Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 1.9e-147 525.8 255 100.0
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.8e-137 492.7 255 92.9
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 8.7e-137 490.3 255 92.9
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 5.6e-136 487.6 255 91.8
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 7.4e-136 487.3 256 92.2
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 6.2e-135 484.2 255 91.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 8.1e-135 483.8 255 91.8
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.2e-133 479.9 255 90.2
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.0e-133 479.2 255 89.4
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 2.6e-133 478.8 255 89.8
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 9.9e-133 476.9 255 90.2
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 3.8e-132 474.9 255 89.4
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 6.4e-132 474.2 255 89.0
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 6.4e-132 474.2 255 88.6
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.9e-131 472.6 253 89.3
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 89.4
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 89.0
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 3.2e-131 471.9 255 89.4
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 4.2e-131 471.5 255 88.6
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.1e-130 469.2 255 89.4
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 88.6
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 89.8
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.6
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 88.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 6.0e-130 467.6 256 89.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 87.8
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 88.2
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 89.8
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 88.6
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 88.2
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 7.9e-130 467.2 255 88.6
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 88.2
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 1.0e-129 466.8 255 88.6
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 88.6
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 88.2
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 87.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 88.6
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 3.9e-129 464.9 256 87.9
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 3.9e-129 464.9 255 87.5
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 88.2
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 5.1e-129 464.5 256 89.1
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.5
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 8.7e-129 463.8 256 87.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 1.1e-128 463.4 256 88.3
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 1.5e-128 463.0 253 89.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.5
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.8
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 3.3e-128 461.8 254 85.8
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.3e-128 461.5 257 87.2
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 7.4e-128 460.7 253 88.9
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 7.4e-128 460.7 253 88.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 7.4e-128 460.7 256 87.9
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-127 459.9 253 88.5
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.3e-127 459.9 256 88.3
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 1.3e-127 459.9 256 87.9
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 87.5
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 2.1e-127 459.1 253 88.1
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.1e-127 459.1 255 87.5
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.8e-127 458.8 256 87.5
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.8e-127 458.8 255 85.9
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.8e-127 458.8 254 86.2
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 3.7e-127 458.4 255 86.7
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.7e-127 458.4 254 86.2
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 4.8e-127 458.0 253 87.4
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 85.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 87.8
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 1.4e-126 456.4 255 86.7
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 85.5
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 86.3
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 3.1e-126 455.3 253 85.8
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 86.3
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 87.8
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.9e-126 454.1 254 85.0
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 86.7
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 6.9e-126 454.1 256 85.9
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 9.0e-126 453.8 253 87.7
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 9.0e-126 453.8 255 85.5
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 9.0e-126 453.8 256 86.3
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 9.0e-126 453.8 256 86.3
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 9.0e-126 453.8 306 75.2
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 87.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.2e-125 453.4 255 86.7
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.5e-125 453.0 253 85.4
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 2.0e-125 452.6 256 86.3
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 2.0e-125 452.6 253 87.7
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.6e-125 452.2 255 86.3
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 2.6e-125 452.2 283 80.6
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.9
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 85.5
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 1.7e-124 449.5 252 87.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 1.7e-124 449.5 252 87.7
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 83.5
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 256 85.9
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 84.7
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 85.1
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 4.9e-124 448.0 253 85.4
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 85.1
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 6.5e-124 447.6 255 84.7
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 8.4e-124 447.2 255 84.3
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 85.1
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-123 446.0 255 84.3
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.3e-121 439.9 255 83.1
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.1e-120 436.8 262 82.4
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 2.5e-120 435.6 255 84.3
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 4.3e-120 434.9 257 81.3
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.8e-119 432.2 250 80.0
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.8e-118 429.5 294 75.2
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.8e-118 429.5 240 82.5
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 2.4e-118 429.1 257 80.2
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.5e-117 426.4 244 82.8
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.5e-117 426.4 255 82.4
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 5.5e-115 417.9 240 84.6
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 1.2e-114 416.8 259 81.1
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 6.1e-114 414.5 219 90.9
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.1e-114 414.5 240 84.6
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 7.2e-107 391.0 229 78.6
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.6e-106 389.8 239 77.0
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 1.4e-105 386.7 255 77.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 3.9e-105 385.2 250 72.0
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 2.6e-104 382.5 260 75.0
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.8e-103 378.3 238 73.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 2.4e-102 375.9 319 63.3
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.1e-102 375.6 250 71.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.3e-102 374.8 238 74.4
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.7e-100 369.8 232 77.2
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 6.5e-100 367.9 200 86.5
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.5e-99 366.7 255 72.9
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.6e-98 362.1 232 77.2
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 4.4e-96 355.1 246 69.9
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 7.0e-94 347.8 240 69.2
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 9.1e-94 347.4 240 74.6
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.8e-89 333.2 249 69.1
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 5.0e-84 315.1 160 92.5
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.1e-83 313.9 161 92.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 8.0e-82 307.8 162 87.7
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 6.8e-81 304.7 248 58.5
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-80 303.9 285 61.1
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 1.3e-79 300.4 171 87.1
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 5.0e-76 288.5 201 71.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.3e-75 285.8 159 86.2
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 1.0e-73 280.8 162 85.2
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 6.3e-71 271.6 232 51.7
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.0e-64 250.0 268 54.5
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 4.7e-58 228.8 135 80.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 4.0e-57 225.7 118 89.8
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 2.9e-55 219.5 116 91.4
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 5.2e-49 198.7 229 41.5
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.5e-48 197.2 107 90.7
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.4e-46 190.7 121 76.9
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.0e-44 184.5 165 61.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.7e-44 183.7 100 88.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 3.6e-42 176.0 209 45.9
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.4e-40 169.5 100 83.0
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.6e-37 160.6 83 86.7
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.0e-36 157.9 89 82.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 1.0e-36 157.9 84 84.5
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-35 154.5 83 85.5
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.1e-34 150.2 89 78.7
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.8e-34 149.1 89 77.5
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.9e-33 145.2 89 76.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.2e-32 144.4 75 86.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 4.4e-32 142.5 97 76.3
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.4e-31 138.7 81 80.2
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-30 137.9 81 80.2
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 81.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 81.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 81.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 2.7e-29 133.3 75 81.3
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 3.5e-29 132.9 84 78.6
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.6e-29 132.5 81 76.5
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.0e-28 131.3 75 80.0
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.3e-27 126.3 75 77.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.2e-26 122.1 76 76.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.4e-25 120.9 71 78.9
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 3.1e-25 119.8 82 75.6
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.3e-12 77.8 55 72.7
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.1e-11 74.7 42 83.3


User provided reference genes

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