Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.3e-101 371.3 185 100.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-66 255.4 237 62.4
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.6e-60 236.5 228 60.5
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.9e-59 231.1 237 58.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.1e-51 205.7 160 69.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.5e-50 203.4 236 51.3
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.7e-49 199.9 236 50.4
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.4e-48 196.8 236 49.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.5e-48 196.1 145 64.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 8.7e-46 187.6 149 63.8
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 8.7e-46 187.6 145 64.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.7e-44 182.2 145 61.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-43 180.6 146 61.0
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.4e-43 179.5 236 45.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.4e-43 179.5 144 61.8
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.1e-43 178.7 146 60.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.5e-42 176.8 144 60.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.5e-42 176.8 144 60.4
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.0e-42 176.4 146 58.9
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 4.5e-42 175.3 144 58.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 5.9e-42 174.9 146 59.6
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 3.8e-41 172.2 144 59.7
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 5.0e-41 171.8 145 57.9
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 8.5e-41 171.0 146 58.2
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 8.5e-41 171.0 143 58.7
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.1e-40 170.6 144 59.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.9e-40 169.9 146 56.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.2e-40 169.1 138 61.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.5e-40 168.3 145 56.6
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.6e-39 166.8 145 57.2
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 3.6e-39 165.6 147 56.5
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.0e-38 164.1 144 54.9
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.9e-38 162.2 139 59.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.9e-38 162.2 145 55.9
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.3e-36 157.1 147 53.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.8e-36 156.0 145 53.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.7e-36 155.6 144 53.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.7e-36 155.6 144 52.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.7e-36 155.6 145 52.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 3.7e-36 155.6 144 52.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 6.3e-36 154.8 145 54.5
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 8.2e-36 154.5 140 54.3
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-35 153.7 145 54.5
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 2.4e-35 152.9 145 53.1
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.4e-35 152.9 145 53.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.4e-35 152.9 144 52.1
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.1e-35 152.5 144 51.4
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.1e-35 152.5 144 51.4
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 3.1e-35 152.5 150 54.0
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.1e-35 152.1 145 52.4
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.1e-35 152.1 145 53.8
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 5.3e-35 151.8 145 50.3
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 6.9e-35 151.4 144 52.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 6.9e-35 151.4 145 52.4
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.9e-35 151.4 145 52.4
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.9e-35 151.4 145 53.8
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.1e-35 151.0 145 50.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.5e-34 150.2 140 51.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.5e-34 150.2 146 52.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-34 149.8 145 53.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.6e-34 149.4 145 53.1
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 7.7e-34 147.9 145 51.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.2e-33 146.4 144 54.9
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.0e-33 145.2 144 46.5
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.5e-33 144.8 141 49.6
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 6.5e-33 144.8 145 51.7
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.5e-33 144.4 146 50.7
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.5e-32 142.9 146 50.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.5e-32 142.9 140 51.4
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.5e-32 142.9 143 53.1
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.5e-32 142.9 146 51.4
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.5e-32 142.9 145 49.0
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.2e-32 142.5 145 48.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.2e-32 142.5 143 46.9
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.5e-32 141.7 144 47.9
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.5e-32 141.7 145 48.3
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 7.2e-32 141.4 146 50.7
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 9.4e-32 141.0 146 50.0
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 9.4e-32 141.0 145 51.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.6e-31 140.2 193 39.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.1e-31 139.8 146 48.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.1e-31 139.8 146 48.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.7e-31 139.4 144 48.6
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.7e-31 138.7 144 47.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 6.1e-31 138.3 145 46.9
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.1e-31 138.3 145 46.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-30 137.5 144 45.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.0e-30 137.5 144 45.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.4e-30 137.1 144 47.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-30 137.1 144 45.8
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-30 137.1 144 45.8
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.4e-30 137.1 140 47.1
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.3e-30 136.3 144 45.8
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.9e-30 135.6 145 44.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.2e-30 135.2 145 49.0
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-29 133.7 144 45.8
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-28 130.6 141 44.7
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.8e-28 128.6 116 57.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.2e-28 127.9 116 57.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.1e-27 127.5 182 36.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.8e-27 126.7 146 43.8
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.8e-27 126.7 145 44.1
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.8e-27 126.7 137 42.3
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.1e-27 125.9 145 46.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 5.3e-27 125.2 142 45.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 9.1e-27 124.4 139 45.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-26 124.0 146 44.5
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.2e-26 124.0 147 42.9
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.6e-26 123.6 144 38.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.0e-26 123.2 150 42.0
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 3.5e-26 122.5 147 44.9
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 3.5e-26 122.5 114 54.4
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.5e-26 122.5 148 43.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.5e-26 122.1 154 46.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 5.9e-26 121.7 147 44.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 5.9e-26 121.7 147 44.2
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 5.9e-26 121.7 147 44.2
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.9e-26 121.7 174 39.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 7.7e-26 121.3 143 44.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.7e-26 121.3 145 42.1
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.7e-25 120.2 147 43.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.7e-25 120.2 147 43.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.2e-25 119.8 144 41.7
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.0e-25 118.6 146 42.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.0e-25 118.6 174 37.9
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 5.0e-25 118.6 131 45.0
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 5.0e-25 118.6 144 40.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 8.5e-25 117.9 145 41.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.1e-24 117.5 142 41.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.5e-24 117.1 146 43.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.5e-24 117.1 143 42.7
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.9e-24 116.7 146 44.5
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.2e-24 115.9 144 44.4
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 5.5e-24 115.2 175 36.6
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 5.5e-24 115.2 174 37.4
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.2e-24 114.8 90 62.2
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.2e-24 114.8 123 48.8
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 9.4e-24 114.4 142 39.4
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.2e-23 114.0 147 44.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-23 112.5 152 44.1
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-23 112.5 152 44.1
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 6.1e-23 111.7 145 44.8
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.1e-23 111.7 141 41.8
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.1e-23 111.7 98 57.1
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 3.0e-22 109.4 147 42.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.2e-21 107.5 116 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.3e-21 105.9 142 35.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.3e-20 104.0 140 37.9
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.3e-20 104.0 148 35.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.7e-20 103.6 129 40.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.8e-20 102.8 78 64.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.7e-20 102.4 145 39.3
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.9e-18 95.1 141 38.3
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 3.8e-17 92.4 145 35.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 5.0e-17 92.0 129 38.0
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.5e-16 90.5 95 48.4
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-16 90.5 139 42.4
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 4.2e-16 89.0 124 41.1
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.3e-14 83.2 98 44.9
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-14 83.2 156 38.5
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.4e-13 79.3 161 27.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 4.4e-13 79.0 77 51.9
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.2e-12 76.6 79 46.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.1e-11 72.8 118 36.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 4.1e-11 72.4 165 27.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 9.1e-11 71.2 83 44.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 5.0e-09 65.5 70 48.6
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 6.5e-09 65.1 90 36.7
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 8.6e-09 64.7 57 52.6
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.5e-08 63.2 53 62.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-06 55.8 110 32.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 4.0e-06 55.8 92 33.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 6.8e-06 55.1 90 34.4


User provided reference genes

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