Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 8.9e-224 780.0 414 100.0
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 1.2e-151 540.4 419 73.7
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.5e-130 470.3 416 65.4
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 1.4e-112 410.6 419 58.9
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 3.5e-111 406.0 420 58.1
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 6.6e-110 401.7 359 64.9
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 1.2e-100 370.9 440 54.1
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 3.8e-97 359.4 418 55.7
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 1.4e-96 357.5 420 54.3
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.5e-93 346.7 345 60.6
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 3.4e-90 336.3 421 51.3
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 2.9e-89 333.2 418 51.2
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 1.9e-88 330.5 421 50.8
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 2.4e-88 330.1 422 50.2
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 5.4e-88 328.9 417 51.8
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 4.3e-85 319.3 418 51.0
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 4.8e-84 315.8 421 48.9
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 6.2e-84 315.5 420 49.5
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 1.4e-83 314.3 405 49.4
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 1.4e-83 314.3 420 49.5
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 3.1e-83 313.2 420 49.5
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 5.8e-82 308.9 420 49.0
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.4e-80 303.5 418 48.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.2e-79 301.2 401 49.6
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 1.3e-78 297.7 415 50.1
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 6.7e-78 295.4 420 47.9
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 1.5e-77 294.3 419 50.4
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.9e-77 293.9 418 49.5
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 2.5e-77 293.5 418 49.3
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 5.6e-77 292.4 418 49.3
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 7.4e-77 292.0 422 49.1
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 1.4e-75 287.7 407 47.9
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 9.0e-75 285.0 407 47.9
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.2e-74 284.6 431 48.7
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 1.0e-73 281.6 420 46.4
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 2.9e-73 280.0 419 46.8
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 2.9e-73 280.0 422 46.9
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 4.9e-73 279.3 415 46.5
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 1.9e-72 277.3 454 43.4
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 5.5e-72 275.8 414 48.3
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 2.7e-71 273.5 359 51.3
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.7e-71 273.5 418 45.9
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 1.0e-70 271.6 434 45.9
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 3.0e-70 270.0 424 47.2
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 5.1e-70 269.2 420 45.0
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 5.1e-70 269.2 419 46.5
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 1.9e-69 267.3 423 46.3
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 5.7e-69 265.8 423 46.3
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 7.4e-69 265.4 436 45.2
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 1.3e-68 264.6 416 45.9
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 2.8e-68 263.5 422 46.9
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 3.7e-68 263.1 420 44.5
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 4.8e-68 262.7 419 44.6
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 8.2e-68 261.9 422 45.7
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 1.1e-67 261.5 418 45.0
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 5.3e-67 259.2 416 44.2
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 1.2e-66 258.1 418 45.2
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 1.2e-66 258.1 415 44.8
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.0e-65 255.0 416 43.5
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 2.2e-65 253.8 408 45.1
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 2.9e-65 253.4 428 43.9
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.5e-65 251.9 316 52.5
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 3.2e-64 250.0 419 43.0
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 5.5e-64 249.2 406 44.3
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 1.6e-63 247.7 413 44.8
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 2.1e-63 247.3 420 43.8
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 2.1e-63 247.3 378 45.8
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 2.7e-63 246.9 417 45.6
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 5.1e-62 242.7 420 44.8
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.1e-61 241.5 346 49.4
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 9.7e-61 238.4 420 42.4
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.6e-60 237.7 318 50.9
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 1.1e-59 235.0 419 45.1
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.8e-59 234.2 318 50.9
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 5.3e-59 232.6 422 44.8
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 9.1e-59 231.9 348 48.3
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 2.6e-58 230.3 420 44.3
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 2.5e-56 223.8 425 43.5
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 3.2e-56 223.4 425 41.9
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 1.6e-55 221.1 333 47.7
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 2.1e-55 220.7 421 43.2
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 1.0e-54 218.4 430 41.2
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 1.4e-54 218.0 430 41.6
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 2.3e-54 217.2 345 46.1
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 8.8e-54 215.3 418 42.6
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 1.3e-52 211.5 353 43.9
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 1.1e-51 208.4 423 41.8
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 3.1e-51 206.8 425 41.2
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 6.9e-51 205.7 275 49.1
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 1.5e-50 204.5 423 41.4
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 1.5e-50 204.5 412 40.0
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 2.0e-50 204.1 316 44.6
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 5.9e-50 202.6 423 42.6
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 5.9e-50 202.6 423 42.6
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 1.3e-49 201.4 406 38.7
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 1.3e-49 201.4 416 39.9
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 5.0e-49 199.5 420 38.1
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 8.5e-49 198.7 424 40.6
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 1.1e-48 198.4 424 40.6
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 1.9e-48 197.6 423 40.7
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 7.9e-47 192.2 423 41.1
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 1.4e-46 191.4 424 40.8
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 2.3e-46 190.7 426 39.7
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 2.3e-46 190.7 385 44.2
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 1.1e-45 188.3 423 40.0
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 1.5e-45 188.0 426 38.3
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 4.4e-45 186.4 423 40.7
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 5.7e-45 186.0 451 37.5
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 2.2e-44 184.1 430 39.1
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 4.8e-44 183.0 429 38.7
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 1.8e-43 181.0 422 39.8
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 1.1e-40 171.8 185 56.8
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 1.5e-40 171.4 332 41.0
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 7.2e-40 169.1 425 37.9
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 2.7e-39 167.2 449 37.9
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 6.1e-39 166.0 183 57.4
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.0e-38 163.7 183 56.8
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 1.7e-36 157.9 416 39.7
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 1.1e-35 155.2 343 37.6
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 7.0e-35 152.5 314 40.8
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 7.7e-34 149.1 418 33.7
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 7.7e-34 149.1 421 35.2
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 1.3e-33 148.3 429 35.2
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 5.0e-33 146.4 372 39.5
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.1e-32 145.2 160 57.5
CDE06G1062 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 2.1e-31 141.0 284 40.5
MBI02_g11379_MAGBIO Magnolia biondii HOM05D004946 ORTHO05D006101 4.7e-31 139.8 191 49.7
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 3.7e-28 130.2 159 49.7
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 4.8e-28 129.8 182 51.1
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 9.1e-27 125.6 287 37.3
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 1.3e-20 105.1 343 32.9
SGA_v2.0_scaffold37G14831 Striga asiatica HOM05D004946 ORTHO05D006101 5.0e-17 93.2 365 32.1
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.6e-17 92.4 86 61.6
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 1.4e-14 85.1 103 50.5
Os05g0513300 Oryza sativa ssp. japonica HOM05D004946 ORTHO05D006101 3.0e-14 84.0 283 30.4
CANSAT80G2575 Cannabis sativa HOM05D004946 ORTHO05D006101 1.2e-13 82.0 128 43.0
BolC6t39834H Brassica oleracea HOM05D004946 ORTHO05D006101 7.0e-11 72.8 206 35.4
QL02p035395 Quercus lobata HOM05D004266 ORTHO05D005151 1.6e-10 71.6 454 27.8
Sabra02G0049600 Salix brachista HOM05D004266 ORTHO05D005151 1.6e-10 71.6 417 29.5
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 5.9e-10 69.7 86 50.0
TPR.G23156 Trifolium pratense HOM05D004266 ORTHO05D005151 5.9e-10 69.7 413 27.6
Cfa018249 Carpinus fangiana HOM05D004266 ORTHO05D005151 6.6e-09 66.2 434 26.3
arahy.Tifrunner.gnm1.ann1.BJW38K Arachis hypogaea HOM05D004266 ORTHO05D005151 8.6e-09 65.9 420 28.1
arahy.Tifrunner.gnm1.ann1.XP62BS Arachis hypogaea HOM05D004266 ORTHO05D005151 1.1e-08 65.5 424 28.5
Cc09_g05020 Coffea canephora HOM05D004266 ORTHO05D005151 3.3e-08 63.9 447 28.6
Dinv36591 Davidia involucrata HOM05D000943 ORTHO05D005151 4.3e-08 63.5 439 27.3
Manes.02G186700 Manihot esculenta HOM05D004266 ORTHO05D005151 5.6e-08 63.2 440 26.8
CSS0048022 Camellia sinensis var. sinensis HOM05D004266 ORTHO05D005151 4.7e-07 60.1 439 29.6
Pp3c14_13370 Physcomitrium patens HOM05D004266 ORTHO05D005151 1.4e-06 58.5 447 29.8
Potri.002G061200 Populus trichocarpa HOM05D004266 ORTHO05D005151 1.4e-06 58.5 434 27.6
Prupe.8G045900 Prunus persica HOM05D004266 ORTHO05D005151 4.0e-06 57.0 426 26.5
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 5.2e-06 56.6 82 43.9
Gorai.009G260200 Gossypium raimondii HOM05D004266 ORTHO05D005151 8.9e-06 55.8 414 28.0
MD10G1041800 Malus domestica HOM05D004266 ORTHO05D005151 8.9e-06 55.8 421 26.8


User provided reference genes

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