Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.6e-189 666.0 362 100.0
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.0e-150 536.2 364 80.8
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.3e-141 506.9 355 81.1
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 2.7e-139 499.2 330 85.2
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 8.0e-136 487.6 310 85.8
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 6.8e-135 484.6 354 77.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 2.4e-132 476.1 343 75.8
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 4.1e-132 475.3 365 72.6
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 9.2e-132 474.2 371 73.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 2.7e-131 472.6 371 73.9
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 7.8e-131 471.1 368 74.7
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 3.8e-130 468.8 354 74.0
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 6.6e-130 468.0 359 72.7
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 1.1e-129 467.2 344 75.6
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.5e-129 466.8 364 72.8
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 2.5e-129 466.1 283 86.9
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 3.3e-129 465.7 353 73.1
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.3e-129 464.5 306 80.4
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.1e-128 463.0 353 73.1
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 3.6e-128 462.2 347 74.6
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 6.1e-128 461.5 360 71.7
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 6.1e-128 461.5 359 71.9
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 1.0e-127 460.7 298 83.6
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.3e-127 459.5 359 72.1
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 3.0e-127 459.1 366 70.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.0e-127 458.8 267 91.4
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 8.9e-127 457.6 368 70.7
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.2e-126 457.2 298 82.6
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.2e-126 457.2 260 92.7
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 9.8e-126 454.1 359 71.6
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.2e-125 453.0 302 80.8
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 2.9e-125 452.6 335 74.9
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.1e-124 450.7 323 78.0
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.8e-124 449.9 295 82.7
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.4e-124 449.5 295 81.4
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 2.4e-124 449.5 337 74.2
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 2.4e-124 449.5 337 74.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 3.2e-124 449.1 357 70.6
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 3.2e-124 449.1 330 73.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 5.4e-124 448.4 295 80.7
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 5.4e-124 448.4 295 80.3
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 7.0e-124 448.0 359 71.6
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 7.0e-124 448.0 332 75.9
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.6e-123 446.8 326 73.9
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.6e-123 446.8 325 75.4
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.0e-123 446.4 277 84.8
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 2.0e-123 446.4 283 85.2
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.7e-123 446.0 325 74.8
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.5e-123 445.7 277 85.6
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.5e-123 445.7 324 75.3
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 4.6e-123 445.3 275 85.8
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 4.6e-123 445.3 347 73.8
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.6e-123 445.3 351 72.4
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.0e-122 444.1 283 84.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.7e-122 443.4 330 73.0
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.7e-122 443.4 353 71.7
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 2.3e-122 443.0 291 82.8
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.0e-122 441.8 277 83.8
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 8.6e-122 441.0 292 80.8
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 8.6e-122 441.0 359 69.9
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.5e-121 440.3 367 68.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.9e-121 439.9 288 82.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.5e-121 439.5 296 79.4
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.6e-121 438.3 301 80.4
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 2.1e-120 436.4 288 80.6
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.1e-120 436.4 288 80.6
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 3.6e-120 435.6 348 71.3
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 6.2e-120 434.9 288 81.2
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 6.2e-120 434.9 357 69.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 6.2e-120 434.9 298 78.9
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.0e-119 434.1 288 81.2
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 2.3e-119 433.0 290 79.3
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 3.1e-119 432.6 349 69.3
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 3.1e-119 432.6 300 78.3
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 5.2e-119 431.8 316 75.9
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 6.8e-119 431.4 344 71.5
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 1.2e-118 430.6 264 85.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.2e-118 430.6 284 81.0
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.0e-118 429.9 322 73.9
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.4e-118 428.7 264 84.8
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.4e-118 428.7 381 65.4
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.9e-117 426.0 279 82.4
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 8.3e-117 424.5 334 71.6
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.4e-116 423.7 319 74.3
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 2.0e-115 419.9 365 66.3
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 9.5e-113 411.0 281 77.6
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.7e-109 400.2 267 78.3
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 6.4e-109 398.3 296 74.7
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 8.3e-109 397.9 319 71.5
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 4.1e-108 395.6 335 70.1
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 9.5e-105 384.4 349 64.5
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 3.6e-104 382.5 251 80.1
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.1e-103 380.9 318 70.4
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.8e-102 375.2 266 75.9
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 7.6e-102 374.8 254 77.2
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 8.4e-101 371.3 321 68.5
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.2e-99 367.5 368 61.4
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 2.1e-99 366.7 368 61.1
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.1e-97 360.9 258 74.4
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.9e-97 360.1 218 86.2
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 4.3e-97 359.0 321 65.1
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 7.3e-97 358.2 311 66.9
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 8.1e-96 354.8 265 70.9
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-91 340.1 192 92.2
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 5.6e-89 332.0 240 74.6
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 9.6e-89 331.3 283 65.4
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.4e-85 318.5 293 66.2
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.4e-84 317.4 280 67.9
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 2.5e-81 306.6 256 64.5
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 6.0e-75 285.4 247 66.4
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.3e-69 267.7 244 59.0
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.1e-67 260.4 245 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.9e-62 242.3 304 52.6
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 3.8e-61 239.6 277 52.7
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 1.6e-59 234.2 326 51.8
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.6e-59 233.0 202 67.3
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 9.7e-57 224.9 230 61.7
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 4.4e-49 199.5 139 79.1
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.8e-48 196.1 135 80.0
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 7.4e-41 172.2 98 91.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 7.0e-39 165.6 142 69.7
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 2.2e-37 160.6 204 54.9
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.8e-34 151.0 93 83.9
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.3e-33 146.7 113 72.6
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 7.5e-33 145.6 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.2e-32 144.1 157 56.1
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 3.8e-21 106.7 80 70.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.2e-16 90.9 96 54.2
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 5.4e-15 86.3 60 71.7
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 5.9e-14 82.8 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 8.9e-10 68.9 47 72.3
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 4.6e-06 56.6 41 70.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 6.0e-06 56.2 29 100.0


User provided reference genes

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