Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.9e-248 860.9 406 100.0
Rhsim07G0232100 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.4e-152 542.7 397 69.8
RhsimUnG0034600 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.1e-149 531.2 352 74.7
RhsimUnG0034700 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.1e-149 531.2 352 74.7
RhsimUnG0034800 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.1e-149 531.2 352 74.7
RhsimUnG0034900 Rhododendron simsii HOM05D010628 ORTHO05D010877 1.7e-147 526.6 352 74.1
RhsimUnG0034500 Rhododendron simsii HOM05D010628 ORTHO05D010877 5.1e-147 525.0 352 73.9
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 8.7e-147 524.2 356 73.3
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 8.1e-145 517.7 360 72.2
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.2e-117 425.6 344 65.1
RhsimUnG0034400 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.8e-110 402.5 352 60.5
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.1e-43 180.3 364 35.2
Rhsim09G0205400 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.6e-34 150.6 173 49.7
RhsimUnG0033700 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.9e-30 136.7 303 35.0
Rhsim05G0082300 Rhododendron simsii HOM05D000130 ORTHO05D000257 3.3e-21 107.1 116 55.2
Rhsim03G0011900 Rhododendron simsii HOM05D018081 ORTHO05D010877 5.6e-21 106.3 330 29.1
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 2.6e-18 97.4 364 26.1
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 3.8e-17 93.6 200 33.0
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 1.6e-15 88.2 280 28.6
Thhalv10012107m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.1e-15 87.8 278 29.5
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 2.1e-15 87.8 314 30.6
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.1e-15 87.8 314 25.5
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 2.7e-15 87.4 297 27.3
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 4.6e-15 86.7 212 30.2
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 6.0e-15 86.3 250 28.4
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 7.9e-15 85.9 278 32.4
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 1.8e-14 84.7 312 26.9
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.3e-14 84.3 270 28.1
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 3.0e-14 84.0 326 30.1
QL11p042465 Quercus lobata HOM05D025344 ORTHO05D009743 3.0e-14 84.0 355 26.5
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 1.1e-13 82.0 264 28.4
Rhsim12G0158900 Rhododendron simsii HOM05D000374 ORTHO05D000238 1.5e-13 81.6 297 27.6
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.9e-13 81.3 220 29.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.3e-13 80.1 295 24.4
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 7.4e-13 79.3 322 27.3
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 7.4e-13 79.3 322 27.3
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 1.3e-12 78.6 195 28.2
AT4G33900 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.8e-12 77.4 205 28.3
QL11p042411 Quercus lobata HOM05D025344 ORTHO05D009743 2.8e-12 77.4 348 27.6
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 4.8e-12 76.6 205 30.7
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 4.8e-12 76.6 315 25.1
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 6.2e-12 76.3 251 28.7
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 1.8e-11 74.7 320 26.9
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 2.4e-11 74.3 204 28.4
Rhsim10G0137100 Rhododendron simsii HOM05D000374 ORTHO05D013046 5.3e-11 73.2 255 29.0
AT4G23580 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.9e-11 72.8 166 30.7
CSS0001088 Camellia sinensis var. sinensis HOM05D012885 ORTHO05D010877 6.9e-11 72.8 215 28.4
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 6.9e-11 72.8 127 38.6
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.2e-10 72.0 139 34.5
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 1.2e-10 72.0 207 30.0
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 1.5e-10 71.6 314 22.9
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 1.5e-10 71.6 239 25.1
Ciclev10025908m.g Citrus clementina HOM05D000249 ORTHO05D000206 3.4e-10 70.5 216 29.6
Thhalv10005635m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.4e-10 70.5 215 28.8
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.5e-10 70.1 175 30.3
Rhsim12G0051600 Rhododendron simsii HOM05D010628 ORTHO05D016249 5.8e-10 69.7 341 22.9
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 7.6e-10 69.3 320 25.9
Rhsim06G0067900 Rhododendron simsii HOM05D018081 ORTHO05D026100 7.6e-10 69.3 324 25.0
Carub.0007s0145 Capsella rubella HOM05D000249 ORTHO05D000206 1.0e-09 68.9 337 26.7
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.0e-09 68.9 207 29.0
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 1.0e-09 68.9 211 29.4
AL6G47530 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-09 68.6 250 24.8
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 1.3e-09 68.6 303 22.8
QL11p003079 Quercus lobata HOM05D010066 ORTHO05D010877 1.3e-09 68.6 238 27.3
QL11p045102 Quercus lobata HOM05D010066 ORTHO05D009743 1.3e-09 68.6 279 22.9
BcaNung05811 Brassica carinata HOM05D000249 ORTHO05D000206 1.7e-09 68.2 181 30.9
BolC1t00060H Brassica oleracea HOM05D000249 ORTHO05D000206 1.7e-09 68.2 181 30.9
Carub.0007s1979 Capsella rubella HOM05D000249 ORTHO05D000206 1.7e-09 68.2 167 30.5
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 1.7e-09 68.2 242 26.9
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 1.7e-09 68.2 235 26.8
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 1.7e-09 68.2 235 26.8
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 2.2e-09 67.8 117 34.2
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.2e-09 67.8 150 34.0
AT4G19870 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.2e-09 67.8 161 31.7
COL.COLO4_31615 Corchorus olitorius HOM05D052704 ORTHO05D044704 2.2e-09 67.8 136 28.7
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 2.9e-09 67.4 241 27.8
Cfa015317 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.9e-09 67.4 195 32.8
Thhalv10005584m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.9e-09 67.4 168 29.2
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 3.8e-09 67.0 241 27.8
Cc07_g16240 Coffea canephora HOM05D000249 ORTHO05D000206 3.8e-09 67.0 208 28.4
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 3.8e-09 67.0 242 26.9
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 3.8e-09 67.0 207 28.5
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 3.8e-09 67.0 262 26.3
CARHR175770 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.9e-09 66.6 178 30.3
Sp7g29610 Schrenkiella parvula HOM05D000249 ORTHO05D000206 4.9e-09 66.6 164 30.5
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 4.9e-09 66.6 221 25.8
Aqoxy2G00744 Aquilegia oxysepala HOM05D002402 ORTHO05D002633 6.5e-09 66.2 209 26.3
Carub.0007s0183 Capsella rubella HOM05D000249 ORTHO05D000206 6.5e-09 66.2 147 31.3
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 6.5e-09 66.2 211 28.4
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 6.5e-09 66.2 211 28.4
Lj3P635T20 Lonicera japonica HOM05D053282 ORTHO05D010877 8.4e-09 65.9 258 24.8
QL11p051711 Quercus lobata HOM05D010066 ORTHO05D009743 8.4e-09 65.9 264 24.6
AT4G39290 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.1e-08 65.5 166 31.9
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 1.1e-08 65.5 226 27.9
AL7G11720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.9e-08 64.7 226 25.7
C01p00590 Brassica napus HOM05D000249 ORTHO05D000206 1.9e-08 64.7 152 30.3
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 2.5e-08 64.3 224 27.2
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 2.5e-08 64.3 211 28.0
QL11p055815 Quercus lobata HOM05D025344 ORTHO05D021181 2.5e-08 64.3 131 32.8
Sp7g31430 Schrenkiella parvula HOM05D000249 ORTHO05D000206 2.5e-08 64.3 157 33.1
QL11p003115 Quercus lobata HOM05D010066 ORTHO05D009743 3.2e-08 63.9 214 25.7
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 3.2e-08 63.9 238 24.4
AT4G39580 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.2e-08 63.5 307 25.1
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 4.2e-08 63.5 267 25.5
AT4G34170 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.5e-08 63.2 100 37.0
BcaC01g00639 Brassica carinata HOM05D000249 ORTHO05D000206 5.5e-08 63.2 219 26.5
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 5.5e-08 63.2 180 30.0
Sp4g01030 Schrenkiella parvula HOM05D000249 ORTHO05D000206 5.5e-08 63.2 202 25.7
AT4G39590 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 7.1e-08 62.8 198 26.3
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 7.1e-08 62.8 102 38.2
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 7.1e-08 62.8 102 38.2
C03p37710 Brassica napus HOM05D000249 ORTHO05D000206 7.1e-08 62.8 141 30.5
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 7.1e-08 62.8 102 38.2
BolC3t16060H Brassica oleracea HOM05D000249 ORTHO05D000206 7.1e-08 62.8 141 30.5
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 9.3e-08 62.4 125 37.6
Sp7g36330 Schrenkiella parvula HOM05D000249 ORTHO05D000206 9.3e-08 62.4 179 27.9
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 1.2e-07 62.0 220 28.6
BraA01t00052Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-07 61.6 138 34.1
Carub.0008s0622 Capsella rubella HOM05D000249 ORTHO05D000206 1.6e-07 61.6 124 34.7
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 1.6e-07 61.6 119 35.3
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 1.6e-07 61.6 119 35.3
AT4G39550 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.1e-07 61.2 203 25.6
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-07 61.2 143 30.1
C07p01540 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-07 61.2 166 27.1
BraA06t24494Z Brassica rapa HOM05D000249 ORTHO05D000206 2.1e-07 61.2 96 34.4
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 2.1e-07 61.2 143 30.1
BcaC01g06741 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-07 60.8 141 29.8
BcaC01g06742 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-07 60.8 141 29.8
BcaC01g06743 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-07 60.8 141 29.8
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 3.5e-07 60.5 126 34.9
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.6e-07 60.1 163 30.7
Carub.0007s3641 Capsella rubella HOM05D000249 ORTHO05D000206 4.6e-07 60.1 185 27.6
CDE05G1217 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 4.6e-07 60.1 221 23.5
CDE05G2401 Ceratophyllum demersum HOM05D000249 ORTHO05D000206 4.6e-07 60.1 221 22.6
Haze_19846 Corylus avellana HOM05D027064 ORTHO05D009743 4.6e-07 60.1 191 26.7
Gorai.010G041700 Gossypium raimondii HOM05D009781 ORTHO05D011819 4.6e-07 60.1 244 26.6
QL09p047090 Quercus lobata HOM05D041046 ORTHO05D021181 4.6e-07 60.1 108 36.1
A01p06470 Brassica napus HOM05D000249 ORTHO05D000206 6.0e-07 59.7 106 34.9
BraA08t34999Z Brassica rapa HOM05D000249 ORTHO05D000206 6.0e-07 59.7 156 30.8
A06p13420 Brassica napus HOM05D000249 ORTHO05D000206 7.9e-07 59.3 96 33.3
A06p43040 Brassica napus HOM05D000249 ORTHO05D000206 7.9e-07 59.3 96 33.3
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 7.9e-07 59.3 160 29.4
Sp7g36900 Schrenkiella parvula HOM05D000249 ORTHO05D000206 7.9e-07 59.3 259 23.9
AL7G11590 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.0e-06 58.9 155 31.0
BraA01t00608Z Brassica rapa HOM05D000249 ORTHO05D000206 1.0e-06 58.9 98 34.7
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-06 58.5 144 33.3
BcaNung05814 Brassica carinata HOM05D000249 ORTHO05D000206 1.3e-06 58.5 152 28.9
Cfa007293 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.3e-06 58.5 224 23.7
Thhalv10006011m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.3e-06 58.5 115 33.0
BcaNung05813 Brassica carinata HOM05D000249 ORTHO05D000206 1.8e-06 58.2 101 36.6
A01p00450 Brassica napus HOM05D000249 ORTHO05D000206 1.8e-06 58.2 114 33.3
Carub.0002s2327 Capsella rubella HOM05D000249 ORTHO05D000206 1.8e-06 58.2 151 32.5
CARHR285960 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.8e-06 58.2 132 33.3
DCAR_011455 Daucus carota HOM05D000249 ORTHO05D000206 1.8e-06 58.2 217 26.7
A01p00440 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-06 57.8 101 34.7
A08p30690 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-06 57.8 159 30.2
BraA01t00051Z Brassica rapa HOM05D000249 ORTHO05D000206 2.3e-06 57.8 101 34.7
Carub.0007s0257 Capsella rubella HOM05D000249 ORTHO05D000206 2.3e-06 57.8 98 32.7
Carub.0008s0881 Capsella rubella HOM05D000249 ORTHO05D000206 2.3e-06 57.8 105 38.1
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.3e-06 57.8 161 29.2
Atru.chr12.1168 Acer truncatum HOM05D000249 ORTHO05D000206 3.0e-06 57.4 105 33.3
AL7G12790 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.0e-06 57.4 122 32.8
A06p48420 Brassica napus HOM05D000249 ORTHO05D000206 3.9e-06 57.0 157 28.0
BraA06t27710Z Brassica rapa HOM05D000249 ORTHO05D000206 3.9e-06 57.0 157 28.0
BraA08t33441Z Brassica rapa HOM05D000249 ORTHO05D000206 3.9e-06 57.0 120 35.0
Cfa007631 Carpinus fangiana HOM05D008391 ORTHO05D009743 3.9e-06 57.0 142 30.3
COL.COLO4_16992 Corchorus olitorius HOM05D017991 ORTHO05D020493 3.9e-06 57.0 144 32.6
AL4G22950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.1e-06 56.6 128 32.8
AT2G29830 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.1e-06 56.6 111 33.3
Prupe.6G172900 Prunus persica HOM05D000249 ORTHO05D000206 5.1e-06 56.6 227 25.1
CARHR246950 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.7e-06 55.8 100 33.0
Gohir.A06G037300 Gossypium hirsutum HOM05D009781 ORTHO05D011819 8.7e-06 55.8 166 28.9
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 8.7e-06 55.8 126 34.1


User provided reference genes

Program Settings