Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0053400 Rhododendron simsii HOM05D006204 ORTHO05D007851 1.0e-282 976.1 495 100.0
CSS0007769 Camellia sinensis var. sinensis HOM05D006204 ORTHO05D007851 7.9e-211 737.3 494 77.1
Dinv10448 Davidia involucrata HOM05D006204 ORTHO05D007851 2.2e-200 702.6 495 73.3
vmacro02824 Vaccinium macrocarpon HOM05D006204 ORTHO05D007851 1.4e-199 699.9 492 75.8
Lj2C1115T10 Lonicera japonica HOM05D006204 ORTHO05D007851 4.0e-186 655.2 502 68.5
Cfa010629 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.8e-184 649.0 493 67.7
Hma1.2p1_0161F.1_g071490 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 7.2e-180 634.4 472 69.3
QL09p047023 Quercus lobata HOM05D006204 ORTHO05D007851 2.0e-177 626.3 500 65.2
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.8e-176 622.5 424 73.1
Manes.12G059400 Manihot esculenta HOM05D006204 ORTHO05D007851 9.2e-175 617.5 456 66.9
CiPaw.13G058500 Carya illinoinensis HOM05D006204 ORTHO05D007851 4.5e-174 615.1 491 64.8
Peaxi162Scf00672g00017 Petunia axillaris HOM05D006204 ORTHO05D007851 1.3e-173 613.6 482 65.1
Prupe.8G189100 Prunus persica HOM05D006204 ORTHO05D007851 1.1e-172 610.5 494 61.9
TWI36G0048 Tripterygium wilfordii HOM05D006204 ORTHO05D007851 5.6e-172 608.2 493 63.7
Sopen09g021740 Solanum pennellii HOM05D006204 ORTHO05D007851 7.3e-172 607.8 496 62.9
Cc01_g16040 Coffea canephora HOM05D006204 ORTHO05D007851 9.5e-172 607.4 419 69.7
Haze_03572 Corylus avellana HOM05D006204 ORTHO05D007851 8.0e-171 604.4 565 59.1
Solyc09g055910.3 Solanum lycopersicum HOM05D006204 ORTHO05D007851 1.4e-170 603.6 495 62.8
Lsat_1_v5_gn_8_97700 Lactuca sativa HOM05D006204 ORTHO05D007851 2.3e-170 602.8 489 62.6
Nitab4.5_0002518g0020 Nicotiana tabacum HOM05D006204 ORTHO05D007851 2.3e-170 602.8 483 62.9
MSTRG.18500 Avicennia marina HOM05D006204 ORTHO05D007851 2.0e-169 599.7 495 61.8
Oeu051516.1 Olea europaea HOM05D006204 ORTHO05D007851 3.4e-169 599.0 434 67.7
Cpa.g.sc8.59 Carica papaya HOM05D006204 ORTHO05D007851 1.3e-168 597.0 464 64.2
MD05G1157000 Malus domestica HOM05D006204 ORTHO05D007851 1.2e-166 590.5 495 61.0
Ciclev10015007m.g Citrus clementina HOM05D006204 ORTHO05D007851 4.6e-166 588.6 473 63.2
CAN.G120.6 Capsicum annuum HOM05D006204 ORTHO05D007851 1.3e-165 587.0 496 61.3
Duzib211G0163 Durio zibethinus HOM05D006204 ORTHO05D007851 2.3e-165 586.3 494 61.1
Potri.014G018300 Populus trichocarpa HOM05D006204 ORTHO05D007851 2.3e-165 586.3 483 62.3
ECA236G0779 Erigeron canadensis HOM05D006204 ORTHO05D007851 3.9e-165 585.5 487 62.2
SalBow6G6469 Salvia bowleyana HOM05D006204 ORTHO05D007851 8.6e-165 584.3 433 67.2
Sabra14G0135500 Salix brachista HOM05D006204 ORTHO05D007851 2.5e-164 582.8 421 68.6
BcaC06g30795 Brassica carinata HOM05D006204 ORTHO05D007851 3.3e-164 582.4 453 64.2
BraA06t26832Z Brassica rapa HOM05D006204 ORTHO05D007851 1.2e-163 580.5 453 64.5
Potri.014G177300 Populus trichocarpa HOM05D006204 ORTHO05D007851 1.6e-163 580.1 482 61.8
RcHm_v2.0_Chr6g0282641 Rosa chinensis HOM05D006204 ORTHO05D007851 1.6e-163 580.1 500 61.0
PGR083G1941 Punica granatum HOM05D006204 ORTHO05D007851 3.6e-163 578.9 495 61.0
C07p39160 Brassica napus HOM05D006204 ORTHO05D007851 4.7e-163 578.6 482 61.0
A06p39170 Brassica napus HOM05D006204 ORTHO05D007851 2.3e-162 576.2 453 64.0
Prupe.8G189200 Prunus persica HOM05D006204 ORTHO05D007851 3.1e-162 575.9 428 65.7
FvH4_2g17671 Fragaria vesca HOM05D006204 ORTHO05D007851 8.9e-162 574.3 492 59.1
FAN27G0099 Fragaria x ananassa HOM05D006204 ORTHO05D007851 1.5e-161 573.5 492 59.1
Gorai.007G160200 Gossypium raimondii HOM05D006204 ORTHO05D007851 1.5e-161 573.5 492 60.2
Thecc.01G209900 Theobroma cacao HOM05D006204 ORTHO05D007851 9.8e-161 570.9 485 61.2
Eucgr.H00714 Eucalyptus grandis HOM05D006204 ORTHO05D007851 1.3e-160 570.5 502 59.6
Gohir.D11G149400 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.3e-160 570.5 492 60.2
Carub.0008s0801 Capsella rubella HOM05D006204 ORTHO05D007851 2.2e-160 569.7 450 64.0
ClCG09G007900 Citrullus lanatus HOM05D006204 ORTHO05D007851 3.7e-160 568.9 439 65.4
CsaV3_7G027170 Cucumis sativus L. HOM05D006204 ORTHO05D007851 4.9e-160 568.5 495 60.6
Nitab4.5_0000038g0330 Nicotiana tabacum HOM05D006204 ORTHO05D007851 1.1e-159 567.4 405 68.4
BolC7t44436H Brassica oleracea HOM05D006204 ORTHO05D007851 1.9e-159 566.6 467 61.7
Sed0024966 Sechium edule HOM05D006204 ORTHO05D007851 1.9e-159 566.6 489 61.6
AL8G21270 Arabidopsis lyrata HOM05D006204 ORTHO05D007851 4.1e-159 565.5 444 64.0
HanXRQChr09g0257591 Helianthus annuus HOM05D006204 ORTHO05D007851 4.1e-159 565.5 462 63.0
Sp2g18790 Schrenkiella parvula HOM05D006204 ORTHO05D007851 7.0e-159 564.7 454 62.8
PSO210G2735 Papaver somniferum HOM05D006204 ORTHO05D007851 1.6e-158 563.5 422 67.3
PSO832G1370 Papaver somniferum HOM05D006204 ORTHO05D007851 2.7e-158 562.8 502 59.4
Migut.D00744 Erythranthe guttata HOM05D006204 ORTHO05D007851 6.0e-158 561.6 498 59.4
Thhalv10004189m.g Eutrema salsugineum HOM05D006204 ORTHO05D007851 1.3e-157 560.5 426 65.7
SGA_v2.0_scaffold566G52950 Striga asiatica HOM05D006204 ORTHO05D007851 3.9e-157 558.9 437 63.4
AT5G48440 Arabidopsis thaliana HOM05D006204 ORTHO05D007851 8.6e-157 557.8 451 63.0
Medtr7g051240 Medicago truncatula HOM05D006204 ORTHO05D007851 8.6e-157 557.8 418 66.0
Gohir.A11G143100 Gossypium hirsutum HOM05D006204 ORTHO05D007851 1.5e-156 557.0 492 58.7
FAN15G1742 Fragaria x ananassa HOM05D006204 ORTHO05D007851 8.1e-155 551.2 512 55.9
HanXRQChr09g0257621 Helianthus annuus HOM05D006204 ORTHO05D007851 3.1e-154 549.3 466 61.4
TPR.G26855 Trifolium pratense HOM05D006204 ORTHO05D007851 6.8e-154 548.1 416 64.9
Aa31sc661G10 Aethionema arabicum HOM05D006204 ORTHO05D007851 7.5e-153 544.7 472 60.0
Lj1g0017122 Lotus japonicus HOM05D006204 ORTHO05D007851 1.7e-152 543.5 421 63.4
Ca_07443_v3 Cicer arietinum L. HOM05D006204 ORTHO05D007851 2.9e-152 542.7 418 64.6
Hund09476 Selenicereus undatus HOM05D006204 ORTHO05D007851 1.1e-151 540.8 493 58.0
Lalb_Chr19g0126211 Lupinus albus HOM05D006204 ORTHO05D007851 1.4e-151 540.4 421 63.2
Phvul.008G135100 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 2.4e-151 539.7 494 56.1
Glyma.08G343200 Glycine max HOM05D006204 ORTHO05D007851 7.1e-151 538.1 421 63.4
THA.LOC104802642 Tarenaya hassleriana HOM05D006204 ORTHO05D007851 2.7e-150 536.2 454 61.2
AUR62008077 Chenopodium quinoa HOM05D006204 ORTHO05D007851 6.6e-149 531.6 498 56.4
Phvul.008G135200 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 8.6e-149 531.2 415 62.4
COL.COLO4_06929 Corchorus olitorius HOM05D006204 ORTHO05D007851 1.6e-147 526.9 489 57.3
Ah.02g111080 Amaranthus hybridus HOM05D006204 ORTHO05D007851 1.4e-146 523.9 419 60.4
ATR0743G111 Amborella trichopoda HOM05D006204 ORTHO05D007851 5.2e-146 521.9 419 62.5
CARHR183670 Cardamine hirsuta HOM05D006204 ORTHO05D007851 5.2e-146 521.9 431 60.3
Aqoxy2G00207 Aquilegia oxysepala HOM05D006204 ORTHO05D007851 6.8e-146 521.5 489 55.6
Psat3g151720 Pisum sativum HOM05D006204 ORTHO05D007851 1.5e-145 520.4 397 64.5
GSVIVG01003799001 Vitis vinifera HOM05D006204 ORTHO05D007851 2.6e-145 519.6 437 61.8
DCAR_000507 Daucus carota HOM05D006204 ORTHO05D007851 1.7e-144 516.9 418 61.5
MBI11_g40788_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 4.6e-142 508.8 374 66.6
Nn1g09591 Nelumbo nucifera HOM05D006204 ORTHO05D007851 6.6e-141 505.0 369 66.7
EL10Ac5g10598 Beta vulgaris HOM05D006204 ORTHO05D007851 8.1e-139 498.0 425 58.4
VMungo1383G3498 Vigna mungo HOM05D006204 ORTHO05D007851 1.4e-138 497.3 392 62.2
arahy.Tifrunner.gnm1.ann1.LI75FD Arachis hypogaea HOM05D006204 ORTHO05D007851 9.0e-138 494.6 466 56.9
unitig_736.g22899 Utricularia gibba HOM05D006204 ORTHO05D007851 1.9e-135 486.9 413 60.0
Hund09342 Selenicereus undatus HOM05D006204 ORTHO05D007851 2.1e-134 483.4 426 58.0
Zm00001eb318320 Zea mays HOM05D006204 ORTHO05D007851 2.1e-134 483.4 418 57.9
TAR362G0101 Trochodendron aralioides HOM05D006204 ORTHO05D007851 1.5e-129 467.2 384 64.6
Sc17g0001620 Simmondsia chinensis HOM05D006204 ORTHO05D007851 5.4e-127 458.8 369 59.3
VMungo1383G1750 Vigna mungo HOM05D006204 ORTHO05D007851 7.9e-126 454.9 370 60.3
Actinidia30007 Actinidia chinensis HOM05D006204 ORTHO05D007851 9.9e-121 438.0 283 76.7
AUR62028656 Chenopodium quinoa HOM05D006204 ORTHO05D007851 6.7e-117 425.2 420 53.3
AUR62027071 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.4e-106 390.2 421 49.4
AUR62030912 Chenopodium quinoa HOM05D006204 ORTHO05D007851 1.2e-102 377.9 422 47.9
Pp3c13_24490 Physcomitrium patens HOM05D006204 ORTHO05D007851 3.9e-101 372.9 491 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1300 Anthoceros agrestis HOM05D006204 ORTHO05D007851 8.2e-99 365.2 422 43.8
Hma1.2p1_0161F.1_g071500 Hydrangea macrophylla HOM05D006204 ORTHO05D007851 3.4e-97 359.8 222 78.4
Mapoly0020s0122 Marchantia polymorpha HOM05D006204 ORTHO05D007851 1.8e-93 347.4 417 43.9
SMO364G0271 Selaginella moellendorffii HOM05D006204 ORTHO05D007851 1.1e-87 328.2 400 44.5
AUR62043643 Chenopodium quinoa HOM05D006204 ORTHO05D007851 2.0e-84 317.4 300 53.0
Ah.01g024240 Amaranthus hybridus HOM05D006204 ORTHO05D007851 7.0e-82 308.9 362 47.5
Haze_03570 Corylus avellana HOM05D006204 ORTHO05D007851 3.0e-77 293.5 319 53.0
Atru.chr6.3536 Acer truncatum HOM05D006204 ORTHO05D007851 1.2e-76 291.6 260 58.8
MELO3C015716.2 Cucumis melo HOM05D006204 ORTHO05D007851 2.7e-70 270.4 272 56.6
Actinidia27653 Actinidia chinensis HOM05D006204 ORTHO05D007851 2.0e-57 227.6 171 71.3
QL09p047008 Quercus lobata HOM05D006204 ORTHO05D007851 4.5e-57 226.5 455 35.8
SEGI_17774 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 3.6e-54 216.9 221 53.8
Cre07.g346800 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D007851 1.0e-48 198.7 443 32.3
MELO3C029187.2 Cucumis melo HOM05D006204 ORTHO05D007851 2.3e-37 161.0 100 76.0
Cc10_g08090 Coffea canephora HOM05D006204 ORTHO05D007851 9.9e-36 155.6 98 71.4
Psat0s4407g0040 Pisum sativum HOM05D006204 ORTHO05D007851 6.0e-33 146.4 102 65.7
SEGI_39676 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 3.3e-31 140.6 122 51.6
HPP92_002747 Vanilla planifolia HOM05D006204 ORTHO05D007851 6.8e-29 132.9 116 55.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.8e-27 127.1 414 25.6
Atru.chr6.3537 Acer truncatum HOM05D006204 ORTHO05D007851 1.1e-26 125.6 83 72.3
Phvul.L001686 Phaseolus vulgaris HOM05D006204 ORTHO05D007851 1.9e-23 114.8 87 64.4
SEGI_16048 Sequoiadendron giganteum HOM05D006204 ORTHO05D007851 3.0e-16 90.9 92 47.8
HPP92_002746 Vanilla planifolia HOM05D006204 ORTHO05D007851 1.2e-12 79.0 76 52.6
MBI11_g40786_MAGBIO Magnolia biondii HOM05D006204 ORTHO05D007851 2.6e-12 77.8 112 48.2
Psat7g213000 Pisum sativum HOM05D006204 ORTHO05D007851 4.5e-12 77.0 75 56.0
Os09g0514100 Oryza sativa ssp. japonica HOM05D006204 ORTHO05D007851 5.4e-10 70.1 55 67.3
HPP92_002705 Vanilla planifolia HOM05D006204 ORTHO05D007851 4.6e-09 67.0 51 58.8
Cre16.g690767 Chlamydomonas reinhardtii HOM05D006204 ORTHO05D139572 1.3e-06 58.9 415 23.4


User provided reference genes

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