Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 0.0e+00 1291.9 647 100.0
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 9.8e-286 986.5 670 78.2
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 8.3e-269 930.2 607 80.9
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.2e-244 848.2 614 72.6
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 5.0e-221 771.5 618 66.0
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 3.9e-218 761.9 602 66.9
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 1.1e-217 760.4 621 64.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 9.7e-217 757.3 613 64.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.1e-215 752.3 602 65.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 4.1e-215 751.9 588 67.7
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.0e-214 749.6 602 65.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.3e-213 746.9 591 65.7
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.5e-213 744.2 625 63.2
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.2e-212 742.3 638 63.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 9.4e-212 740.7 647 62.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.2e-211 740.3 605 63.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 7.9e-211 737.6 590 63.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.9e-210 735.3 606 62.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 8.8e-210 734.2 618 62.1
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.1e-209 733.8 623 61.8
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.5e-209 733.4 599 62.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 2.0e-209 733.0 616 62.0
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 9.7e-209 730.7 621 61.8
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.8e-208 729.2 592 67.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.5e-206 723.4 621 61.4
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.6e-206 722.6 625 60.3
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.3e-205 720.3 625 60.6
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 3.8e-205 718.8 607 61.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.5e-205 718.0 611 62.5
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.1e-204 717.2 620 61.5
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 7.2e-204 714.5 600 63.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 9.4e-204 714.1 609 61.6
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.1e-203 713.0 607 61.8
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 2.7e-203 712.6 603 62.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 3.6e-203 712.2 621 61.0
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.6e-203 712.2 602 62.6
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 6.1e-203 711.4 622 60.8
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 8.0e-203 711.1 609 59.8
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 8.0e-203 711.1 601 62.7
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.4e-202 710.3 626 60.1
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 5.2e-202 708.4 613 60.5
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 5.2e-202 708.4 617 61.4
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 8.8e-202 707.6 609 61.7
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 8.8e-202 707.6 603 62.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 8.8e-202 707.6 608 61.8
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 8.8e-202 707.6 610 60.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-201 707.2 624 60.6
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.0e-201 706.4 608 61.5
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 2.2e-200 703.0 626 60.5
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.7e-200 702.2 633 59.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.1e-199 699.1 615 61.8
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 9.1e-199 697.6 621 60.7
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.6e-198 696.0 639 57.9
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 2.6e-198 696.0 602 59.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.5e-198 695.7 628 59.2
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.5e-198 695.3 623 60.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.9e-198 694.9 632 58.7
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 7.7e-198 694.5 619 58.8
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.0e-197 694.1 639 59.2
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.0e-197 694.1 639 59.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 3.8e-197 692.2 616 59.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 6.5e-197 691.4 616 59.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 8.5e-197 691.0 602 62.6
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.5e-196 690.3 621 58.5
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.9e-196 689.9 595 60.3
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.2e-196 689.1 632 58.2
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-195 687.2 632 58.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-195 687.2 605 60.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.2e-195 687.2 600 60.5
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 6.1e-195 684.9 595 61.7
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 8.0e-195 684.5 612 60.6
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.8e-194 683.3 602 61.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 8.8e-194 681.0 628 57.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 3.3e-193 679.1 615 58.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 9.7e-193 677.6 596 59.7
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.3e-192 677.2 621 58.0
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.4e-191 673.7 597 59.0
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 2.4e-191 672.9 609 60.4
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.7e-190 669.5 605 59.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.5e-190 669.1 611 57.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.9e-189 666.0 610 59.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 3.8e-189 665.6 649 54.7
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.0e-189 665.2 610 58.7
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.6e-187 660.2 551 62.6
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 3.6e-187 659.1 613 56.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 8.0e-187 657.9 610 58.5
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.0e-186 657.5 659 55.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 5.4e-183 645.2 615 56.1
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 2.0e-182 643.3 659 53.6
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.3e-181 640.6 602 59.3
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.7e-181 640.2 603 58.2
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.9e-181 639.4 620 55.5
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 8.6e-181 637.9 620 55.3
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.2e-178 628.6 614 56.8
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 6.8e-178 628.2 603 57.0
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 5.7e-177 625.2 609 58.6
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.3e-173 614.0 624 55.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.6e-173 611.3 567 58.0
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 4.7e-171 605.5 609 54.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.7e-168 595.9 599 54.8
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.4e-167 593.2 470 66.4
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 6.0e-166 588.6 603 53.2
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.4e-162 577.4 606 51.8
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.8e-162 577.0 493 62.7
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 8.3e-160 568.2 435 68.5
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.4e-159 567.4 453 65.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.5e-156 557.4 605 51.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 2.0e-153 547.0 608 49.7
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.3e-152 544.3 615 50.4
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.5e-145 520.8 432 63.4
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.1e-139 500.4 399 68.2
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 6.6e-133 478.8 571 48.9
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 1.5e-129 467.6 611 43.9
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.1e-125 452.6 594 44.1
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.6e-124 449.1 315 74.0
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 9.3e-119 431.8 605 44.0
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.6e-115 421.0 602 43.7
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.4e-114 417.9 504 47.8
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 4.2e-111 406.4 383 56.1
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.3e-109 400.6 315 64.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.1e-108 398.3 541 44.4
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.2e-99 367.5 241 79.3
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.7e-88 331.3 397 50.1
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.4e-85 321.6 618 34.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.1e-84 318.5 247 67.2
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 6.8e-77 292.7 287 57.8
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.3e-75 285.8 177 81.4
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 9.1e-74 282.3 219 65.8
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 2.7e-73 280.8 352 44.9
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 6.5e-72 276.2 414 40.6
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.2e-68 265.4 229 60.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 4.9e-59 233.4 166 68.1
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.1e-58 230.3 135 84.4
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 9.2e-50 202.6 153 66.0
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.7e-48 198.4 239 49.0
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.0e-48 197.6 176 63.6
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.5e-47 195.3 169 62.7
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 7.3e-47 193.0 263 48.7
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.2e-41 175.6 279 41.2
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.1e-39 169.1 171 51.5
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 3.6e-38 164.1 114 66.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.3e-37 161.4 135 63.0
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-28 132.5 80 80.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.2e-26 124.0 461 26.7
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.2e-17 95.9 188 39.9
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.5e-15 89.0 503 25.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.5e-15 88.2 45 91.1
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.9e-11 73.9 100 43.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.3e-08 65.9 57 49.1


User provided reference genes

Program Settings