Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 3.5e-180 634.8 311 100.0
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.1e-104 382.5 321 64.8
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 5.5e-93 345.1 321 59.5
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 2.7e-92 342.8 321 59.8
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 3.1e-88 329.3 314 57.6
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 1.6e-87 327.0 316 57.9
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.5e-87 325.9 312 56.1
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 2.9e-86 322.8 316 55.4
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 5.0e-86 322.0 315 55.9
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 8.5e-86 321.2 315 56.2
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 1.1e-85 320.9 314 55.7
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 9.4e-85 317.8 315 55.6
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 9.4e-85 317.8 318 54.1
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 1.2e-84 317.4 315 54.0
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 1.6e-84 317.0 315 55.2
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 6.1e-84 315.1 307 55.7
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 1.8e-83 313.5 315 56.2
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 6.8e-83 311.6 312 53.5
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 1.5e-82 310.5 315 53.3
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 3.4e-82 309.3 326 51.5
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 5.7e-82 308.5 316 53.8
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 7.5e-82 308.1 315 54.0
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 9.7e-82 307.8 312 53.2
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 1.3e-81 307.4 315 52.7
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.3e-81 307.4 315 53.0
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 2.2e-81 306.6 315 53.0
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 3.7e-81 305.8 312 51.9
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 3.7e-81 305.8 349 48.7
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 4.8e-81 305.4 315 54.0
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 1.1e-80 304.3 314 52.2
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 1.1e-80 304.3 314 52.2
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 2.4e-80 303.1 318 54.1
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 4.1e-80 302.4 315 51.4
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 9.1e-80 301.2 314 51.6
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 9.1e-80 301.2 314 51.9
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 1.2e-79 300.8 271 57.6
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 1.6e-79 300.4 279 56.3
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 2.7e-79 299.7 315 52.7
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 2.7e-79 299.7 312 52.6
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 2.7e-79 299.7 315 51.1
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 5.9e-79 298.5 314 51.0
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 5.9e-79 298.5 315 50.8
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 1.3e-78 297.4 311 51.4
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 5.0e-78 295.4 271 56.5
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 1.1e-77 294.3 311 52.1
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.9e-77 293.5 322 52.5
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 4.2e-77 292.4 308 53.2
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 4.2e-77 292.4 314 51.0
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 9.4e-77 291.2 318 51.9
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.2e-76 290.8 319 52.0
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 1.2e-76 290.8 308 51.3
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 1.2e-76 290.8 311 50.2
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 3.6e-76 289.3 320 50.0
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 3.6e-76 289.3 313 49.2
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 4.7e-76 288.9 270 56.3
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 6.1e-76 288.5 310 51.3
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 8.0e-76 288.1 310 50.3
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 1.0e-75 287.7 270 54.8
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.4e-75 287.3 312 50.3
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 2.3e-75 286.6 324 49.7
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 3.0e-75 286.2 271 55.7
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 8.8e-75 284.6 311 49.5
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 8.8e-75 284.6 269 55.0
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 1.5e-74 283.9 312 49.4
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.5e-74 283.9 315 49.5
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 1.5e-74 283.9 322 48.1
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 3.4e-74 282.7 314 49.0
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 3.4e-74 282.7 311 49.8
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 3.4e-74 282.7 270 53.7
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 5.7e-74 282.0 271 53.9
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 7.5e-74 281.6 311 49.5
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 7.5e-74 281.6 325 48.0
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 7.5e-74 281.6 271 53.9
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 9.8e-74 281.2 315 47.9
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 1.3e-73 280.8 313 49.5
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 1.3e-73 280.8 312 49.7
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 2.2e-73 280.0 270 54.1
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 6.3e-73 278.5 311 48.6
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 1.4e-72 277.3 311 49.2
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 2.4e-72 276.6 323 48.3
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 9.1e-72 274.6 270 53.3
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 1.2e-71 274.2 325 47.7
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 7.7e-71 271.6 315 47.0
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 2.9e-70 269.6 305 47.5
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 1.5e-69 267.3 311 46.9
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 3.3e-69 266.2 322 48.8
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 4.2e-69 265.8 271 52.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-69 265.4 258 53.5
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 2.1e-68 263.5 270 51.5
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 2.8e-68 263.1 273 50.5
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 8.0e-68 261.5 311 45.7
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.8e-67 260.4 271 50.9
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 3.0e-67 259.6 268 51.1
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 1.2e-66 257.7 312 44.9
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.4e-66 256.1 322 45.0
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 2.2e-65 253.4 276 47.1
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 4.1e-64 249.2 270 48.9
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.0e-63 246.9 270 48.9
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 1.3e-62 244.2 289 43.6
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.9e-62 243.0 270 47.4
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 4.3e-61 239.2 270 47.0
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 5.6e-61 238.8 312 45.2
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 1.2e-60 237.7 277 46.6
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 8.3e-57 224.9 219 53.4
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.0e-54 218.0 258 46.5
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 8.1e-52 208.4 185 60.0
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 5.2e-51 205.7 261 43.7
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 2.4e-48 196.8 266 43.2
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 4.6e-47 192.6 142 67.6
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 7.8e-47 191.8 199 51.3
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 3.0e-46 189.9 205 50.2
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 1.1e-45 188.0 169 55.0
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 4.7e-36 156.0 305 37.0
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 4.7e-36 156.0 262 34.7
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 4.7e-36 156.0 264 36.0
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 8.9e-35 151.8 196 43.9
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 4.9e-33 146.0 197 44.2
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.4e-32 143.7 143 53.1
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 5.3e-27 125.9 197 40.1
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 9.0e-27 125.2 110 55.5
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 9.0e-19 98.6 73 64.4
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 2.9e-17 93.6 97 54.6
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 4.9e-17 92.8 73 58.9
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 8.4e-17 92.0 71 60.6
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 4.2e-16 89.7 152 35.5
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 3.9e-14 83.2 65 60.0
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 2.1e-12 77.4 52 69.2
SMO347G0182 Selaginella moellendorffii HOM05D001262 ORTHO05D001114 8.1e-12 75.5 256 27.0
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 1.1e-11 75.1 39 79.5
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.2e-10 71.6 125 34.4
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 2.2e-09 67.4 261 24.5
SGA_v2.0_scaffold479G52283 Striga asiatica HOM05D010287 ORTHO05D011738 1.4e-08 64.7 32 93.8
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 5.5e-08 62.8 68 47.1
Cpa.g.sc263.22 Carica papaya HOM05D010287 ORTHO05D011738 7.1e-08 62.4 32 90.6
Gorai.001G161100 Gossypium raimondii HOM05D010287 ORTHO05D011738 7.1e-08 62.4 32 90.6
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 1.6e-07 61.2 134 29.9
Dinv36565 Davidia involucrata HOM05D001262 ORTHO05D001114 3.5e-07 60.1 255 21.6
ClCG02G005820 Citrullus lanatus HOM05D010287 ORTHO05D011738 1.0e-06 58.5 32 84.4
arahy.Tifrunner.gnm1.ann1.13FT9I Arachis hypogaea HOM05D010287 ORTHO05D011738 1.3e-06 58.2 32 81.2
arahy.Tifrunner.gnm1.ann1.IDYR2V Arachis hypogaea HOM05D010287 ORTHO05D011738 1.3e-06 58.2 32 81.2
arahy.Tifrunner.gnm1.ann1.P7EYSH Arachis hypogaea HOM05D010287 ORTHO05D011738 1.3e-06 58.2 32 81.2
Medtr0082s0270 Medicago truncatula HOM05D010287 ORTHO05D011738 1.3e-06 58.2 32 81.2
CDE02G2487 Ceratophyllum demersum HOM05D010287 ORTHO05D011738 3.9e-06 56.6 32 78.1
CsaV3_UNG209230 Cucumis sativus L. HOM05D010287 ORTHO05D011738 3.9e-06 56.6 32 81.2
Medtr8g059760 Medicago truncatula HOM05D001750 ORTHO05D011738 3.9e-06 56.6 32 78.1


User provided reference genes

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