Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 5.7e-84 315.1 290 100.0
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 3.5e-41 172.9 341 71.8
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 3.6e-30 136.3 319 62.4
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 2.0e-28 130.6 319 61.8
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 2.2e-27 127.1 319 59.9
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 4.9e-27 125.9 317 59.9
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 4.9e-27 125.9 319 59.9
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 5.4e-26 122.5 319 59.2
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 1.2e-25 121.3 317 59.3
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 2.1e-25 120.6 319 58.6
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 2.7e-25 120.2 319 57.7
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 6.0e-25 119.0 319 58.6
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 1.7e-24 117.5 319 58.0
Lj5A105G57 Lonicera japonica HOM05D006238 ORTHO05D007458 1.7e-24 117.5 132 56.1
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 1.7e-24 117.5 319 58.0
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 5.1e-24 115.9 319 57.7
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 1.1e-23 114.8 319 65.2
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 1.1e-23 114.8 319 58.0
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 2.5e-23 113.6 139 47.5
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 2.5e-23 113.6 319 57.7
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 2.5e-23 113.6 317 58.7
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 5.6e-23 112.5 319 64.6
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 1.2e-22 111.3 319 58.3
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 2.8e-22 110.2 319 57.1
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 3.6e-22 109.8 319 57.4
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 8.1e-22 108.6 319 64.3
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 8.1e-22 108.6 319 57.7
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 8.1e-22 108.6 318 56.9
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.4e-21 107.8 133 48.9
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.1e-21 106.7 319 56.4
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.1e-21 106.7 319 56.4
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 3.1e-21 106.7 319 56.4
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 5.2e-21 105.9 317 57.4
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 6.9e-21 105.5 317 57.1
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 6.9e-21 105.5 132 47.0
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 1.2e-20 104.8 319 57.1
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.5e-20 104.4 319 56.4
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.5e-20 104.4 317 57.1
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 1.5e-20 104.4 317 56.8
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 2.0e-20 104.0 319 56.1
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 2.6e-20 103.6 319 56.7
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.6e-20 103.6 290 30.0
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 2.6e-20 103.6 318 56.0
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 3.4e-20 103.2 319 56.7
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 3.4e-20 103.2 319 56.7
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 4.4e-20 102.8 319 55.5
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 4.4e-20 102.8 319 55.5
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 5.8e-20 102.4 320 56.9
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.8e-20 102.4 319 55.2
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 5.8e-20 102.4 318 55.7
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 7.6e-20 102.1 319 55.8
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 7.6e-20 102.1 319 55.8
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 9.9e-20 101.7 135 44.4
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 1.3e-19 101.3 319 55.2
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 1.3e-19 101.3 133 46.6
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 3.8e-19 99.8 154 43.5
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 4.9e-19 99.4 132 46.2
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 6.4e-19 99.0 56 82.1
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 1.1e-18 98.2 133 43.6
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 1.1e-18 98.2 320 56.9
Nitab4.5_0001961g0050 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.4e-18 95.9 139 43.9
ATR0064G078 Amborella trichopoda HOM05D006238 ORTHO05D007458 7.1e-18 95.5 318 54.4
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.2e-17 94.7 319 55.2
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 1.6e-17 94.4 319 55.2
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 2.7e-17 93.6 133 43.6
BraA02t04934Z Brassica rapa HOM05D006238 ORTHO05D007458 3.5e-17 93.2 319 53.9
SGA_v2.0_scaffold28G11764 Striga asiatica HOM05D006238 ORTHO05D007458 3.5e-17 93.2 319 59.9
Peaxi162Scf00106g00109 Petunia axillaris HOM05D006238 ORTHO05D007458 4.6e-17 92.8 319 56.7
BcaNung04721 Brassica carinata HOM05D006238 ORTHO05D007458 6.0e-17 92.4 319 53.9
C02p03310 Brassica napus HOM05D006238 ORTHO05D007458 6.0e-17 92.4 319 53.9
BolC2t06295H Brassica oleracea HOM05D006238 ORTHO05D007458 6.0e-17 92.4 319 53.9
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 6.0e-17 92.4 317 54.3
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 7.8e-17 92.0 136 40.4
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 1.0e-16 91.7 136 40.4
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 1.3e-16 91.3 297 49.8
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 1.3e-16 91.3 319 55.5
PGSC0003DMG401024548 Solanum tuberosum HOM05D006238 ORTHO05D007458 1.3e-16 91.3 319 55.8
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 1.7e-16 90.9 319 55.5
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 1.7e-16 90.9 315 55.2
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.7e-16 90.9 319 55.5
CARHR205290 Cardamine hirsuta HOM05D006238 ORTHO05D007458 2.3e-16 90.5 136 39.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 2.3e-16 90.5 56 75.0
Sp6g35050 Schrenkiella parvula HOM05D006238 ORTHO05D007458 2.3e-16 90.5 135 39.3
AL6G18240 Arabidopsis lyrata HOM05D006238 ORTHO05D007458 3.0e-16 90.1 136 39.7
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 3.9e-16 89.7 135 40.0
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 3.9e-16 89.7 136 39.7
THA.LOC104801299 Tarenaya hassleriana HOM05D006238 ORTHO05D007458 1.9e-15 87.4 318 61.3
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 2.5e-15 87.0 57 68.4
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 2.5e-15 87.0 135 38.5
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 2.5e-15 87.0 319 53.9
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 2.5e-15 87.0 290 46.6
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 5.6e-15 85.9 134 38.8
BcaB01g05688 Brassica carinata HOM05D006238 ORTHO05D007458 9.6e-15 85.1 134 38.1
A03p03520 Brassica napus HOM05D006238 ORTHO05D007458 9.6e-15 85.1 134 38.8
BraA03t09702Z Brassica rapa HOM05D006238 ORTHO05D007458 9.6e-15 85.1 134 38.8
Hund26924 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.3e-14 84.7 54 77.8
BcaB01g05644 Brassica carinata HOM05D006238 ORTHO05D007458 1.6e-14 84.3 134 38.1
BolC3t12934H Brassica oleracea HOM05D006238 ORTHO05D007458 1.6e-14 84.3 134 38.1
BcaB01g05687 Brassica carinata HOM05D006238 ORTHO05D007458 4.8e-14 82.8 134 37.3
SalBow5G1318 Salvia bowleyana HOM05D006238 ORTHO05D007458 1.1e-13 81.6 130 40.8
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 4.0e-13 79.7 56 66.1
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 5.3e-13 79.3 56 62.5
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 4.5e-12 76.3 56 62.5
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.7e-11 74.3 64 57.8
Dinv38791 Davidia involucrata HOM05D006238 ORTHO05D007458 4.9e-11 72.8 39 89.7
Phvul.009G193701 Phaseolus vulgaris HOM05D006238 ORTHO05D007458 8.4e-11 72.0 40 85.0
Cc04_g15060 Coffea canephora HOM05D006238 ORTHO05D007458 1.4e-10 71.2 39 87.2
Nitab4.5_0001410g0100 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.4e-10 71.2 37 91.9
PSO339G0502 Papaver somniferum HOM05D006238 ORTHO05D007458 1.4e-10 71.2 57 63.2
FAN08G1023 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.9e-10 70.9 37 89.2
FAN13G1324 Fragaria x ananassa HOM05D000113 ORTHO05D002571 1.9e-10 70.9 37 89.2
DCAR_016594 Daucus carota HOM05D006238 ORTHO05D007458 2.4e-10 70.5 39 84.6
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 4.2e-10 69.7 38 84.2
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 4.2e-10 69.7 57 61.4
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 4.2e-10 69.7 57 63.2
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 4.2e-10 69.7 38 84.2
Gorai.008G197100 Gossypium raimondii HOM05D006238 ORTHO05D007458 1.2e-09 68.2 39 79.5
Manes.06G087000 Manihot esculenta HOM05D006238 ORTHO05D007458 1.6e-09 67.8 39 82.1
Nitab4.5_0005160g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 1.6e-09 67.8 38 81.6
AagrBONN_evm.TU.Sc2ySwM_228.2402 Anthoceros agrestis HOM05D006238 ORTHO05D007458 2.1e-09 67.4 37 78.4
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 3.5e-09 66.6 40 75.0
PGSC0003DMG400005395 Solanum tuberosum HOM05D006238 ORTHO05D007458 6.0e-09 65.9 39 76.9
Lsat_1_v5_gn_1_13640 Lactuca sativa HOM05D006238 ORTHO05D007458 1.0e-08 65.1 132 34.8
SMO364G0258 Selaginella moellendorffii HOM05D006238 ORTHO05D007458 3.9e-08 63.2 56 53.6
Peaxi162Scf00201g00133 Petunia axillaris HOM05D006238 ORTHO05D007458 5.1e-08 62.8 288 52.4
CBR_g18689 Chara braunii HOM05D006238 ORTHO05D007458 1.3e-06 58.2 56 46.4
Hund26925 Selenicereus undatus HOM05D006238 ORTHO05D007458 1.6e-06 57.8 37 70.3
QL93p0869_0056 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-06 57.4 31 83.9
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 3.7e-06 56.6 33 81.8
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 6.2e-06 55.8 35 80.0


User provided reference genes

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