Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 4.2e-92 341.3 165 100.0
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 1.2e-54 216.9 163 69.9
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 8.1e-51 204.1 129 79.8
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.8e-42 176.4 128 68.0
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.8e-42 176.4 129 67.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 5.2e-42 174.9 131 62.6
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.5e-41 173.3 129 66.7
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 7.6e-41 171.0 133 63.9
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.7e-40 169.9 133 63.9
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.7e-40 169.9 131 65.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 2.9e-40 169.1 137 63.5
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 9.2e-39 164.1 129 62.0
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.2e-38 163.7 158 54.4
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 1.2e-38 163.7 139 61.2
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 1.6e-38 163.3 135 57.0
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 7.8e-38 161.0 134 61.2
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 7.8e-38 161.0 138 60.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 1.0e-37 160.6 129 63.6
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 1.7e-37 159.8 129 62.0
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.7e-37 159.8 129 62.8
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 2.3e-37 159.5 129 61.2
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 5.1e-37 158.3 139 60.4
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 6.6e-37 157.9 129 62.8
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 8.6e-37 157.5 129 62.0
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.1e-36 157.1 129 62.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 1.1e-36 157.1 152 54.6
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 1.9e-36 156.4 140 60.7
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.5e-36 156.0 137 56.2
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 2.5e-36 156.0 171 51.5
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 4.3e-36 155.2 135 54.8
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 5.6e-36 154.8 137 57.7
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.6e-35 153.3 170 48.2
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 4.7e-35 151.8 166 48.8
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 8.1e-35 151.0 129 58.1
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 8.1e-35 151.0 141 56.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 2.4e-34 149.4 144 53.5
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 4.0e-34 148.7 147 51.0
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 4.0e-34 148.7 125 58.4
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 5.2e-34 148.3 131 58.0
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 5.2e-34 148.3 125 56.0
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 6.9e-34 147.9 147 51.0
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 1.2e-33 147.1 124 58.1
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 1.5e-33 146.7 128 57.8
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 3.4e-33 145.6 134 58.2
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 3.4e-33 145.6 133 57.9
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 7.6e-33 144.4 145 53.1
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 9.9e-33 144.1 123 60.2
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.9e-33 144.1 168 48.2
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.9e-33 144.1 152 50.0
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 4.9e-32 141.7 148 54.1
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 6.4e-32 141.4 143 52.4
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.4e-31 140.2 135 56.3
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.9e-31 139.8 166 45.8
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.2e-31 139.0 152 47.4
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 4.2e-31 138.7 129 55.8
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 5.4e-31 138.3 125 54.4
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.6e-30 136.7 137 51.8
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.3e-29 133.7 162 46.3
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 5.1e-29 131.7 123 54.5
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 1.5e-28 130.2 146 53.4
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 2.1e-27 126.3 132 50.0
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 3.6e-27 125.6 130 52.3
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 4.8e-27 125.2 171 43.9
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 4.8e-27 125.2 154 44.8
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 1.1e-26 124.0 147 46.3
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 2.4e-26 122.9 113 54.9
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 3.1e-26 122.5 162 42.0
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 5.3e-26 121.7 155 46.5
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.5e-25 120.2 155 45.8
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 3.4e-25 119.0 133 48.1
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 4.5e-25 118.6 189 39.2
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 9.9e-25 117.5 130 48.5
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.1e-23 114.0 80 71.2
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 4.2e-23 112.1 170 42.4
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 7.1e-23 111.3 133 43.6
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.6e-22 110.2 146 43.2
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 3.5e-22 109.0 134 43.3
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 7.9e-22 107.8 134 46.3
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.8e-21 106.7 96 54.2
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.8e-21 106.7 96 54.2
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.5e-20 103.6 166 42.8
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 4.3e-20 102.1 190 35.3
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 1.3e-19 100.5 129 42.6
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 2.1e-19 99.8 166 38.6
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 4.8e-19 98.6 134 45.5
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 4.8e-19 98.6 136 41.9
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 6.2e-19 98.2 98 55.1
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 9.0e-18 94.4 163 39.3
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 2.6e-17 92.8 159 38.4
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 4.5e-17 92.0 196 33.7
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 5.8e-17 91.7 123 41.5
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 2.2e-16 89.7 115 46.1
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 2.9e-16 89.4 122 47.5
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 3.8e-16 89.0 137 40.9
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 8.4e-16 87.8 196 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.4e-15 87.0 131 38.2
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.4e-15 87.0 73 63.0
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.4e-15 87.0 115 47.0
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 2.4e-15 86.3 98 50.0
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 4.2e-15 85.5 158 37.3
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.3e-15 84.3 73 61.6
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.3e-15 84.3 73 61.6
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 9.3e-15 84.3 73 61.6
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 1.6e-14 83.6 48 77.1
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 1.6e-14 83.6 96 47.9
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 6.0e-14 81.6 193 32.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 7.9e-14 81.3 130 37.7
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.0e-13 80.9 109 43.1
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 1.5e-12 77.0 96 45.8
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 1.9e-12 76.6 52 69.2
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.8e-10 70.1 70 54.3
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 2.4e-10 69.7 123 37.4
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 2.4e-10 69.7 94 43.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 3.1e-10 69.3 122 36.9
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 3.8e-08 62.4 48 64.6
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 1.4e-07 60.5 52 61.5
SalBow4G1478 Salvia bowleyana HOM05D006778 ORTHO05D008341 1.9e-07 60.1 55 56.4
CSS0042063 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 5.5e-07 58.5 65 53.8


User provided reference genes

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