Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0143700 Rhododendron simsii HOM05D001813 ORTHO05D009599 4.1e-119 431.4 217 100.0
Rhsim12G0143600 Rhododendron simsii HOM05D007913 ORTHO05D009599 9.1e-18 94.7 71 71.8
Rhsim03G0238400 Rhododendron simsii HOM05D002350 ORTHO05D000091 6.5e-16 88.6 49 85.7
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 7.2e-15 85.1 53 83.0
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 3.9e-13 79.3 62 69.4
Dinv09801 Davidia involucrata HOM05D007913 ORTHO05D009599 1.7e-11 73.9 71 54.9
vmacro06244 Vaccinium macrocarpon HOM05D002350 ORTHO05D000091 1.7e-11 73.9 72 56.9
vmacro16450 Vaccinium macrocarpon HOM05D010627 ORTHO05D009599 2.2e-11 73.6 70 65.7
CSS0025071 Camellia sinensis var. sinensis HOM05D007913 ORTHO05D009599 4.8e-11 72.4 71 60.6
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.5e-09 67.4 51 66.7
CSS0027092 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.5e-09 67.4 52 67.3
CSS0040795 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.5e-09 67.4 52 67.3
CSS0048273 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 1.5e-09 67.4 52 67.3
TPR.G30756 Trifolium pratense HOM05D001813 ORTHO05D004073 1.5e-09 67.4 43 81.4
Dinv41662 Davidia involucrata HOM05D002350 ORTHO05D000091 2.6e-09 66.6 48 70.8
Lsat_1_v5_gn_6_29841 Lactuca sativa HOM05D001813 ORTHO05D018408 5.9e-09 65.5 36 94.4
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 7.7e-09 65.1 49 65.3
EL10Ac3g05151 Beta vulgaris HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Cfa008078 Carpinus fangiana HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Ca_18000_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Cc10_g08630 Coffea canephora HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
COL.COLO4_05233 Corchorus olitorius HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Haze_13957 Corylus avellana HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Dinv07668 Davidia involucrata HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Dinv22110 Davidia involucrata HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
ECA232G1733 Erigeron canadensis HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Gohir.A08G230100 Gossypium hirsutum HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Gohir.D08G250500 Gossypium hirsutum HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Gorai.004G267200 Gossypium raimondii HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Lsat_1_v5_gn_4_107960 Lactuca sativa HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Lalb_Chr12g0205681 Lupinus albus HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Lalb_Chr13g0294741 Lupinus albus HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Medtr8g083210 Medicago truncatula HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Psat5g099120 Pisum sativum HOM05D001813 ORTHO05D004073 1.7e-08 63.9 42 81.0
PGR042G3523 Punica granatum HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
Rhsim01G0004600 Rhododendron simsii HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
TPR.G11916 Trifolium pratense HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
TWI12G0391 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
TWI75G0485 Tripterygium wilfordii HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
vmacro13124 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 1.7e-08 63.9 36 91.7
arahy.Tifrunner.gnm1.ann1.45GZWB Arachis hypogaea HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
arahy.Tifrunner.gnm1.ann1.IH7417 Arachis hypogaea HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Migut.C01380 Erythranthe guttata HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
HanXRQChr02g0051121 Helianthus annuus HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
HanXRQChr09g0269231 Helianthus annuus HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Hma1.2p1_0417F.1_g148930 Hydrangea macrophylla HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 91.7
Hma1.2p1_1001F.1_g246480 Hydrangea macrophylla HOM05D007913 ORTHO05D009599 2.2e-08 63.5 70 55.7
Lj8A621G19 Lonicera japonica HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Lj4g0024431 Lotus japonicus HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Manes.12G153700 Manihot esculenta HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Oeu028109.1 Olea europaea HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
Psat7g075960 Pisum sativum HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
SGA_v2.0_scaffold24G10648 Striga asiatica HOM05D001813 ORTHO05D004073 2.2e-08 63.5 36 88.9
CSS0044883 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 2.9e-08 63.2 36 88.9
Ciclev10018756m.g Citrus clementina HOM05D001813 ORTHO05D004073 2.9e-08 63.2 36 86.1
Ciclev10023926m.g Citrus clementina HOM05D001813 ORTHO05D004073 2.9e-08 63.2 36 86.1
Actinidia38635 Actinidia chinensis HOM05D001813 ORTHO05D015792 3.8e-08 62.8 34 91.2
ClCG08G001130 Citrullus lanatus HOM05D001813 ORTHO05D004073 3.8e-08 62.8 36 88.9
MELO3C022170.2 Cucumis melo HOM05D001813 ORTHO05D004073 3.8e-08 62.8 36 88.9
CsaV3_5G039900 Cucumis sativus L. HOM05D001813 ORTHO05D004073 3.8e-08 62.8 36 88.9
SalBow1G7856 Salvia bowleyana HOM05D001813 ORTHO05D004073 3.8e-08 62.8 36 83.3
SalBow6G6680 Salvia bowleyana HOM05D001813 ORTHO05D004073 3.8e-08 62.8 36 83.3
Actinidia17319 Actinidia chinensis HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
CANSAT25G1500 Cannabis sativa HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
CiPaw.03G014400 Carya illinoinensis HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
Duzib177G0714 Durio zibethinus HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
Glyma.05G151100 Glycine max HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
Glyma.08G107800 Glycine max HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 88.9
Sed0001278 Sechium edule HOM05D001813 ORTHO05D004073 5.0e-08 62.4 36 86.1
ATR0665G656 Amborella trichopoda HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
CiPaw.04G009200 Carya illinoinensis HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
AUR62005967 Chenopodium quinoa HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
AUR62028102 Chenopodium quinoa HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
DCAR_003713 Daucus carota HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
FvH4_2g00800 Fragaria vesca HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
FAN20G2120 Fragaria x ananassa HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
FAN24G2627 Fragaria x ananassa HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
FAN27G3012 Fragaria x ananassa HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
MD05G1003800 Malus domestica HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
Manes.18G116401 Manihot esculenta HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
Oeu023196.1 Olea europaea HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
Phvul.011G012000 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
Prupe.5G007500 Prunus persica HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
Rhsim03G0264300 Rhododendron simsii HOM05D001813 ORTHO05D004073 6.5e-08 62.0 57 66.7
Hund21072 Selenicereus undatus HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 86.1
Thecc.08G178600 Theobroma cacao HOM05D001813 ORTHO05D004073 6.5e-08 62.0 36 88.9
Ca_16425_v3 Cicer arietinum L. HOM05D001813 ORTHO05D004073 8.5e-08 61.6 42 76.2
Manes.02G201600 Manihot esculenta HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 83.3
PSO170G5669 Papaver somniferum HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 88.9
QL09p001828 Quercus lobata HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 86.1
QL11p001782 Quercus lobata HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 86.1
SalBow7G2902 Salvia bowleyana HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 86.1
Sc19g0000480 Simmondsia chinensis HOM05D001813 ORTHO05D004073 8.5e-08 61.6 36 86.1
Aa31LG9G16010 Aethionema arabicum HOM05D001813 ORTHO05D004073 1.1e-07 61.2 36 83.3
MSTRG.25497 Avicennia marina HOM05D001813 ORTHO05D004073 1.1e-07 61.2 36 83.3
Phvul.001G265600 Phaseolus vulgaris HOM05D001813 ORTHO05D004073 1.1e-07 61.2 36 86.1
Sed0008498 Sechium edule HOM05D001813 ORTHO05D004073 1.1e-07 61.2 36 83.3
THA.LOC104812709 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 1.1e-07 61.2 36 83.3
CSS0003534 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 1.4e-07 60.8 36 88.9
CSS0039369 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D004073 1.4e-07 60.8 36 88.9
RcHm_v2.0_Chr6g0251231 Rosa chinensis HOM05D001813 ORTHO05D004073 1.4e-07 60.8 36 86.1
VMungo0251G1069 Vigna mungo HOM05D001813 ORTHO05D004073 1.4e-07 60.8 33 90.9
Ah.07g204380 Amaranthus hybridus HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 88.9
Potri.013G099500 Populus trichocarpa HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 88.9
Potri.019G071700 Populus trichocarpa HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 88.9
Prupe.8G007000 Prunus persica HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 86.1
THA.LOC104812911 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 83.3
THA.LOC104813352 Tarenaya hassleriana HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 83.3
VMungo1383G2091 Vigna mungo HOM05D001813 ORTHO05D004073 1.9e-07 60.5 36 83.3
Atru.chr13.2521 Acer truncatum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Atru.chr13.2615 Acer truncatum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Aqoxy2G01446 Aquilegia oxysepala HOM05D001813 ORTHO05D018408 2.5e-07 60.1 36 86.1
Aqoxy3G00793 Aquilegia oxysepala HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 86.1
CAN.G83.2 Capsicum annuum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Glyma.18G002866 Glycine max HOM05D001813 ORTHO05D022754 2.5e-07 60.1 36 83.3
MD10G1004700 Malus domestica HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 86.1
Nitab4.5_0000213g0120 Nicotiana tabacum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Nitab4.5_0003723g0020 Nicotiana tabacum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Peaxi162Scf00078g00736 Petunia axillaris HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Solyc11g040390.2 Solanum lycopersicum HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
Sopen11g018430 Solanum pennellii HOM05D001813 ORTHO05D004073 2.5e-07 60.1 36 83.3
AT1G31230 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
BcaB07g32785 Brassica carinata HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
BcaC05g27153 Brassica carinata HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
A09p35010 Brassica napus HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
C05p30420 Brassica napus HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
BolC5t31779H Brassica oleracea HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
BraA09t39032Z Brassica rapa HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
Carub.0001s2963 Capsella rubella HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
CARHR030710 Cardamine hirsuta HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
Thhalv10006741m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
Lj6g0010107 Lotus japonicus HOM05D001813 ORTHO05D004073 3.2e-07 59.7 33 90.9
Sabra13G0085300 Salix brachista HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 86.1
Sabra19G0083600 Salix brachista HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 86.1
Sp1g27040 Schrenkiella parvula HOM05D001813 ORTHO05D004073 3.2e-07 59.7 36 80.6
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 5.5e-07 58.9 48 62.5
TAR376G0331 Trochodendron aralioides HOM05D001813 ORTHO05D004073 5.5e-07 58.9 36 83.3
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 7.2e-07 58.5 49 61.2
Eucgr.F02952 Eucalyptus grandis HOM05D001813 ORTHO05D004073 7.2e-07 58.5 36 86.1
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 7.2e-07 58.5 49 57.1
Medtr3g084500 Medicago truncatula HOM05D001813 ORTHO05D004073 7.2e-07 58.5 42 73.8
Nn8g39938 Nelumbo nucifera HOM05D001813 ORTHO05D004073 7.2e-07 58.5 36 86.1
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 7.2e-07 58.5 64 50.0
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 7.2e-07 58.5 43 67.4
SMO358G0576 Selaginella moellendorffii HOM05D001813 ORTHO05D004073 7.2e-07 58.5 36 77.8
Aa31LG6G2270 Aethionema arabicum HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
AL7G34320 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
AT4G19710 Arabidopsis thaliana HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
BcaC09g51372 Brassica carinata HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
BcaNung01751 Brassica carinata HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
A01p11690 Brassica napus HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
C01p13830 Brassica napus HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
BolC1t01351H Brassica oleracea HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
BraA01t01111Z Brassica rapa HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
Carub.0007s2144 Capsella rubella HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
CARHR226530 Cardamine hirsuta HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
Thhalv10024340m.g Eutrema salsugineum HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
PSO017G5299 Papaver somniferum HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 86.1
Sp7g18310 Schrenkiella parvula HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 80.6
unitig_37.g13078 Utricularia gibba HOM05D001813 ORTHO05D004073 9.4e-07 58.2 36 77.8
AL1G49250 Arabidopsis lyrata HOM05D001813 ORTHO05D004073 1.2e-06 57.8 36 77.8
MBI04_g30106_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 1.2e-06 57.8 37 64.9
CDE02G3059 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 1.6e-06 57.4 36 77.8
MBI04_g20663_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 1.6e-06 57.4 36 83.3
Nn2g12417 Nelumbo nucifera HOM05D001813 ORTHO05D004073 1.6e-06 57.4 36 80.6
SHI07493 Sapria himalayana HOM05D001813 ORTHO05D004073 1.6e-06 57.4 33 87.9
GSVIVG01036290001 Vitis vinifera HOM05D001813 ORTHO05D004073 1.6e-06 57.4 36 77.8
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 2.1e-06 57.0 66 47.0
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 2.7e-06 56.6 43 62.8
Rhsim01G0175900 Rhododendron simsii HOM05D001813 ORTHO05D026101 2.7e-06 56.6 34 82.4
TAR624G0594 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.7e-06 56.6 37 67.6
MBI01_g01228_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D004073 3.6e-06 56.2 36 80.6
Peaxi162Scf00818g00531 Petunia axillaris HOM05D001813 ORTHO05D004073 3.6e-06 56.2 37 75.7
vmacro06015 Vaccinium macrocarpon HOM05D001813 ORTHO05D004073 3.6e-06 56.2 36 80.6
Aa31LG2G15160 Aethionema arabicum HOM05D001813 ORTHO05D004073 4.7e-06 55.8 36 75.0
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 4.7e-06 55.8 49 61.2
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 4.7e-06 55.8 49 59.2
CDE04G0141 Ceratophyllum demersum HOM05D001813 ORTHO05D004073 4.7e-06 55.8 36 75.0
Nitab4.5_0002654g0030 Nicotiana tabacum HOM05D001813 ORTHO05D004073 4.7e-06 55.8 36 75.0
Nitab4.5_0010319g0010 Nicotiana tabacum HOM05D001813 ORTHO05D004073 4.7e-06 55.8 36 75.0
Actinidia18937 Actinidia chinensis HOM05D010627 ORTHO05D009599 7.9e-06 55.1 71 54.9
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 7.9e-06 55.1 44 61.4
SEGI_36113 Sequoiadendron giganteum HOM05D001813 ORTHO05D004073 7.9e-06 55.1 36 77.8


User provided reference genes

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