Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 6.7e-81 304.7 251 100.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.4e-70 270.4 254 85.8
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.5e-53 213.8 251 65.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.6e-53 213.0 252 56.7
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 3.4e-53 212.6 254 56.7
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.0e-52 211.1 126 88.1
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 5.0e-52 208.8 252 58.3
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 8.5e-52 208.0 125 86.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.1e-51 207.6 126 86.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.1e-51 207.6 126 87.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.1e-51 207.6 124 87.1
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.4e-51 207.2 252 74.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 4.2e-51 205.7 126 85.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.5e-51 205.3 126 85.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.5e-51 205.3 126 85.7
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.2e-50 204.1 252 60.7
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-50 204.1 125 85.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.2e-50 204.1 126 82.5
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-50 203.8 126 82.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.6e-50 203.8 126 82.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.6e-50 203.8 126 82.5
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.6e-50 203.8 126 84.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 2.1e-50 203.4 126 85.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.6e-50 202.6 126 81.7
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 3.6e-50 202.6 252 56.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.7e-50 202.2 126 84.1
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 4.7e-50 202.2 252 52.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 7.9e-50 201.4 126 84.1
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 7.9e-50 201.4 126 84.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 7.9e-50 201.4 126 84.1
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.0e-49 201.1 265 57.4
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.4e-49 200.7 127 81.9
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.4e-49 200.7 253 61.7
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.4e-49 200.7 118 86.4
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.4e-49 200.7 126 81.7
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-49 200.7 252 53.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.3e-49 199.9 126 83.3
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.3e-49 199.9 126 83.3
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.3e-49 199.9 126 83.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 2.3e-49 199.9 125 80.8
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.3e-49 199.9 126 83.3
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.3e-49 199.9 252 61.9
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 3.0e-49 199.5 253 60.1
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.0e-49 199.5 252 61.9
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 3.0e-49 199.5 249 55.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.0e-49 199.5 125 83.2
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 3.0e-49 199.5 126 83.3
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.9e-49 199.1 252 61.9
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.9e-49 199.1 252 61.9
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 3.9e-49 199.1 126 82.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 5.1e-49 198.7 252 63.1
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 6.7e-49 198.4 252 54.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 8.8e-49 198.0 126 82.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.8e-49 198.0 126 82.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 8.8e-49 198.0 126 84.1
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-48 197.6 126 82.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.5e-48 197.2 126 83.3
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.6e-48 196.4 126 82.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.6e-48 196.4 126 80.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 3.3e-48 196.1 127 79.5
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 5.7e-48 195.3 127 80.3
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.7e-48 195.3 126 81.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.7e-48 195.3 253 62.5
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-47 194.1 126 82.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-47 194.1 126 82.5
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.3e-47 194.1 127 84.3
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.3e-47 194.1 125 81.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.7e-47 193.7 124 79.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.2e-47 193.4 126 82.5
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.2e-47 193.4 126 81.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.7e-47 192.6 126 80.2
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 3.7e-47 192.6 126 81.0
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.1e-46 191.0 253 56.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.4e-46 190.7 126 80.2
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.4e-46 189.9 252 59.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.1e-46 189.5 126 80.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 5.3e-46 188.7 261 50.2
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 7.0e-46 188.3 126 79.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.2e-45 187.6 252 57.1
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.6e-45 187.2 259 51.4
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.6e-45 187.2 259 51.4
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.0e-45 186.8 126 77.8
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.0e-45 186.8 126 77.0
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.6e-45 186.4 125 78.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.5e-45 186.0 126 77.8
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.9e-45 185.3 256 53.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.9e-45 185.3 255 52.5
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-44 184.5 126 75.4
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.3e-44 184.1 161 65.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.3e-44 184.1 126 76.2
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.3e-44 184.1 267 51.3
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.2e-44 183.3 105 88.6
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.2e-44 183.3 252 49.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.8e-44 182.6 126 75.4
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.8e-44 182.6 126 75.4
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 5.0e-44 182.2 126 74.6
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 6.5e-44 181.8 126 74.6
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 8.5e-44 181.4 126 74.6
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 8.5e-44 181.4 126 73.8
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 8.5e-44 181.4 106 88.7
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.5e-43 180.6 124 74.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.5e-43 180.6 124 74.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.9e-43 180.3 124 73.4
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.9e-43 180.3 105 88.6
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.9e-43 180.3 123 77.2
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.5e-43 179.9 126 75.4
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.2e-43 179.5 143 67.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 4.2e-43 179.1 124 73.4
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.5e-43 178.7 114 82.5
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.1e-42 175.3 119 77.3
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.0e-41 174.5 110 83.6
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.0e-41 172.9 133 72.9
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.3e-40 169.5 233 51.5
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 6.3e-39 165.2 111 79.3
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.1e-38 162.9 122 69.7
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 3.5e-37 159.5 124 66.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.9e-37 158.7 120 70.0
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 5.9e-37 158.7 120 70.0
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.3e-36 157.5 95 82.1
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 8.5e-36 154.8 124 65.3
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.2e-35 152.5 118 66.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.2e-35 151.8 112 67.9
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.2e-34 151.0 124 64.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.6e-34 150.6 109 75.2
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.6e-34 150.6 101 81.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.0e-33 146.4 109 69.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 8.8e-33 144.8 113 68.1
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 4.4e-32 142.5 109 69.7
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.7e-31 140.6 97 78.4
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 4.8e-31 139.0 219 55.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 7.0e-30 135.2 114 64.9
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.7e-29 133.3 82 87.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 4.5e-29 132.5 110 66.4
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 4.5e-29 132.5 110 66.4
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.2e-28 130.2 105 64.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.9e-28 129.8 209 62.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.9e-28 129.8 210 50.0
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-28 129.8 125 56.8
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 8.5e-28 128.3 84 79.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.5e-27 127.5 103 60.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 5.5e-27 125.6 123 56.9
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 2.7e-26 123.2 126 58.7
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.9e-23 112.5 84 66.7
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.3e-23 112.1 82 72.0
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-20 103.6 79 68.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.9e-20 103.2 82 68.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 4.4e-16 89.4 88 52.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.2e-14 83.2 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.7e-13 80.1 113 42.5
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.5e-13 79.7 50 84.0
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.0e-12 78.2 65 60.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 2.3e-12 77.0 51 80.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.1e-11 74.7 177 41.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.9e-11 73.9 120 39.2
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 4.0e-09 66.2 49 65.3
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 5.2e-09 65.9 94 45.7
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 5.2e-09 65.9 41 70.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.4e-08 62.8 37 75.7


User provided reference genes

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