Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 1.1e-121 439.9 215 100.0
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.0e-118 429.1 215 98.1
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 4.2e-92 341.7 214 76.2
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 2.8e-88 328.9 217 73.7
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 3.5e-86 322.0 217 72.4
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 4.2e-84 315.1 217 70.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 6.1e-83 311.2 199 77.4
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 1.4e-82 310.1 217 67.7
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 1.5e-81 306.6 217 68.2
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 5.3e-79 298.1 214 68.7
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 1.6e-78 296.6 193 72.5
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 1.6e-78 296.6 217 67.7
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 1.5e-76 290.0 217 66.4
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 1.5e-76 290.0 194 71.1
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 1.5e-76 290.0 204 72.1
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 3.2e-76 288.9 219 67.1
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 4.2e-76 288.5 217 64.5
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 4.2e-76 288.5 217 64.5
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 7.2e-76 287.7 219 65.3
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 1.2e-75 287.0 217 64.5
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.7e-75 285.8 217 65.0
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 1.4e-74 283.5 217 64.1
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 1.4e-74 283.5 222 66.2
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 3.0e-74 282.3 217 63.1
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 6.8e-74 281.2 217 64.1
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 2.6e-73 279.3 210 62.9
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 3.4e-73 278.9 217 63.6
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.4e-73 278.5 217 63.1
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 5.7e-73 278.1 217 63.1
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 7.5e-73 277.7 215 64.2
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.3e-72 276.9 215 64.2
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.3e-72 276.9 217 64.5
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 1.3e-72 276.9 218 65.1
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.7e-72 276.6 219 61.2
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.2e-72 276.2 220 63.6
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 2.8e-72 275.8 214 63.6
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 2.8e-72 275.8 214 63.6
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.8e-72 275.8 217 60.8
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 3.7e-72 275.4 215 63.7
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 4.8e-72 275.0 217 63.6
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 8.3e-72 274.2 174 74.7
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 2.4e-71 272.7 219 64.8
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 2.4e-71 272.7 217 62.2
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.4e-71 272.7 214 63.6
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 3.1e-71 272.3 217 62.7
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 3.1e-71 272.3 193 68.9
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 4.1e-71 271.9 216 63.4
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 5.4e-71 271.6 213 63.8
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 9.1e-71 270.8 216 62.5
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 1.6e-70 270.0 217 60.4
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.6e-70 270.0 214 60.7
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 3.5e-70 268.9 214 60.7
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 5.9e-70 268.1 214 62.6
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 7.7e-70 267.7 218 62.8
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 2.9e-69 265.8 217 61.3
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 5.0e-69 265.0 190 67.4
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 8.5e-69 264.2 177 70.6
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 8.5e-69 264.2 221 60.2
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 1.9e-68 263.1 217 60.8
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 2.5e-68 262.7 217 59.4
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 3.2e-68 262.3 194 66.5
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 5.5e-68 261.5 218 58.7
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 5.5e-68 261.5 224 59.4
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 3.0e-66 255.8 214 60.3
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 4.0e-66 255.4 191 65.4
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 8.8e-66 254.2 215 59.1
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.7e-64 250.0 216 56.9
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 3.7e-64 248.8 158 73.4
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 3.5e-62 242.3 216 56.0
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.0e-61 240.7 215 56.7
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.3e-61 240.4 215 56.7
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 2.3e-61 239.6 217 59.0
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 5.0e-61 238.4 215 56.7
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 6.6e-61 238.0 212 55.2
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 3.3e-60 235.7 219 57.1
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 5.6e-60 235.0 215 57.2
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 7.3e-60 234.6 215 57.2
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 7.3e-60 234.6 215 57.2
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 7.3e-60 234.6 221 57.0
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 1.2e-59 233.8 215 56.3
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.6e-59 233.4 218 57.3
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 2.1e-59 233.0 214 54.7
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 1.8e-58 229.9 218 56.4
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 8.9e-58 227.6 214 55.6
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.7e-56 223.4 171 64.9
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 4.9e-56 221.9 171 61.4
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 3.2e-55 219.2 219 53.9
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 1.6e-54 216.9 215 51.2
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.6e-54 216.9 219 51.1
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 3.9e-53 212.2 153 64.1
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 1.7e-48 196.8 159 59.7
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 3.0e-45 186.0 162 58.0
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 3.9e-45 185.7 158 52.5
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 7.5e-41 171.4 134 54.5
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 3.2e-39 166.0 143 49.7
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 7.1e-39 164.9 149 50.3
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.5e-36 157.1 144 57.6
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 3.3e-36 156.0 230 41.7
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.6e-35 153.7 148 48.0
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 2.0e-33 146.7 139 48.2
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 4.1e-31 139.0 138 52.2
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.5e-28 129.8 82 73.2
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 4.3e-28 129.0 145 42.1
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 5.6e-20 102.1 52 78.8
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 7.6e-17 91.7 148 36.5
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 4.2e-15 85.9 54 75.9
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 5.6e-12 75.5 44 75.0


User provided reference genes

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