Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 2.7e-211 738.4 374 100.0
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 1.8e-82 310.5 270 64.4
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.2e-81 307.8 225 72.0
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 3.5e-78 296.2 201 75.6
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 6.0e-78 295.4 196 74.0
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.1e-75 287.0 206 70.4
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.0e-74 282.7 230 63.5
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.6e-73 280.0 230 63.5
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.6e-73 280.0 230 63.5
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 3.2e-71 273.1 205 66.8
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 2.1e-70 270.4 233 60.9
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 6.0e-70 268.9 224 63.4
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.0e-69 268.1 196 69.4
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.5e-68 264.2 239 60.3
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 2.8e-67 260.0 264 56.1
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 6.9e-66 255.4 243 58.4
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 9.0e-66 255.0 230 58.7
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 1.2e-65 254.6 232 60.8
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 2.0e-65 253.8 239 58.6
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 1.0e-64 251.5 204 62.3
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 4.9e-64 249.2 221 57.5
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 6.5e-64 248.8 239 57.7
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 1.1e-63 248.1 213 57.7
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.1e-63 248.1 233 58.4
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.1e-63 248.1 215 60.9
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 2.5e-63 246.9 213 57.3
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 3.2e-63 246.5 197 62.4
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 3.2e-63 246.5 204 62.3
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 4.2e-63 246.1 235 58.3
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 9.3e-63 245.0 265 52.8
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 1.6e-62 244.2 216 58.3
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 3.5e-62 243.0 234 56.4
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.3e-61 241.1 233 56.2
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 1.8e-61 240.7 198 63.6
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.8e-61 240.7 210 60.0
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.8e-61 240.7 222 55.0
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.0e-61 240.0 198 61.1
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.9e-61 239.6 216 57.9
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 6.7e-61 238.8 201 62.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 6.7e-61 238.8 279 48.0
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 8.7e-61 238.4 203 62.1
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.5e-60 237.7 223 56.1
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.5e-60 237.7 233 55.8
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.9e-60 237.3 199 62.3
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.9e-60 237.3 232 55.6
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.9e-60 237.3 217 54.4
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 9.7e-60 235.0 247 53.0
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.3e-59 234.6 241 52.3
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 1.3e-59 234.6 244 53.3
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 1.6e-59 234.2 213 58.7
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 6.3e-59 232.3 235 54.0
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.8e-58 230.7 226 54.0
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 2.4e-58 230.3 225 56.0
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 6.9e-58 228.8 216 57.9
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.5e-57 227.6 258 51.6
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 1.5e-57 227.6 231 52.8
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 2.6e-57 226.9 221 54.8
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 4.5e-57 226.1 227 52.0
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.9e-57 225.7 225 53.8
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 1.3e-56 224.6 234 50.4
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.3e-56 224.6 217 54.4
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.7e-56 224.2 232 52.6
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 1.4e-55 221.1 233 51.1
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.2e-55 219.9 238 50.0
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 4.2e-55 219.5 271 47.6
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 5.5e-55 219.2 221 50.2
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 1.6e-54 217.6 208 50.5
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 1.6e-54 217.6 208 50.5
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 1.6e-54 217.6 208 51.4
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 3.6e-54 216.5 185 56.8
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 4.6e-54 216.1 242 50.4
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.8e-53 214.2 208 51.0
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 2.3e-53 213.8 246 48.8
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 3.0e-53 213.4 216 50.9
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 3.9e-53 213.0 221 48.9
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 5.1e-53 212.6 221 48.9
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 6.7e-53 212.2 208 52.4
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 8.8e-53 211.8 221 50.2
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 1.5e-52 211.1 170 59.4
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 2.0e-52 210.7 221 49.3
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.0e-52 210.7 334 41.0
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 2.8e-51 206.8 221 48.0
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 5.3e-50 202.6 235 50.2
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 4.5e-49 199.5 215 51.2
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 1.2e-46 191.4 217 49.3
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 2.7e-46 190.3 240 46.2
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 5.7e-44 182.6 216 46.3
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 2.2e-43 180.6 196 46.4
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 1.4e-42 177.9 161 60.9
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.3e-40 171.4 204 45.6
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 1.3e-40 171.4 196 44.9
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.7e-40 171.0 196 45.4
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.5e-39 167.2 186 54.3
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 2.1e-38 164.1 199 48.7
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 2.3e-37 160.6 217 42.9
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 3.0e-37 160.2 155 51.0
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.7e-33 145.6 136 57.4
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 3.8e-32 143.3 169 48.5
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 4.2e-31 139.8 148 52.7
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 8.0e-30 135.6 163 47.2
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 1.8e-26 124.4 146 45.9
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 3.1e-26 123.6 142 48.6
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.1e-22 110.9 82 64.6
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 4.4e-20 103.2 189 34.4
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 9.8e-12 75.5 54 59.3
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 4.5e-09 66.6 142 33.8
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 7.8e-09 65.9 44 68.2
AL1G23580 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 2.8e-06 57.4 91 36.3


User provided reference genes

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