Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.5e-266 921.0 452 100.0
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.4e-233 812.8 452 90.5
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.4e-222 776.2 468 84.0
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.0e-217 758.4 452 83.4
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 5.2e-217 757.7 452 83.4
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 8.8e-217 756.9 519 75.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 2.0e-216 755.7 452 83.2
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 3.4e-216 755.0 452 83.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.7e-216 754.2 451 82.5
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 9.8e-216 753.4 452 83.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.7e-215 752.7 451 82.7
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 2.8e-215 751.9 452 82.7
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.8e-215 751.9 452 82.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.8e-215 751.1 452 83.2
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 4.8e-215 751.1 452 82.7
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.3e-215 750.7 451 83.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 5.4e-214 747.7 452 82.1
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.4e-214 747.7 449 82.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.2e-213 746.5 449 82.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.6e-213 746.1 452 82.7
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.7e-213 745.3 452 81.4
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 3.5e-213 745.0 452 82.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 3.5e-213 745.0 452 82.1
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.5e-213 744.6 452 81.6
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 4.5e-213 744.6 452 82.1
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-212 743.4 452 81.9
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.3e-212 743.0 452 82.3
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.3e-212 743.0 450 82.2
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.7e-212 742.7 452 81.2
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.9e-212 741.9 452 81.0
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.9e-212 741.9 452 82.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.9e-212 741.9 452 81.0
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 3.8e-212 741.5 449 82.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.0e-212 741.1 452 81.2
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.1e-211 740.0 453 82.1
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.5e-211 739.6 452 81.4
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.2e-211 738.4 450 80.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.2e-211 738.4 449 81.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.2e-211 738.0 449 82.0
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 7.2e-211 737.3 452 81.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 9.5e-211 736.9 450 81.8
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.6e-210 736.1 450 81.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-210 735.7 449 81.7
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 2.1e-210 735.7 450 81.6
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.1e-210 735.7 452 80.5
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 4.7e-210 734.6 452 81.4
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 8.0e-210 733.8 449 80.6
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 8.0e-210 733.8 452 80.3
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.0e-209 733.4 449 81.3
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.4e-209 733.0 452 80.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.8e-209 732.6 452 81.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.3e-209 732.3 451 80.7
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.3e-209 732.3 452 80.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 3.0e-209 731.9 520 72.9
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-209 731.5 449 81.1
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 5.2e-209 731.1 452 79.6
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 6.8e-209 730.7 452 79.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 8.9e-209 730.3 449 80.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 8.9e-209 730.3 452 80.3
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 8.9e-209 730.3 452 81.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-208 729.9 452 79.4
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.2e-208 729.9 452 79.4
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-208 729.9 452 79.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 2.0e-208 729.2 452 80.1
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.0e-208 729.2 452 79.2
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.6e-208 728.8 452 79.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.6e-208 728.8 464 79.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.6e-208 728.8 450 80.7
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.4e-208 728.4 452 79.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 3.4e-208 728.4 453 79.5
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 4.4e-208 728.0 453 78.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 5.7e-208 727.6 452 79.0
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.7e-208 727.6 453 78.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 9.8e-208 726.9 452 79.0
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.3e-207 726.5 452 78.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.3e-207 726.5 450 80.2
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.7e-207 726.1 452 79.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.7e-207 726.1 452 80.5
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.7e-207 726.1 452 80.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.7e-207 726.1 450 80.7
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.7e-207 726.1 454 80.4
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.8e-207 725.3 452 79.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.8e-207 725.3 452 79.4
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 3.7e-207 724.9 452 78.8
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 3.7e-207 724.9 450 80.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.9e-207 724.5 494 75.5
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 6.3e-207 724.2 453 79.7
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 8.3e-207 723.8 450 80.7
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.4e-206 723.0 452 79.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 3.1e-206 721.8 453 79.0
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.1e-206 721.8 452 79.2
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-206 721.1 453 78.8
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.4e-206 721.1 453 78.8
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.4e-206 721.1 452 79.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 9.2e-206 720.3 452 79.0
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.6e-205 719.5 452 78.1
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 7.8e-205 717.2 452 79.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.3e-204 716.5 452 79.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.9e-204 715.3 452 78.1
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.8e-204 714.9 452 78.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 3.8e-204 714.9 453 79.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.9e-203 712.6 449 78.4
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.1e-202 709.1 452 77.2
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.0e-201 704.9 442 79.4
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.0e-201 704.9 452 77.4
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.2e-201 704.5 452 77.7
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 8.9e-201 703.7 448 78.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.5e-200 703.0 448 78.1
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-199 699.5 428 81.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.9e-199 698.0 449 76.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.4e-198 696.4 423 82.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 9.2e-198 693.7 449 76.6
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.7e-197 692.2 426 81.0
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 3.3e-195 685.3 495 69.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.3e-195 685.3 453 75.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.4e-193 679.9 431 80.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.2e-190 667.2 456 73.5
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 9.2e-190 667.2 401 82.0
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.6e-189 666.4 458 74.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.2e-186 656.8 399 81.2
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 6.4e-183 644.4 401 79.1
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 7.1e-182 641.0 444 72.7
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.7e-180 636.3 445 72.1
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.3e-180 636.0 451 69.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 8.1e-178 627.5 452 72.3
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.7e-167 593.2 448 65.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.1e-166 590.5 447 65.5
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.6e-165 586.6 449 66.1
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.0e-164 583.9 363 79.9
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.7e-164 583.2 425 66.1
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.8e-154 549.3 430 66.7
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 4.8e-154 548.5 430 63.5
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 6.2e-154 548.1 452 63.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.7e-146 522.3 403 68.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.9e-143 511.9 353 75.4
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.7e-133 479.6 443 56.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.3e-123 446.0 288 78.1
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.9e-119 433.0 301 71.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.6e-117 427.2 411 55.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.1e-113 414.5 281 74.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 5.3e-113 412.1 428 50.9
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 2.6e-107 393.3 271 73.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 2.2e-103 380.2 282 67.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 9.4e-102 374.8 197 91.4
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.4e-73 280.4 458 38.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.6e-72 276.2 183 76.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.5e-67 261.2 180 70.6
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.6e-67 260.4 430 40.5
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.2e-58 230.7 141 77.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.8e-58 229.9 140 77.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 6.0e-56 222.6 124 83.1
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.4e-50 202.6 130 79.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.8e-20 104.8 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 5.5e-17 93.2 171 39.2


User provided reference genes

Program Settings