 48.4
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 9.5e-40 167.9 175 52.6
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.6e-39 167.2 204 50.0
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 2.8e-39 166.4 142 59.9
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-38 163.7 249 42.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.9e-36 155.6 259 41.3
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.4e-35 154.1 119 59.7
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 9.2e-35 151.4 149 57.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.2e-34 151.0 136 58.8
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 8.6e-33 144.8 231 38.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 7.3e-32 141.7 131 51.9
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 9.5e-32 141.4 160 53.8
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.8e-30 137.1 113 61.9
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.8e-30 137.1 216 40.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.3e-30 136.7 132 54.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.4e-29 132.9 157 50.3
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.2e-26 124.4 213 37.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.0e-26 122.1 145 46.2
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 6.6e-25 118.6 162 43.8
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 8.6e-25 118.2 213 34.7
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.3e-20 104.4 149 39.6
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.9e-20 103.2 208 35.1
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.9e-20 102.4 90 57.8
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.5e-18 96.3 92 54.3
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.0e-17 94.7 186 37.6
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.9e-17 92.8 100 50.0
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 5.1e-17 92.4 211 31.8
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.8e-15 86.7 208 33.2
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 6.2e-15 85.5 99 46.5
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.2e-12 77.0 174 36.2
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.9e-12 76.6 58 67.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.1e-11 74.7 84 50.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 7.8e-10 68.6 87 51.7
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.0e-09 68.2 87 51.7
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 8.1e-07 58.5 66 51.5
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.8e-06 57.4 77 44.2
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 4.0e-06 56.2 88 44.3
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 4.0e-06 56.2 50 60.0


User provided reference genes

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