Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0155700 Rhododendron simsii HOM05D011823 ORTHO05D014382 7.4e-272 939.9 456 100.0
CSS0033824 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 1.9e-73 280.8 303 50.5
CSS0033539 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 2.4e-73 280.4 303 50.2
CSS0007058 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 1.9e-57 227.6 209 56.0
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 1.8e-31 141.4 273 37.4
CSS0022060 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 1.2e-27 128.6 106 58.5
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.1e-20 105.5 266 32.0
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.2e-19 102.1 260 32.3
TAR627G0443 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.2e-19 102.1 171 43.3
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.0e-19 101.3 331 27.8
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 4.5e-19 100.1 270 30.0
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.7e-18 98.2 251 30.7
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 8.5e-18 95.9 251 29.9
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 2.5e-17 94.4 251 31.1
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 4.2e-17 93.6 250 30.4
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 4.2e-17 93.6 267 30.7
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 7.2e-17 92.8 252 28.6
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 9.4e-17 92.4 252 29.4
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 9.4e-17 92.4 258 29.8
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 9.4e-17 92.4 267 30.7
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.2e-16 92.0 253 27.3
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 1.2e-16 92.0 263 30.4
COL.COLO4_36569 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.2e-16 92.0 264 26.9
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 2.1e-16 91.3 267 29.6
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 2.1e-16 91.3 267 29.2
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.1e-16 91.3 263 29.7
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 2.1e-16 91.3 266 30.5
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 2.1e-16 91.3 276 26.8
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 2.7e-16 90.9 250 29.2
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 3.6e-16 90.5 263 30.4
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 3.6e-16 90.5 251 29.9
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 4.7e-16 90.1 251 30.3
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 6.1e-16 89.7 255 28.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 6.1e-16 89.7 255 29.8
Atru.chr2.2937 Acer truncatum HOM05D002077 ORTHO05D000818 8.0e-16 89.4 270 28.5
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 8.0e-16 89.4 251 29.1
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 8.0e-16 89.4 254 29.9
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 8.0e-16 89.4 254 29.9
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 8.0e-16 89.4 254 29.9
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 8.0e-16 89.4 254 29.9
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 8.0e-16 89.4 254 27.6
Thecc.07G038400 Theobroma cacao HOM05D002077 ORTHO05D000818 8.0e-16 89.4 273 26.7
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 1.0e-15 89.0 251 29.5
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.4e-15 88.6 258 29.1
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 1.4e-15 88.6 251 29.1
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.8e-15 88.2 254 29.9
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 1.8e-15 88.2 254 29.5
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.8e-15 88.2 255 29.0
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 2.3e-15 87.8 249 28.5
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.3e-15 87.8 254 28.3
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 2.3e-15 87.8 254 28.0
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 3.0e-15 87.4 265 29.8
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 4.0e-15 87.0 251 28.7
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 4.0e-15 87.0 252 27.8
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 5.2e-15 86.7 250 28.4
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 5.2e-15 86.7 253 26.1
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 5.2e-15 86.7 251 29.9
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 6.8e-15 86.3 251 29.5
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 6.8e-15 86.3 251 28.3
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 6.8e-15 86.3 253 29.2
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 8.8e-15 85.9 260 26.2
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 8.8e-15 85.9 251 28.7
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 8.8e-15 85.9 254 28.3
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 1.2e-14 85.5 251 28.7
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.2e-14 85.5 254 28.0
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 1.2e-14 85.5 253 28.5
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.5e-14 85.1 258 30.2
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 2.0e-14 84.7 250 28.0
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.0e-14 84.7 252 29.0
Aqoxy7G02717 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.6e-14 84.3 134 36.6
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.6e-14 84.3 254 28.7
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.6e-14 84.3 254 28.7
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.6e-14 84.3 254 28.7
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 2.6e-14 84.3 251 27.9
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 2.6e-14 84.3 253 27.7
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 4.4e-14 83.6 254 28.7
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 4.4e-14 83.6 253 26.9
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 7.5e-14 82.8 254 27.6
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 7.5e-14 82.8 258 27.5
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 7.5e-14 82.8 254 27.6
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 9.8e-14 82.4 254 28.7
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.3e-13 82.0 248 25.4
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 1.3e-13 82.0 251 27.1
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 1.3e-13 82.0 254 28.3
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 1.3e-13 82.0 251 27.9
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.3e-13 82.0 253 26.1
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.7e-13 81.6 250 27.6
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.7e-13 81.6 251 28.3
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.7e-13 81.6 250 26.4
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 2.2e-13 81.3 278 26.6
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 2.2e-13 81.3 249 25.3
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.2e-13 81.3 250 26.8
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 2.2e-13 81.3 254 27.2
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 2.8e-13 80.9 254 28.7
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.8e-13 80.9 250 26.4
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 2.8e-13 80.9 250 26.4
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 3.7e-13 80.5 234 29.1
Haze_06779 Corylus avellana HOM05D002077 ORTHO05D000818 4.8e-13 80.1 303 25.4
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 4.8e-13 80.1 252 27.8
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 4.8e-13 80.1 251 26.7
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 6.3e-13 79.7 251 27.5
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 8.3e-13 79.3 253 27.7
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.1e-12 79.0 227 26.9
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.1e-12 79.0 255 27.1
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.1e-12 79.0 251 27.5
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.8e-12 78.2 250 25.6
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 2.4e-12 77.8 279 28.3
CSS0043009 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.4e-12 77.8 232 26.3
Aqoxy2G00214 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 5.4e-12 76.6 219 30.6
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 7.0e-12 76.3 259 27.4
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 9.1e-12 75.9 251 27.5
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 9.1e-12 75.9 166 29.5
Aqoxy4G02851 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.2e-11 75.5 255 27.8
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 1.2e-11 75.5 251 26.3
CSS0048802 Camellia sinensis var. sinensis HOM05D002273 ORTHO05D000818 2.7e-11 74.3 261 24.1
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 2.7e-11 74.3 248 23.8
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 4.5e-11 73.6 199 29.6
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 4.5e-11 73.6 255 26.7
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 5.9e-11 73.2 279 26.2
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 1.0e-10 72.4 238 29.0
Medtr1g029330 Medicago truncatula HOM05D002077 ORTHO05D000818 1.0e-10 72.4 248 25.0
RcHm_v2.0_Chr4g0414641 Rosa chinensis HOM05D002273 ORTHO05D000818 1.3e-10 72.0 277 25.3
CSS0000286 Camellia sinensis var. sinensis HOM05D002273 ORTHO05D000818 5.0e-10 70.1 266 24.1
CSS0050412 Camellia sinensis var. sinensis HOM05D002273 ORTHO05D000818 5.0e-10 70.1 267 24.7
Psat3g113640 Pisum sativum HOM05D002077 ORTHO05D000818 5.0e-10 70.1 240 25.0
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 6.6e-10 69.7 260 26.5
FAN12G1649 Fragaria x ananassa HOM05D002747 ORTHO05D003069 1.5e-09 68.6 268 25.0
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.5e-09 68.6 250 26.0
THA.LOC104814426 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 1.5e-09 68.6 247 25.1
DCAR_014540 Daucus carota HOM05D002273 ORTHO05D000818 2.5e-09 67.8 263 24.7
Dinv27227 Davidia involucrata HOM05D002273 ORTHO05D000818 2.5e-09 67.8 263 23.6
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.2e-09 67.0 276 26.8
FvH4_4g13771 Fragaria vesca HOM05D002273 ORTHO05D000818 5.5e-09 66.6 268 25.0
vmacro15545 Vaccinium macrocarpon HOM05D002273 ORTHO05D000818 5.5e-09 66.6 260 26.2
Dinv25029 Davidia involucrata HOM05D002273 ORTHO05D000818 9.5e-09 65.9 276 22.8
Psat3g113600 Pisum sativum HOM05D002077 ORTHO05D000818 1.2e-08 65.5 192 25.5
COL.COLO4_32276 Corchorus olitorius HOM05D037256 ORTHO05D000818 1.6e-08 65.1 158 30.4
A04p18450 Brassica napus HOM05D002077 ORTHO05D000818 2.1e-08 64.7 279 22.9
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.8e-08 64.3 130 29.2
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.8e-08 64.3 130 30.0
HPP92_013985 Vanilla planifolia HOM05D002273 ORTHO05D000818 3.6e-08 63.9 263 22.1
arahy.Tifrunner.gnm1.ann1.Z3M8QU Arachis hypogaea HOM05D002077 ORTHO05D000818 4.7e-08 63.5 243 25.1
CSS0027661 Camellia sinensis var. sinensis HOM05D002273 ORTHO05D000818 4.7e-08 63.5 263 24.3
Hma1.2p1_0383F.1_g140340 Hydrangea macrophylla HOM05D002273 ORTHO05D000818 4.7e-08 63.5 287 22.0
Medtr7g074410 Medicago truncatula HOM05D002077 ORTHO05D000818 4.7e-08 63.5 131 25.2
arahy.Tifrunner.gnm1.ann1.DJ3X7X Arachis hypogaea HOM05D002077 ORTHO05D000818 6.1e-08 63.2 140 25.0
GSVIVG01006146001 Vitis vinifera HOM05D002273 ORTHO05D000818 6.1e-08 63.2 266 22.9
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 1.0e-07 62.4 130 29.2
GSVIVG01022452001 Vitis vinifera HOM05D002273 ORTHO05D000818 1.0e-07 62.4 282 23.4
Actinidia27496 Actinidia chinensis HOM05D002273 ORTHO05D000818 1.4e-07 62.0 289 23.2
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 1.8e-07 61.6 267 24.0
Actinidia02878 Actinidia chinensis HOM05D002273 ORTHO05D000818 2.3e-07 61.2 286 22.0
Aqoxy6G01827 Aquilegia oxysepala HOM05D002273 ORTHO05D000818 2.3e-07 61.2 263 25.5
HPP92_019492 Vanilla planifolia HOM05D002273 ORTHO05D000818 2.3e-07 61.2 163 25.2
Aqoxy6G00702 Aquilegia oxysepala HOM05D010647 ORTHO05D012576 3.0e-07 60.8 262 22.1
Dinv21990 Davidia involucrata HOM05D002273 ORTHO05D000818 3.0e-07 60.8 319 22.3
Dinv30109 Davidia involucrata HOM05D002273 ORTHO05D000818 3.0e-07 60.8 319 22.3
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 3.0e-07 60.8 275 25.1
Prupe.1G158200 Prunus persica HOM05D002273 ORTHO05D000818 3.0e-07 60.8 265 24.9
Medtr7g075970 Medicago truncatula HOM05D002077 ORTHO05D000818 4.0e-07 60.5 125 29.6
arahy.Tifrunner.gnm1.ann1.BCS63D Arachis hypogaea HOM05D002077 ORTHO05D000818 5.2e-07 60.1 140 25.7
RcHm_v2.0_Chr4g0414631 Rosa chinensis HOM05D002273 ORTHO05D000818 5.2e-07 60.1 270 23.7
QL08p016914 Quercus lobata HOM05D002077 ORTHO05D000818 8.9e-07 59.3 107 30.8
QL08p017090 Quercus lobata HOM05D002077 ORTHO05D000818 8.9e-07 59.3 107 30.8
AT5G52480 Arabidopsis thaliana HOM05D000710 ORTHO05D000336 1.2e-06 58.9 138 30.4
arahy.Tifrunner.gnm1.ann1.R7U9VL Arachis hypogaea HOM05D002077 ORTHO05D000818 1.2e-06 58.9 130 27.7
COL.COLO4_34054 Corchorus olitorius HOM05D000710 ORTHO05D000336 1.5e-06 58.5 141 30.5
FAN08G0385 Fragaria x ananassa HOM05D000500 ORTHO05D000367 1.5e-06 58.5 142 28.9
arahy.Tifrunner.gnm1.ann1.BD57PC Arachis hypogaea HOM05D002077 ORTHO05D000818 2.6e-06 57.8 172 24.4
Migut.H01341 Erythranthe guttata HOM05D000710 ORTHO05D000336 3.4e-06 57.4 171 25.7
PGSC0003DMG400040510 Solanum tuberosum HOM05D000710 ORTHO05D000336 3.4e-06 57.4 258 22.9
DCAR_013124 Daucus carota HOM05D002273 ORTHO05D000818 4.4e-06 57.0 156 26.3
FvH4_5g01901 Fragaria vesca HOM05D002077 ORTHO05D000818 5.7e-06 56.6 127 26.0
Sopen08g002910 Solanum pennellii HOM05D000710 ORTHO05D000336 5.7e-06 56.6 152 29.6
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 7.5e-06 56.2 279 21.9
arahy.Tifrunner.gnm1.ann1.UUWI9C Arachis hypogaea HOM05D002077 ORTHO05D000818 9.8e-06 55.8 130 26.2
TPR.G14717 Trifolium pratense HOM05D002077 ORTHO05D000818 9.8e-06 55.8 161 24.2


User provided reference genes

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