Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.0e-120 434.1 206 100.0
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.3e-77 293.5 147 97.3
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 4.5e-75 285.0 149 94.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 3.8e-74 282.0 149 92.6
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 6.5e-74 281.2 147 93.9
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 5.5e-73 278.1 148 91.9
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 7.2e-73 277.7 151 90.1
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 7.2e-73 277.7 149 90.6
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.2e-72 276.9 145 92.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 2.1e-72 276.2 140 95.0
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.1e-72 276.2 148 89.9
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 2.1e-72 276.2 148 91.2
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.7e-72 275.8 148 91.9
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.7e-72 275.8 148 90.5
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.7e-72 275.8 148 90.5
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 2.7e-72 275.8 147 90.5
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 3.6e-72 275.4 147 90.5
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 3.6e-72 275.4 148 90.5
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 4.6e-72 275.0 148 90.5
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 4.6e-72 275.0 148 90.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 4.6e-72 275.0 150 89.3
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 6.1e-72 274.6 148 90.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.0e-71 273.9 147 89.8
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.3e-71 273.5 148 90.5
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.3e-71 273.5 148 90.5
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 1.8e-71 273.1 146 91.1
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 1.8e-71 273.1 146 91.1
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.8e-71 273.1 147 89.1
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-71 273.1 147 89.1
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.8e-71 273.1 147 89.1
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.8e-71 273.1 147 89.1
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.0e-71 272.3 140 92.9
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 3.0e-71 272.3 140 92.9
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 3.0e-71 272.3 186 74.2
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 3.9e-71 271.9 147 89.1
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 3.9e-71 271.9 145 91.7
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.9e-71 271.9 140 92.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 5.1e-71 271.6 148 89.9
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 5.1e-71 271.6 146 90.4
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 6.7e-71 271.2 150 88.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.7e-71 271.2 147 89.1
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 6.7e-71 271.2 148 89.9
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 8.7e-71 270.8 148 89.9
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 8.7e-71 270.8 148 89.9
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 8.7e-71 270.8 146 90.4
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 8.7e-71 270.8 143 90.9
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 8.7e-71 270.8 143 90.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.1e-70 270.4 149 88.6
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 1.1e-70 270.4 147 88.4
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.1e-70 270.4 149 88.6
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.5e-70 270.0 148 89.9
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 1.5e-70 270.0 140 92.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.9e-70 269.6 150 87.3
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.9e-70 269.6 147 88.4
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.9e-70 269.6 148 88.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 1.9e-70 269.6 149 88.6
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 2.5e-70 269.2 147 87.8
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 2.5e-70 269.2 148 88.5
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 2.5e-70 269.2 148 88.5
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.5e-70 269.2 150 87.3
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.5e-70 269.2 149 87.9
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.3e-70 268.9 146 90.4
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 4.3e-70 268.5 148 89.2
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.3e-70 268.5 147 89.1
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 4.3e-70 268.5 147 89.1
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 5.7e-70 268.1 148 86.5
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 7.4e-70 267.7 140 92.1
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 7.4e-70 267.7 139 92.1
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 7.4e-70 267.7 148 88.5
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.4e-70 267.7 147 87.8
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.4e-70 267.7 139 92.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 9.7e-70 267.3 158 82.3
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 9.7e-70 267.3 149 87.2
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 9.7e-70 267.3 149 87.2
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-69 266.9 140 90.0
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.3e-69 266.9 140 90.0
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 1.6e-69 266.5 148 87.8
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 2.2e-69 266.2 148 88.5
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 2.2e-69 266.2 146 88.4
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 85.1
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 2.8e-69 265.8 148 86.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.7e-69 265.4 147 86.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 4.8e-69 265.0 140 90.0
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 4.8e-69 265.0 147 86.4
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.2e-69 264.2 148 88.5
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 8.2e-69 264.2 158 82.3
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.4e-68 263.5 140 90.0
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-68 263.1 148 88.5
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 1.8e-68 263.1 147 87.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.8e-68 263.1 167 80.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 2.4e-68 262.7 148 84.5
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 3.1e-68 262.3 148 87.8
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 5.3e-68 261.5 147 87.8
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 5.3e-68 261.5 147 87.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 1.5e-67 260.0 141 89.4
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 1.5e-67 260.0 141 89.4
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.5e-67 260.0 147 86.4
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 5.9e-67 258.1 147 87.1
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 5.9e-67 258.1 147 87.1
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 1.3e-66 256.9 148 84.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 2.2e-66 256.1 139 87.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 2.2e-66 256.1 148 85.8
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 8.5e-66 254.2 139 87.1
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 2.5e-65 252.7 139 86.3
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 2.5e-65 252.7 139 86.3
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 2.5e-65 252.7 139 86.3
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.2e-65 252.3 138 88.4
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 7.2e-65 251.1 139 84.9
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 9.4e-65 250.8 155 82.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 3.6e-64 248.8 131 91.6
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 3.6e-64 248.8 131 91.6
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 6.1e-64 248.1 141 86.5
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 7.9e-64 247.7 139 85.6
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 8.8e-63 244.2 135 88.9
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.1e-62 243.8 126 92.1
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.1e-62 243.8 131 90.1
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.6e-62 242.7 137 86.9
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 4.4e-62 241.9 125 92.0
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 5.7e-62 241.5 134 88.1
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 5.7e-62 241.5 133 88.0
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 5.7e-62 241.5 128 89.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 5.7e-62 241.5 126 92.1
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 7.4e-62 241.1 126 90.5
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 7.4e-62 241.1 128 89.8
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 9.7e-62 240.7 137 85.4
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 9.7e-62 240.7 135 86.7
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.3e-61 240.4 137 85.4
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 1.7e-61 240.0 148 79.1
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 4.8e-61 238.4 135 85.9
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 6.3e-61 238.0 145 83.4
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.4e-60 236.9 128 89.1
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-60 236.9 138 85.5
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-60 236.5 137 85.4
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.4e-60 236.1 134 87.3
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 4.1e-60 235.3 133 84.2
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 1.3e-58 230.3 145 78.6
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 8.5e-58 227.6 140 82.9
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 7.9e-56 221.1 152 74.3
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 2.3e-55 219.5 139 71.9
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 3.3e-54 215.7 138 71.0
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.8e-52 209.9 147 69.4
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 5.5e-49 198.4 181 58.6
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.7e-48 195.3 154 64.9
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 8.0e-48 194.5 127 73.2
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 3.7e-45 185.7 111 79.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.4e-44 183.0 98 90.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 2.0e-43 179.9 98 88.8
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.7e-43 179.5 115 72.2
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 1.3e-42 177.2 98 87.8
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 1.4e-39 167.2 88 88.6
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.4e-36 157.1 76 92.1
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 7.0e-36 154.8 110 75.5
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.6e-35 153.7 79 84.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.3e-34 150.6 144 59.0
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 3.6e-32 142.5 76 92.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.8e-28 130.2 68 95.6
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.1e-28 129.0 66 84.8
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.8e-26 122.5 72 84.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-25 120.6 72 84.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 7.3e-25 118.2 81 74.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 7.3e-25 118.2 72 83.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.2e-13 80.1 47 87.2
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 2.2e-13 80.1 39 97.4
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 5.4e-12 75.5 75 56.0
Actinidia31766 Actinidia chinensis HOM05D004227 ORTHO05D053762 2.6e-06 56.6 64 56.2


User provided reference genes

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