Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 3.4e-48 194.5 89 100.0
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 2.4e-33 145.2 79 83.5
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 1.0e-31 139.8 79 78.5
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 5.0e-31 137.5 79 77.2
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 3.2e-30 134.8 80 77.5
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 4.2e-30 134.4 79 75.9
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 4.2e-30 134.4 83 75.9
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 1.2e-29 132.9 78 74.4
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 2.7e-29 131.7 79 73.4
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 2.7e-29 131.7 79 73.4
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 6.1e-29 130.6 80 71.2
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 8.0e-29 130.2 79 72.2
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 8.0e-29 130.2 79 73.4
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 8.0e-29 130.2 78 74.4
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.8e-28 129.0 79 72.2
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 1.8e-28 129.0 78 70.5
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 3.0e-28 128.3 82 73.2
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 4.0e-28 127.9 79 73.4
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 1.2e-27 126.3 80 75.0
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.5e-27 125.9 78 74.4
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.0e-27 125.6 80 72.5
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 2.6e-27 125.2 82 69.5
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 3.3e-27 124.8 78 71.8
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 3.3e-27 124.8 81 70.4
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 3.3e-27 124.8 92 65.2
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 4.4e-27 124.4 81 69.1
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 5.7e-27 124.0 81 69.1
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 7.5e-27 123.6 81 67.9
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 1.3e-26 122.9 80 68.8
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.7e-26 122.5 81 67.9
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.7e-26 122.5 81 67.9
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.7e-26 122.5 81 67.9
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 1.7e-26 122.5 79 67.1
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 1.7e-26 122.5 79 69.6
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.2e-26 122.1 78 70.5
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.2e-26 122.1 78 70.5
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.2e-26 122.1 78 70.5
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 2.2e-26 122.1 79 67.1
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 2.2e-26 122.1 79 69.6
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 2.8e-26 121.7 79 72.2
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 4.8e-26 120.9 79 67.1
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 4.8e-26 120.9 84 67.9
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 6.3e-26 120.6 79 68.4
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 8.3e-26 120.2 79 73.4
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 1.1e-25 119.8 81 65.4
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 1.1e-25 119.8 77 70.1
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.4e-25 119.4 79 67.1
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 1.8e-25 119.0 82 67.1
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 1.8e-25 119.0 79 69.6
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.4e-25 118.6 76 68.4
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 2.4e-25 118.6 79 72.2
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 4.1e-25 117.9 79 68.4
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 4.1e-25 117.9 79 68.4
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 4.1e-25 117.9 80 70.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 5.3e-25 117.5 82 67.1
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 7.0e-25 117.1 79 67.1
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 9.1e-25 116.7 79 67.1
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 1.2e-24 116.3 76 69.7
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 1.2e-24 116.3 79 67.1
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.0e-24 115.5 78 66.7
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 2.0e-24 115.5 76 64.5
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 2.7e-24 115.2 74 67.6
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 5.9e-24 114.0 79 67.1
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 7.7e-24 113.6 79 65.8
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 7.7e-24 113.6 104 55.8
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.0e-23 113.2 77 64.9
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 1.0e-23 113.2 81 66.7
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 1.0e-23 113.2 81 66.7
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 1.3e-23 112.8 79 67.1
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 1.3e-23 112.8 79 67.1
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-23 112.8 79 67.1
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 1.3e-23 112.8 79 67.1
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 1.3e-23 112.8 77 63.6
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.7e-23 112.5 74 67.6
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 1.7e-23 112.5 78 65.4
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 2.2e-23 112.1 80 66.2
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 2.2e-23 112.1 81 67.9
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 2.2e-23 112.1 81 63.0
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 3.8e-23 111.3 74 70.3
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 5.0e-23 110.9 81 64.2
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 5.0e-23 110.9 81 64.2
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 5.0e-23 110.9 79 67.1
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 6.5e-23 110.5 75 64.0
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 1.1e-22 109.8 79 62.0
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.9e-22 109.0 74 67.6
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 1.9e-22 109.0 79 64.6
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 2.5e-22 108.6 81 64.2
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 2.5e-22 108.6 79 63.3
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 2.5e-22 108.6 79 64.6
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 3.2e-22 108.2 81 64.2
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 7.2e-22 107.1 81 63.0
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 9.4e-22 106.7 81 59.3
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 1.2e-21 106.3 81 60.5
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 1.2e-21 106.3 85 62.4
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 2.1e-21 105.5 77 64.9
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.0e-20 103.2 81 61.7
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 1.8e-20 102.4 79 59.5
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 3.0e-20 101.7 77 61.0
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 5.2e-20 100.9 77 62.3
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.2e-19 99.8 79 59.5
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 1.5e-19 99.4 83 57.8
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 1.5e-19 99.4 78 62.8
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 1.5e-19 99.4 74 63.5
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 7.5e-19 97.1 70 60.0
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 2.2e-18 95.5 77 55.8
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 2.8e-18 95.1 71 57.7
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 4.8e-18 94.4 83 57.8
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 8.3e-18 93.6 76 57.9
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.8e-17 92.4 77 55.8
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 1.8e-17 92.4 77 55.8
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 9.1e-17 90.1 74 56.8
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 9.1e-17 90.1 99 45.5
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 7.7e-16 87.0 54 74.1
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 1.5e-14 82.8 70 55.7
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 5.5e-14 80.9 79 49.4
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 1.2e-13 79.7 69 56.5
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 6.1e-13 77.4 54 64.8
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 3.0e-12 75.1 77 48.1
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 1.2e-11 73.2 74 48.6
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 4.4e-11 71.2 54 61.1
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 2.2e-10 68.9 54 57.4
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 9.2e-09 63.5 72 44.4
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 1.6e-08 62.8 51 58.8
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 6.6e-07 57.4 54 53.7
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 8.6e-07 57.0 57 49.1
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 2.5e-06 55.5 57 49.1
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 7.3e-06 53.9 54 48.1


User provided reference genes

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