Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.5e-118 429.5 215 100.0
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 6.1e-83 311.2 378 51.1
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.5e-81 306.6 192 82.3
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 2.7e-78 295.8 191 80.1
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 4.5e-78 295.0 377 48.0
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 1.0e-77 293.9 378 48.1
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 6.5e-77 291.2 378 48.4
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 8.5e-77 290.8 378 47.1
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 1.1e-76 290.4 373 46.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.5e-76 289.3 388 47.9
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.5e-76 289.3 378 48.1
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 3.2e-76 288.9 374 47.1
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 4.2e-76 288.5 378 48.4
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 4.2e-76 288.5 378 47.4
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 4.2e-76 288.5 378 48.1
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 7.2e-76 287.7 192 76.0
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 9.4e-76 287.3 378 46.8
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 9.4e-76 287.3 362 47.8
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 1.2e-75 287.0 378 47.9
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.6e-75 286.6 378 47.4
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 1.6e-75 286.6 378 47.1
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 2.1e-75 286.2 376 46.8
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 4.7e-75 285.0 378 45.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 6.1e-75 284.6 378 46.3
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 6.1e-75 284.6 378 47.1
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.0e-74 283.9 378 47.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.4e-74 283.5 192 76.6
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.4e-74 283.5 192 74.5
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.8e-74 283.1 377 46.4
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.8e-74 283.1 193 73.6
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 2.3e-74 282.7 379 46.4
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-74 282.7 379 46.7
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.3e-74 282.7 193 72.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 3.0e-74 282.3 378 45.2
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 3.0e-74 282.3 378 45.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.0e-74 282.3 378 46.6
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.0e-74 282.3 378 46.6
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.0e-74 282.3 378 46.6
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 4.0e-74 282.0 378 46.6
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.0e-74 282.0 377 46.2
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 5.2e-74 281.6 371 46.1
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 5.2e-74 281.6 378 46.0
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 8.8e-74 280.8 193 72.5
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 1.5e-73 280.0 378 45.8
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 2.0e-73 279.6 329 51.4
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.0e-73 279.6 393 45.8
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 2.6e-73 279.3 193 72.0
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.4e-73 278.9 378 46.0
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 3.4e-73 278.9 378 46.0
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 3.4e-73 278.9 378 45.8
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.4e-73 278.5 378 46.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 5.7e-73 278.1 192 71.4
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 7.5e-73 277.7 349 47.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 7.5e-73 277.7 378 45.8
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 7.5e-73 277.7 378 45.8
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.3e-72 276.9 422 42.9
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.3e-72 276.9 371 45.6
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 1.7e-72 276.6 193 71.5
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.2e-72 276.2 378 45.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 2.2e-72 276.2 381 44.4
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 2.8e-72 275.8 378 45.2
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 2.8e-72 275.8 378 45.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 2.8e-72 275.8 368 46.2
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 2.8e-72 275.8 380 44.7
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 2.8e-72 275.8 190 73.2
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 3.7e-72 275.4 330 49.7
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 3.7e-72 275.4 370 45.7
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 4.8e-72 275.0 377 46.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 6.3e-72 274.6 192 71.9
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.1e-71 273.9 190 72.1
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 1.4e-71 273.5 193 72.0
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.8e-71 273.1 377 45.9
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-71 272.7 378 45.2
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 9.1e-71 270.8 371 44.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.6e-70 270.0 374 45.2
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 2.0e-70 269.6 379 44.9
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.0e-70 269.6 378 43.9
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 3.5e-70 268.9 374 44.9
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.3e-69 266.9 364 45.3
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 1.7e-69 266.5 190 70.0
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.2e-69 266.2 369 45.0
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 2.9e-69 265.8 374 44.4
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-69 265.8 374 44.4
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 3.8e-69 265.4 192 69.8
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 8.5e-69 264.2 193 67.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 3.2e-68 262.3 379 44.1
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 2.1e-67 259.6 190 68.4
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 3.0e-66 255.8 190 66.8
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.2e-65 253.8 379 41.2
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.4e-65 252.3 193 63.7
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 4.4e-65 251.9 377 43.8
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 8.3e-64 247.7 193 64.8
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.8e-63 246.5 354 44.1
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 4.5e-62 241.9 353 43.9
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.0e-61 240.7 354 44.1
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 3.0e-58 229.2 371 41.0
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 5.7e-57 224.9 378 41.8
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 7.5e-57 224.6 358 43.9
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 5.4e-55 218.4 168 65.5
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.4e-50 203.8 153 66.0
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 1.2e-49 200.7 165 62.4
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 2.6e-49 199.5 361 38.0
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 6.6e-45 184.9 188 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.2e-43 180.6 188 47.9
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.2e-42 175.3 272 44.1
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 7.5e-41 171.4 174 55.2
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 1.2e-38 164.1 161 54.0
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 1.0e-37 161.0 267 41.6
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 2.2e-32 143.3 110 68.2
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 1.1e-31 141.0 120 61.7
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.5e-30 136.0 178 48.3
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 6.0e-30 135.2 71 83.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.9e-29 132.5 92 69.6
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.9e-28 130.2 205 36.6
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 6.9e-26 121.7 164 46.3
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 2.6e-25 119.8 97 63.9
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 5.6e-20 102.1 217 30.9
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 1.6e-19 100.5 334 28.4
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 9.0e-18 94.7 62 74.2
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 2.6e-17 93.2 50 80.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 5.8e-17 92.0 80 65.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.7e-16 90.5 67 71.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 2.2e-16 90.1 58 74.1
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 1.4e-15 87.4 184 31.5
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 7.1e-15 85.1 188 28.7
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.1e-14 83.6 48 68.8
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 6.7e-13 78.6 56 75.0
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.1e-11 73.6 40 87.5
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 6.2e-11 72.0 223 31.4
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.4e-10 70.9 84 53.6
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 2.4e-10 70.1 40 85.0
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.0e-10 69.3 58 62.1
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 5.3e-10 68.9 41 73.2
SalBow5G1052 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.4e-07 60.8 70 50.0
SalBow6G4382 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.4e-07 60.8 70 50.0
SalBow8G1246 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.4e-07 60.8 70 50.0


User provided reference genes

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