Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-124 449.5 269 100.0
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-124 449.5 269 100.0
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.6e-122 441.4 269 98.5
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.6e-86 323.2 267 78.7
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 2.5e-84 316.6 266 77.1
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 2.5e-84 316.6 266 77.1
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.0e-77 294.7 267 73.4
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 8.5e-77 291.6 259 74.1
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 7.2e-76 288.5 260 73.5
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 6.1e-75 285.4 269 65.8
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 2.3e-74 283.5 269 65.4
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.5e-73 280.8 264 70.1
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.2e-72 276.9 268 70.9
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 3.7e-72 276.2 267 70.0
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.2e-70 271.2 265 68.3
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 2.0e-70 270.4 268 69.8
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 4.5e-70 269.2 265 67.9
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 9.4e-68 261.5 265 66.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.2e-67 261.2 262 66.4
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.2e-67 261.2 262 66.4
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.6e-67 260.8 264 67.4
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 3.6e-67 259.6 266 65.4
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 4.7e-67 259.2 258 68.6
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.8e-66 257.3 266 67.3
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.8e-66 257.3 259 68.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-66 256.9 264 65.9
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 5.1e-66 255.8 260 66.9
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.1e-66 255.8 246 57.3
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 6.7e-66 255.4 262 68.3
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.5e-65 254.2 262 66.0
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 4.4e-65 252.7 249 69.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 9.7e-65 251.5 261 69.3
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 9.7e-65 251.5 270 66.3
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 4.8e-64 249.2 260 67.3
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 8.2e-64 248.4 262 66.8
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 8.2e-64 248.4 252 70.6
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.8e-63 247.3 262 65.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 4.1e-63 246.1 267 63.3
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 4.1e-63 246.1 262 65.3
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 5.3e-63 245.7 262 65.6
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 7.0e-63 245.4 259 65.3
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.0e-61 241.5 270 63.7
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.3e-61 241.1 259 63.7
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 2.2e-61 240.4 260 59.2
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 5.0e-61 239.2 261 64.8
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 6.5e-61 238.8 257 64.2
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 3.2e-60 236.5 262 63.4
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 9.4e-60 235.0 260 58.8
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.4e-60 235.0 270 62.2
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 9.4e-60 235.0 268 62.3
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 9.4e-60 235.0 273 49.1
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.7e-59 233.4 261 62.8
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 8.0e-59 231.9 260 64.6
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 8.0e-59 231.9 258 65.5
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.8e-58 230.7 267 62.9
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 5.2e-58 229.2 258 63.6
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 5.2e-58 229.2 265 56.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.6e-57 226.9 267 62.5
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 3.3e-57 226.5 267 61.0
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 3.3e-57 226.5 267 62.5
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 3.3e-57 226.5 270 61.5
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 4.4e-57 226.1 267 61.4
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 5.7e-57 225.7 267 62.2
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 5.7e-57 225.7 267 61.4
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 5.7e-57 225.7 267 61.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 5.7e-57 225.7 267 61.4
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 7.4e-57 225.3 267 61.8
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 9.7e-57 224.9 251 65.3
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 2.8e-56 223.4 267 60.7
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.8e-56 223.4 267 60.3
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 8.2e-56 221.9 267 61.8
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 4.1e-55 219.5 253 62.8
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 5.3e-55 219.2 267 61.0
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 1.2e-54 218.0 236 64.4
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.6e-54 216.9 275 59.3
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.1e-52 211.5 225 68.0
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 8.0e-51 205.3 259 57.9
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 2.2e-48 197.2 215 67.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 4.8e-48 196.1 220 66.4
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 7.0e-47 192.2 216 68.5
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 9.1e-47 191.8 268 57.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 9.1e-47 191.8 222 65.8
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 5.9e-46 189.1 222 65.3
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 7.7e-46 188.7 218 68.8
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.3e-45 188.0 215 66.5
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 2.2e-45 187.2 216 65.7
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.9e-45 186.8 223 65.0
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 1.2e-43 181.4 230 62.6
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 1.6e-43 181.0 220 64.1
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 2.7e-43 180.3 145 63.4
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-40 171.4 145 60.7
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 2.8e-40 170.2 269 52.8
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.4e-39 167.9 273 53.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 2.4e-39 167.2 224 58.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 4.2e-36 156.4 218 60.1
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 2.1e-35 154.1 218 60.1
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.1e-35 152.5 218 59.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 5.2e-34 149.4 254 53.5
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 4.7e-27 126.3 98 68.4
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.6e-21 105.5 55 89.1
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 9.8e-17 92.0 59 74.6
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 9.8e-17 92.0 59 74.6
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.4e-15 88.2 68 61.8
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.6e-14 84.7 223 30.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.7e-13 81.3 67 56.7
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.9e-13 80.1 141 34.0
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 5.6e-12 76.3 48 72.9
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.5e-09 68.2 160 27.5
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 7.6e-09 65.9 228 25.0
Ca_08161_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 1.7e-08 64.7 89 31.5
Ca_17107_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 1.7e-08 64.7 89 31.5
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.2e-08 64.3 48 62.5
Lalb_Chr15g0084821 Lupinus albus HOM05D002007 ORTHO05D000355 2.7e-06 57.4 85 30.6
TPR.G2559 Trifolium pratense HOM05D002007 ORTHO05D000355 3.5e-06 57.0 85 28.2
TPR.G32438 Trifolium pratense HOM05D002007 ORTHO05D000355 3.5e-06 57.0 85 27.1
Lj6g0020415 Lotus japonicus HOM05D002007 ORTHO05D000355 6.0e-06 56.2 82 29.3
Psat5g122600 Pisum sativum HOM05D002007 ORTHO05D000355 6.0e-06 56.2 85 27.1


User provided reference genes

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