Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 0.0e+00 1078.9 573 100.0
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.9e-311 1070.1 573 99.3
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.5e-216 756.5 551 74.0
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.2e-178 630.6 571 62.3
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.7e-178 629.4 571 62.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 7.9e-170 601.3 571 59.7
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.0e-153 547.7 569 54.7
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 2.3e-153 546.6 564 54.6
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 8.2e-151 538.1 556 55.0
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.5e-149 533.9 571 54.6
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 5.0e-148 528.9 559 54.2
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.0e-145 521.2 568 52.5
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.0e-145 521.2 562 53.4
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 5.1e-145 518.8 559 53.5
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 4.3e-144 515.8 571 51.8
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.3e-143 514.2 551 52.6
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.7e-143 513.8 578 54.0
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.4e-142 510.8 572 50.7
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 2.0e-141 506.9 567 52.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.7e-140 503.8 550 51.1
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 2.2e-140 503.4 573 53.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.8e-140 502.7 572 49.5
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 5.0e-140 502.3 576 50.5
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 5.5e-139 498.8 565 50.1
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.2e-139 498.4 572 49.1
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.3e-137 493.4 542 53.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 3.0e-137 493.0 540 52.2
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 5.1e-137 492.3 572 48.8
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 6.7e-137 491.9 564 50.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 8.8e-137 491.5 572 50.3
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 8.8e-137 491.5 567 49.4
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 2.6e-136 490.0 559 50.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 2.6e-136 490.0 589 49.1
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 9.7e-136 488.0 568 49.8
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.3e-135 487.6 554 50.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.8e-135 486.5 539 52.1
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 4.8e-135 485.7 552 51.1
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.4e-134 484.2 570 49.3
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 1.8e-134 483.8 559 52.1
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.5e-133 480.7 561 51.3
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 3.4e-133 479.6 612 46.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.2e-132 476.9 568 48.8
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 8.5e-132 474.9 565 50.4
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 4.2e-131 472.6 556 50.7
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.1e-130 470.3 561 48.8
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.1e-130 470.3 564 49.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.7e-130 469.2 556 50.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.3e-129 466.8 587 48.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.7e-129 465.3 534 49.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 8.8e-129 464.9 562 48.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.0e-128 463.8 563 48.7
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 9.7e-128 461.5 552 48.9
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 2.8e-127 459.9 613 46.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.0e-125 453.8 535 49.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.3e-124 451.1 606 46.7
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-124 450.7 539 49.4
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.8e-124 449.5 547 48.3
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.5e-124 448.4 538 48.5
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.5e-123 447.6 585 48.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.9e-123 447.2 538 48.5
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 5.5e-123 445.7 539 49.4
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.5e-123 445.7 545 48.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 7.2e-123 445.3 539 48.6
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 7.2e-123 445.3 538 49.1
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 7.2e-123 445.3 547 47.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 9.4e-123 444.9 539 48.4
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-122 444.5 543 48.3
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 8.0e-122 441.8 571 46.1
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 8.0e-122 441.8 539 48.1
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.3e-121 440.3 550 47.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 4.0e-121 439.5 579 47.7
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 5.7e-120 435.6 548 46.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 7.5e-120 435.3 525 46.5
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.8e-119 433.3 543 46.8
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.7e-119 433.0 603 45.3
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 4.8e-119 432.6 578 45.8
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 8.2e-119 431.8 583 45.3
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.8e-118 430.6 565 46.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 4.1e-118 429.5 585 45.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 7.0e-118 428.7 497 50.5
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 7.0e-118 428.7 606 44.2
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 9.1e-118 428.3 589 45.2
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.7e-117 426.8 586 45.2
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 3.5e-117 426.4 581 44.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 4.5e-117 426.0 595 45.9
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 1.0e-116 424.9 541 46.8
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 5.0e-116 422.5 583 44.1
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.9e-115 420.6 567 45.9
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.2e-115 419.9 486 50.8
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.2e-115 419.9 592 44.9
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 3.0e-113 413.3 566 44.3
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-112 411.4 452 50.2
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.5e-112 411.0 593 43.8
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 7.5e-112 408.7 571 47.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 4.1e-110 402.9 585 44.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 4.5e-109 399.4 521 47.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.0e-108 398.3 533 44.5
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.9e-107 394.0 561 43.1
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.7e-104 382.5 577 43.2
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 3.7e-103 379.8 557 42.7
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 2.3e-100 370.5 319 59.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 8.9e-97 358.6 553 43.6
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 4.4e-96 356.3 570 39.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.9e-95 353.6 552 41.5
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.1e-94 351.7 310 57.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 4.6e-93 346.3 555 41.8
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 6.0e-93 345.9 604 39.4
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 7.8e-93 345.5 473 44.4
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.0e-92 345.1 570 40.0
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 3.0e-92 343.6 723 36.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 5.8e-88 329.3 524 42.2
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.5e-88 328.9 653 35.4
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 2.1e-85 320.9 486 39.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-84 318.2 533 39.6
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 5.6e-75 286.2 447 40.7
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.8e-72 276.2 550 35.8
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.9e-70 271.2 537 34.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.4e-65 255.0 648 33.2
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.4e-64 250.0 497 35.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.5e-59 234.2 274 46.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.4e-57 227.6 209 56.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.3e-57 226.5 689 29.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 5.4e-54 216.5 410 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.1e-51 208.8 649 28.4
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.8e-49 201.4 550 31.6
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.8e-48 196.4 358 34.4
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.8e-42 176.8 171 51.5
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 6.0e-37 159.8 160 60.6
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 5.7e-35 153.3 142 51.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 9.7e-35 152.5 292 31.8
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 3.7e-34 150.6 484 26.9
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 4.8e-34 150.2 178 52.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.8e-34 150.2 553 29.1
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.6e-29 135.2 278 32.4
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 9.1e-25 119.4 301 29.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.0e-24 118.2 142 47.2
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-20 105.1 78 64.1
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-20 105.1 78 64.1
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 5.7e-19 100.1 166 37.3
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 3.5e-16 90.9 129 47.3
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.7e-07 62.0 106 35.8
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 3.8e-07 60.8 92 40.2


User provided reference genes

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