Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 5.5e-34 147.1 78 100.0
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.0e-24 116.3 78 80.8
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.5e-18 95.1 69 72.5
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.3e-16 88.6 71 70.4
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.5e-15 85.9 62 72.6
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 3.4e-15 84.7 76 63.2
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.4e-15 84.7 52 80.8
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 4.4e-15 84.3 64 70.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.7e-15 84.0 49 83.7
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 7.5e-15 83.6 51 80.4
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 7.5e-15 83.6 51 80.4
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.3e-14 82.8 49 81.6
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.7e-14 82.4 62 71.0
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.2e-14 82.0 49 81.6
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.9e-14 80.9 71 62.0
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 8.3e-14 80.1 67 67.2
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.4e-13 79.3 62 67.7
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.4e-13 79.3 70 61.4
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.8e-13 79.0 67 59.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 5.4e-13 77.4 73 58.9
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 5.4e-13 77.4 59 66.1
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 7.0e-13 77.0 49 79.6
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 9.2e-13 76.6 70 61.4
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 9.2e-13 76.6 48 79.2
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 3.5e-12 74.7 53 66.0
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 3.5e-12 74.7 44 79.5
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 4.6e-12 74.3 71 60.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 4.6e-12 74.3 65 58.5
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 5.9e-12 73.9 82 56.1
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 5.9e-12 73.9 61 63.9
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 7.8e-12 73.6 49 73.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.0e-11 73.2 67 55.2
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.0e-11 73.2 62 61.3
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.0e-11 73.2 66 63.6
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.0e-11 73.2 60 61.7
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.0e-11 73.2 80 55.0
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.7e-11 72.4 67 56.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 2.3e-11 72.0 48 70.8
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 2.3e-11 72.0 76 56.6
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 3.9e-11 71.2 69 53.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.0e-11 70.9 52 63.5
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 5.0e-11 70.9 56 60.7
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 6.6e-11 70.5 67 58.2
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 6.6e-11 70.5 49 67.3
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.1e-10 69.7 70 57.1
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 1.1e-10 69.7 71 57.7
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.5e-10 69.3 48 75.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.5e-10 68.6 69 49.3
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 4.3e-10 67.8 48 68.8
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 4.3e-10 67.8 59 62.7
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 5.6e-10 67.4 70 52.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 7.3e-10 67.0 46 71.7
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 7.3e-10 67.0 66 54.5
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 7.3e-10 67.0 57 63.2
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 9.5e-10 66.6 49 63.3
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 9.5e-10 66.6 49 63.3
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.6e-09 65.9 54 61.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.1e-09 65.5 45 66.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.1e-09 65.5 68 54.4
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 2.1e-09 65.5 47 63.8
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.8e-09 65.1 48 68.8
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 2.8e-09 65.1 64 57.8
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 3.6e-09 64.7 46 69.6
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 4.7e-09 64.3 53 60.4
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 6.2e-09 63.9 48 66.7
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 6.2e-09 63.9 68 51.5
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 8.0e-09 63.5 74 52.7
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.0e-08 63.2 48 60.4
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.0e-08 63.2 48 60.4
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.4e-08 62.8 61 59.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.8e-08 62.4 66 48.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.8e-08 62.4 61 50.8
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.8e-08 62.4 51 62.7
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 2.3e-08 62.0 68 47.1
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 3.1e-08 61.6 46 65.2
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 4.0e-08 61.2 48 58.3
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 4.0e-08 61.2 48 58.3
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 5.2e-08 60.8 48 58.3
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 5.2e-08 60.8 59 55.9
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 8.9e-08 60.1 70 48.6
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 8.9e-08 60.1 66 50.0
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.5e-07 59.3 48 58.3
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 2.0e-07 58.9 56 55.4
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 2.0e-07 58.9 40 70.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.4e-07 58.2 64 54.7
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 4.4e-07 57.8 48 56.2
Migut.K01062 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.7e-06 55.8 43 65.1
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 1.7e-06 55.8 47 55.3
CiPaw.01G161200 Carya illinoinensis HOM05D008368 ORTHO05D010489 3.7e-06 54.7 51 52.9
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 4.9e-06 54.3 38 68.4
MSTRG.12567 Avicennia marina HOM05D007833 ORTHO05D009855 6.4e-06 53.9 28 85.7
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 6.4e-06 53.9 43 58.1


User provided reference genes

Program Settings