Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_00697 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.6e-141 506.1 271 100.0
SEGI_13258 Sequoiadendron giganteum HOM05D000862 ORTHO05D386750 1.0e-79 300.8 202 75.2
SEGI_40102 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.1e-73 280.8 201 70.6
SEGI_04793 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 2.5e-57 226.5 200 60.5
SEGI_10130 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.5e-41 174.1 196 48.0
SEGI_11682 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 2.1e-40 170.2 194 49.0
SEGI_22564 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 2.1e-40 170.2 200 49.5
SEGI_10515 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 4.7e-40 169.1 191 48.7
SEGI_08572 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.1e-39 167.9 171 48.0
SEGI_08996 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 8.6e-34 148.3 217 41.5
SEGI_10854 Sequoiadendron giganteum HOM05D000862 ORTHO05D384241 6.2e-24 115.5 135 47.4
SEGI_26697 Sequoiadendron giganteum HOM05D000862 ORTHO05D012168 9.6e-17 91.7 125 41.6
EL10Ac1g00598 Beta vulgaris HOM05D000862 ORTHO05D000943 3.5e-11 73.2 95 40.0
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.0e-10 71.6 100 39.0
Gohir.A06G006900 Gossypium hirsutum HOM05D000862 ORTHO05D000943 2.3e-10 70.5 99 43.4
Gorai.010G007400 Gossypium raimondii HOM05D000862 ORTHO05D000943 2.3e-10 70.5 99 43.4
PSO210G4227 Papaver somniferum HOM05D000862 ORTHO05D000943 3.0e-10 70.1 112 37.5
PSO210G7120 Papaver somniferum HOM05D000862 ORTHO05D000943 3.9e-10 69.7 112 37.5
Medtr2g100595 Medicago truncatula HOM05D000862 ORTHO05D000943 2.5e-09 67.0 101 42.6
Aqoxy5G01522 Aquilegia oxysepala HOM05D000862 ORTHO05D000943 3.3e-09 66.6 101 39.6
CsaV3_3G045300 Cucumis sativus L. HOM05D000125 ORTHO05D000120 3.3e-09 66.6 108 35.2
CSS0029292 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D000943 4.3e-09 66.2 125 35.2
PSO541G2558 Papaver somniferum HOM05D000862 ORTHO05D000943 4.3e-09 66.2 97 46.4
PSO675G6624 Papaver somniferum HOM05D000862 ORTHO05D000943 4.3e-09 66.2 97 46.4
Rhsim06G0028200 Rhododendron simsii HOM05D000862 ORTHO05D000943 5.6e-09 65.9 98 39.8
TWI56G0138 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 5.6e-09 65.9 102 37.3
EL10Ac1g00597 Beta vulgaris HOM05D000862 ORTHO05D000943 7.3e-09 65.5 97 34.0
CiPaw.01G227800 Carya illinoinensis HOM05D000862 ORTHO05D000943 7.3e-09 65.5 101 38.6
CDE05G1408 Ceratophyllum demersum HOM05D000862 ORTHO05D000943 9.6e-09 65.1 113 40.7
Aa31LG4G5670 Aethionema arabicum HOM05D000862 ORTHO05D000943 1.3e-08 64.7 105 38.1
AT1G19715 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 1.6e-08 64.3 99 38.4
EL10Ac1g00596 Beta vulgaris HOM05D000862 ORTHO05D000943 1.6e-08 64.3 128 35.9
Cc10_g02350 Coffea canephora HOM05D000862 ORTHO05D000943 1.6e-08 64.3 98 41.8
QL05p016350 Quercus lobata HOM05D000862 ORTHO05D000943 1.6e-08 64.3 101 38.6
Thecc.06G106600 Theobroma cacao HOM05D000862 ORTHO05D000943 1.6e-08 64.3 101 40.6
GSVIVG01009788001 Vitis vinifera HOM05D000862 ORTHO05D000943 1.6e-08 64.3 102 38.2
Ah.12g065440 Amaranthus hybridus HOM05D000862 ORTHO05D000943 2.1e-08 63.9 126 35.7
ATR0789G026 Amborella trichopoda HOM05D000862 ORTHO05D000943 2.1e-08 63.9 103 36.9
AUR62014466 Chenopodium quinoa HOM05D000862 ORTHO05D000003 2.1e-08 63.9 100 36.0
Nitab4.5_0000029g0100 Nicotiana tabacum HOM05D000862 ORTHO05D000943 2.1e-08 63.9 102 39.2
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 2.1e-08 63.9 101 39.6
vmacro21687 Vaccinium macrocarpon HOM05D000862 ORTHO05D000943 2.1e-08 63.9 99 38.4
vmacro23427 Vaccinium macrocarpon HOM05D000862 ORTHO05D000943 2.1e-08 63.9 99 38.4
Cpa.g.c31450.2 Carica papaya HOM05D000862 ORTHO05D000943 2.8e-08 63.5 102 40.2
CsaV3_2G029090 Cucumis sativus L. HOM05D000862 ORTHO05D000943 2.8e-08 63.5 102 40.2
Dinv37939 Davidia involucrata HOM05D000862 ORTHO05D000943 2.8e-08 63.5 101 39.6
Hund26884 Selenicereus undatus HOM05D000862 ORTHO05D000943 2.8e-08 63.5 125 35.2
Cpa.g.sc131.20 Carica papaya HOM05D000862 ORTHO05D000943 3.6e-08 63.2 101 40.6
Potri.005G232400 Populus trichocarpa HOM05D000862 ORTHO05D000943 3.6e-08 63.2 103 39.8
CAN.G960.45 Capsicum annuum HOM05D000862 ORTHO05D000943 4.8e-08 62.8 102 37.3
Atru.chr1.3615 Acer truncatum HOM05D000862 ORTHO05D000943 6.2e-08 62.4 101 37.6
CSS0018130 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D000943 6.2e-08 62.4 101 37.6
CANSAT25G2036 Cannabis sativa HOM05D000862 ORTHO05D000943 6.2e-08 62.4 98 41.8
MELO3C010973.2 Cucumis melo HOM05D000862 ORTHO05D000943 6.2e-08 62.4 102 39.2
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 8.1e-08 62.0 101 39.6
Lj4A33T79 Lonicera japonica HOM05D000862 ORTHO05D000943 8.1e-08 62.0 141 31.9
Sc15g0007200 Simmondsia chinensis HOM05D000862 ORTHO05D000943 8.1e-08 62.0 101 37.6
AL1G32440 Arabidopsis lyrata HOM05D000862 ORTHO05D000943 1.1e-07 61.6 103 35.9
MBI01_g12677_MAGBIO Magnolia biondii HOM05D000862 ORTHO05D000943 1.1e-07 61.6 96 39.6
QL02p010285 Quercus lobata HOM05D000862 ORTHO05D000943 1.1e-07 61.6 103 41.7
Solyc10g078600.3 Solanum lycopersicum HOM05D000862 ORTHO05D000943 1.1e-07 61.6 102 39.2
PGSC0003DMG400008353 Solanum tuberosum HOM05D000862 ORTHO05D000943 1.1e-07 61.6 102 39.2
BolC8t49606H Brassica oleracea HOM05D000862 ORTHO05D000943 1.4e-07 61.2 105 35.2
BraA08t34905Z Brassica rapa HOM05D000862 ORTHO05D000943 1.4e-07 61.2 105 35.2
DCAR_009958 Daucus carota HOM05D000862 ORTHO05D000943 1.4e-07 61.2 95 40.0
SEGI_14333 Sequoiadendron giganteum HOM05D000862 ORTHO05D000943 1.4e-07 61.2 38 71.1
THA.LOC104809315 Tarenaya hassleriana HOM05D000862 ORTHO05D000943 1.4e-07 61.2 109 39.4
TAR624G1090 Trochodendron aralioides HOM05D000862 ORTHO05D000943 1.4e-07 61.2 101 36.6
BcaB03g12902 Brassica carinata HOM05D000862 ORTHO05D000943 1.8e-07 60.8 105 36.2
Ciclev10026553m.g Citrus clementina HOM05D000862 ORTHO05D000943 1.8e-07 60.8 101 38.6
Gohir.A10G062600 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.8e-07 60.8 101 38.6
Gohir.D10G064300 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.8e-07 60.8 101 38.6
Nn6g35392 Nelumbo nucifera HOM05D000862 ORTHO05D000943 1.8e-07 60.8 101 37.6
Sabra02G0024300 Salix brachista HOM05D000862 ORTHO05D000943 1.8e-07 60.8 103 38.8
Sopen10g029230 Solanum pennellii HOM05D000862 ORTHO05D000943 1.8e-07 60.8 102 39.2
TWI12G0321 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 1.8e-07 60.8 97 38.1
TAR497G0005 Trochodendron aralioides HOM05D000862 ORTHO05D000943 1.8e-07 60.8 101 35.6
VMungo0647G0143 Vigna mungo HOM05D000862 ORTHO05D000943 1.8e-07 60.8 103 37.9
arahy.Tifrunner.gnm1.ann1.8VYI8C Arachis hypogaea HOM05D000862 ORTHO05D000943 2.4e-07 60.5 102 38.2
A08p29700 Brassica napus HOM05D000862 ORTHO05D000943 2.4e-07 60.5 105 35.2
Ciclev10000604m.g Citrus clementina HOM05D000862 ORTHO05D000943 2.4e-07 60.5 102 38.2
Duzib093G0362 Durio zibethinus HOM05D000862 ORTHO05D000943 2.4e-07 60.5 97 41.2
arahy.Tifrunner.gnm1.ann1.VI7NX3 Arachis hypogaea HOM05D000862 ORTHO05D000943 3.1e-07 60.1 102 38.2
A06p15840 Brassica napus HOM05D000862 ORTHO05D000943 3.1e-07 60.1 107 38.3
C05p18160 Brassica napus HOM05D000862 ORTHO05D000003 3.1e-07 60.1 107 38.3
BolC5t30523H Brassica oleracea HOM05D000862 ORTHO05D000003 3.1e-07 60.1 107 38.3
BraA06t24694Z Brassica rapa HOM05D000862 ORTHO05D000943 3.1e-07 60.1 107 38.3
Haze_22550 Corylus avellana HOM05D000862 ORTHO05D000943 3.1e-07 60.1 101 38.6
Gohir.D06G002500 Gossypium hirsutum HOM05D000862 ORTHO05D000943 3.1e-07 60.1 102 38.2
Lalb_Chr18g0051031 Lupinus albus HOM05D000862 ORTHO05D000943 3.1e-07 60.1 104 40.4
Manes.05G154000 Manihot esculenta HOM05D000862 ORTHO05D000943 3.1e-07 60.1 98 40.8
vmacro17004 Vaccinium macrocarpon HOM05D000862 ORTHO05D000943 3.1e-07 60.1 101 36.6
BcaB07g31985 Brassica carinata HOM05D000862 ORTHO05D000943 4.0e-07 59.7 107 38.3
Carub.0001s1926 Capsella rubella HOM05D000862 ORTHO05D000943 4.0e-07 59.7 102 36.3
ClCG08G014690 Citrullus lanatus HOM05D000862 ORTHO05D000003 4.0e-07 59.7 102 38.2
Glyma.02G227500 Glycine max HOM05D000862 ORTHO05D000943 4.0e-07 59.7 102 36.3
Oeu030604.1 Olea europaea HOM05D000862 ORTHO05D000943 4.0e-07 59.7 98 37.8
Potri.012G140001 Populus trichocarpa HOM05D000862 ORTHO05D000943 4.0e-07 59.7 101 36.6
Atru.chr13.394 Acer truncatum HOM05D000862 ORTHO05D000943 5.3e-07 59.3 102 37.3
Actinidia22511 Actinidia chinensis HOM05D000862 ORTHO05D000943 5.3e-07 59.3 98 36.7
ATR0665G023 Amborella trichopoda HOM05D000862 ORTHO05D000943 5.3e-07 59.3 102 39.2
Glyma.15G022500 Glycine max HOM05D000862 ORTHO05D000943 5.3e-07 59.3 101 39.6
QL02p010229 Quercus lobata HOM05D000862 ORTHO05D000943 5.3e-07 59.3 102 37.3
Sed0007237 Sechium edule HOM05D000862 ORTHO05D000003 5.3e-07 59.3 102 37.3
C08p19700 Brassica napus HOM05D000862 ORTHO05D000943 6.9e-07 58.9 105 34.3
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 6.9e-07 58.9 99 33.3
Dinv39464 Davidia involucrata HOM05D000862 ORTHO05D000943 6.9e-07 58.9 98 37.8
Duzib235G0072 Durio zibethinus HOM05D000862 ORTHO05D000943 6.9e-07 58.9 101 37.6
Glyma.13G352300 Glycine max HOM05D000862 ORTHO05D000943 6.9e-07 58.9 101 38.6
Gorai.011G068300 Gossypium raimondii HOM05D000862 ORTHO05D000943 6.9e-07 58.9 101 37.6
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 6.9e-07 58.9 85 42.4
Thecc.08G034700 Theobroma cacao HOM05D000862 ORTHO05D000943 6.9e-07 58.9 102 38.2
Actinidia09016 Actinidia chinensis HOM05D000862 ORTHO05D000943 9.0e-07 58.5 132 33.3
Gohir.A05G189750 Gossypium hirsutum HOM05D000862 ORTHO05D000943 9.0e-07 58.5 102 40.2
QL05p082049 Quercus lobata HOM05D000862 ORTHO05D000943 9.0e-07 58.5 102 32.4
BcaB05g24797 Brassica carinata HOM05D000862 ORTHO05D000943 1.2e-06 58.2 97 37.1
MELO3C003819.2 Cucumis melo HOM05D000125 ORTHO05D000120 1.2e-06 58.2 102 34.3
Gohir.D05G193050 Gossypium hirsutum HOM05D000862 ORTHO05D000943 1.2e-06 58.2 102 40.2
Gorai.009G198200 Gossypium raimondii HOM05D000862 ORTHO05D000003 1.2e-06 58.2 102 40.2
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.2e-06 58.2 87 40.2
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.2e-06 58.2 87 40.2
QL07p019673 Quercus lobata HOM05D000862 ORTHO05D000943 1.2e-06 58.2 98 35.7
RcHm_v2.0_Chr2g0142241 Rosa chinensis HOM05D000862 ORTHO05D000943 1.2e-06 58.2 104 36.5
TPR.G34586 Trifolium pratense HOM05D000862 ORTHO05D000943 1.2e-06 58.2 97 39.2
ATR0789G103 Amborella trichopoda HOM05D000862 ORTHO05D000943 1.5e-06 57.8 103 35.0
AT1G73040 Arabidopsis thaliana HOM05D000862 ORTHO05D000943 1.5e-06 57.8 97 37.1
A02p18420 Brassica napus HOM05D000862 ORTHO05D000943 1.5e-06 57.8 97 37.1
CiPaw.07G156100 Carya illinoinensis HOM05D000862 ORTHO05D000943 1.5e-06 57.8 98 35.7
ECA232G0115 Erigeron canadensis HOM05D000862 ORTHO05D000943 1.5e-06 57.8 101 38.6
Eucgr.F01603 Eucalyptus grandis HOM05D000862 ORTHO05D000943 1.5e-06 57.8 104 38.5
Medtr5g071200 Medicago truncatula HOM05D000862 ORTHO05D000943 1.5e-06 57.8 97 39.2
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 1.5e-06 57.8 82 41.5
Zm00001eb342390 Zea mays HOM05D000862 ORTHO05D000943 1.5e-06 57.8 114 34.2
Zm00001eb369990 Zea mays HOM05D000862 ORTHO05D000943 1.5e-06 57.8 108 36.1
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 2.0e-06 57.4 102 35.3
BcaC03g15440 Brassica carinata HOM05D000862 ORTHO05D000943 2.0e-06 57.4 97 36.1
BolC2t09101H Brassica oleracea HOM05D000862 ORTHO05D000943 2.0e-06 57.4 97 36.1
CANSAT25G1772 Cannabis sativa HOM05D000862 ORTHO05D000943 2.0e-06 57.4 103 35.9
COL.COLO4_30594 Corchorus olitorius HOM05D000862 ORTHO05D000943 2.0e-06 57.4 101 37.6
Thhalv10019210m.g Eutrema salsugineum HOM05D000862 ORTHO05D000943 2.0e-06 57.4 97 38.1
Manes.04G136900 Manihot esculenta HOM05D000862 ORTHO05D000943 2.0e-06 57.4 101 35.6
Nn5g29733 Nelumbo nucifera HOM05D000862 ORTHO05D000943 2.0e-06 57.4 101 37.6
Peaxi162Scf00038g01229 Petunia axillaris HOM05D000862 ORTHO05D000943 2.0e-06 57.4 101 36.6
Sed0026682 Sechium edule HOM05D000862 ORTHO05D000943 2.0e-06 57.4 102 38.2
MD08G1023700 Malus domestica HOM05D000862 ORTHO05D000943 2.6e-06 57.0 102 34.3
Psat2g057640 Pisum sativum HOM05D000862 ORTHO05D000943 2.6e-06 57.0 114 34.2
Aqoxy7G03933 Aquilegia oxysepala HOM05D000862 ORTHO05D000943 3.4e-06 56.6 101 35.6
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.4e-06 56.6 102 35.3
BraA02t06881Z Brassica rapa HOM05D000862 ORTHO05D000943 3.4e-06 56.6 97 36.1
CAN.G1668.2 Capsicum annuum HOM05D000862 ORTHO05D000943 3.4e-06 56.6 101 38.6
Prupe.1G372900 Prunus persica HOM05D000862 ORTHO05D000943 3.4e-06 56.6 102 34.3
Sabra12G0105100 Salix brachista HOM05D000862 ORTHO05D000943 3.4e-06 56.6 101 34.7
GSVIVG01016899001 Vitis vinifera HOM05D000862 ORTHO05D000943 3.4e-06 56.6 101 36.6
Zm00001eb292320 Zea mays HOM05D000862 ORTHO05D000943 3.4e-06 56.6 101 36.6
Ah.12g065430 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.5e-06 56.2 104 33.7
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 4.5e-06 56.2 88 38.6
EL10Ac9g21139 Beta vulgaris HOM05D000862 ORTHO05D000943 4.5e-06 56.2 107 33.6
MD15G1021200 Malus domestica HOM05D000862 ORTHO05D000943 4.5e-06 56.2 104 32.7
PGR083G2017 Punica granatum HOM05D000862 ORTHO05D000943 4.5e-06 56.2 102 38.2
Sc12g0009970 Simmondsia chinensis HOM05D000862 ORTHO05D000943 4.5e-06 56.2 107 35.5
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 4.5e-06 56.2 89 41.6
Sopen03g040110 Solanum pennellii HOM05D000862 ORTHO05D000943 4.5e-06 56.2 101 36.6
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 5.8e-06 55.8 103 35.9
AUR62022297 Chenopodium quinoa HOM05D000862 ORTHO05D000943 5.8e-06 55.8 106 35.8
Nn5g29732 Nelumbo nucifera HOM05D000862 ORTHO05D000943 5.8e-06 55.8 102 34.3
Potri.002G030400 Populus trichocarpa HOM05D000862 ORTHO05D000943 5.8e-06 55.8 97 36.1
SalBow8G4155 Salvia bowleyana HOM05D000862 ORTHO05D000943 5.8e-06 55.8 100 37.0
SalBow8G4313 Salvia bowleyana HOM05D000862 ORTHO05D000943 5.8e-06 55.8 100 37.0
Solyc03g121300.2 Solanum lycopersicum HOM05D000862 ORTHO05D000943 5.8e-06 55.8 101 36.6
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 5.8e-06 55.8 91 38.5
Cc04_g02280 Coffea canephora HOM05D000862 ORTHO05D000943 7.6e-06 55.5 101 33.7
Os05g0508400 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D000943 7.6e-06 55.5 122 34.4
QL02p010275 Quercus lobata HOM05D000862 ORTHO05D000943 7.6e-06 55.5 97 40.2
Sp1g17550 Schrenkiella parvula HOM05D000862 ORTHO05D000943 7.6e-06 55.5 103 35.0
unitig_52.g17101 Utricularia gibba HOM05D000862 ORTHO05D000943 7.6e-06 55.5 97 37.1
GSVIVG01016900001 Vitis vinifera HOM05D000862 ORTHO05D000943 7.6e-06 55.5 101 34.7
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 9.9e-06 55.1 113 35.4
DCAR_007605 Daucus carota HOM05D000862 ORTHO05D000943 9.9e-06 55.1 113 35.4
Migut.D00981 Erythranthe guttata HOM05D000862 ORTHO05D000943 9.9e-06 55.1 101 35.6
Thhalv10007145m.g Eutrema salsugineum HOM05D000862 ORTHO05D000943 9.9e-06 55.1 103 34.0
FAN03G2910 Fragaria x ananassa HOM05D000862 ORTHO05D000943 9.9e-06 55.1 101 35.6
FAN05G3307 Fragaria x ananassa HOM05D000862 ORTHO05D000943 9.9e-06 55.1 101 35.6
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 9.9e-06 55.1 82 40.2
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 9.9e-06 55.1 117 33.3


User provided reference genes

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