Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 6.2e-106 387.5 198 100.0
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 2.1e-69 266.2 218 68.8
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 4.0e-65 251.9 212 68.4
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 2.7e-53 212.6 209 62.2
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 2.7e-53 212.6 209 62.2
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 3.9e-52 208.8 117 83.8
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 6.7e-52 208.0 200 62.0
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 8.7e-52 207.6 190 61.6
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 5.7e-51 204.9 202 59.9
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 7.4e-51 204.5 182 60.4
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-50 203.8 178 63.5
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.3e-50 203.8 182 62.6
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.2e-50 203.0 182 62.6
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 2.2e-50 203.0 179 63.7
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 2.8e-50 202.6 157 66.9
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.8e-50 202.6 112 81.2
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.8e-50 202.6 200 61.5
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 2.8e-50 202.6 192 59.9
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 3.7e-50 202.2 161 62.7
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 6.3e-50 201.4 121 76.9
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 8.2e-50 201.1 116 77.6
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.1e-49 200.7 181 60.8
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.8e-49 199.9 208 57.7
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.4e-49 199.5 118 78.0
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 3.1e-49 199.1 119 76.5
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 3.1e-49 199.1 138 71.0
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 3.1e-49 199.1 193 59.6
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 4.1e-49 198.7 194 59.3
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 4.1e-49 198.7 130 75.4
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 5.3e-49 198.4 124 72.6
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 6.9e-49 198.0 133 72.9
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.9e-49 198.0 190 57.4
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 9.0e-49 197.6 115 79.1
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.2e-48 197.2 111 82.0
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 1.5e-48 196.8 174 63.2
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.0e-48 196.4 121 76.0
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 2.0e-48 196.4 121 73.6
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.0e-48 196.4 111 81.1
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 2.0e-48 196.4 116 77.6
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.0e-48 196.4 172 62.2
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 3.4e-48 195.7 175 60.0
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.4e-48 195.7 130 74.6
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 4.5e-48 195.3 176 61.4
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 5.9e-48 194.9 171 60.8
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 7.7e-48 194.5 187 59.4
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.3e-47 193.7 118 78.0
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.7e-47 193.4 111 79.3
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.7e-47 193.4 120 76.7
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 1.7e-47 193.4 171 60.8
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.9e-47 192.6 171 61.4
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 3.8e-47 192.2 118 75.4
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 5.0e-47 191.8 203 53.2
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 5.0e-47 191.8 111 82.9
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 6.5e-47 191.4 142 66.2
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 6.5e-47 191.4 118 74.6
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 6.5e-47 191.4 118 74.6
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 6.5e-47 191.4 168 61.3
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 6.5e-47 191.4 118 75.4
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 8.5e-47 191.0 118 76.3
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 8.5e-47 191.0 115 78.3
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 1.1e-46 190.7 174 60.3
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 1.9e-46 189.9 180 59.4
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.5e-46 189.5 116 74.1
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 2.5e-46 189.5 186 57.5
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 4.2e-46 188.7 118 75.4
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 5.5e-46 188.3 158 60.1
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 7.2e-46 188.0 179 57.5
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 7.2e-46 188.0 118 75.4
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 7.2e-46 188.0 161 60.2
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 9.4e-46 187.6 179 57.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 9.4e-46 187.6 179 57.0
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.4e-46 187.6 126 73.8
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 9.4e-46 187.6 108 80.6
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.2e-45 187.2 114 76.3
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.2e-45 187.2 139 67.6
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.2e-45 187.2 130 72.3
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 2.7e-45 186.0 156 60.9
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 2.7e-45 186.0 187 55.1
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 2.7e-45 186.0 112 75.9
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 3.6e-45 185.7 108 79.6
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 4.6e-45 185.3 115 73.9
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 6.1e-45 184.9 199 54.3
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.4e-44 183.7 144 61.8
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.8e-44 183.3 130 71.5
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.8e-44 183.3 200 53.0
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 3.0e-44 182.6 113 74.3
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 5.1e-44 181.8 187 54.0
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 8.8e-44 181.0 195 53.8
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 2.0e-43 179.9 156 60.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 9.7e-43 177.6 183 53.6
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.8e-42 176.0 191 53.9
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.0e-40 169.9 118 67.8
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 3.4e-40 169.1 174 52.9
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.3e-39 167.2 111 69.4
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.0e-36 157.5 143 57.3
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 3.0e-36 156.0 100 71.0
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 6.7e-36 154.8 136 55.1
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 2.6e-35 152.9 119 63.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.6e-35 152.9 119 63.0
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 6.3e-34 148.3 128 53.9
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.1e-33 147.5 132 53.0
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.8e-33 146.7 110 62.7
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.8e-33 146.7 105 62.9
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 3.1e-33 146.0 121 57.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 4.1e-33 145.6 105 61.9
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.0e-32 143.3 106 60.4
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 2.0e-32 143.3 111 59.5
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 2.6e-32 142.9 111 56.8
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 3.5e-32 142.5 111 56.8
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 4.5e-32 142.1 111 60.4
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 5.9e-32 141.7 103 61.2
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 7.7e-32 141.4 112 58.9
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 7.7e-32 141.4 109 57.8
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 1.0e-31 141.0 105 57.1
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.3e-31 140.6 134 50.0
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.2e-31 139.8 173 46.8
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 2.2e-31 139.8 105 60.0
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 6.5e-31 138.3 111 57.7
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 8.5e-31 137.9 112 58.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 8.5e-31 137.9 125 52.0
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.1e-30 137.5 116 56.9
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-30 137.5 130 55.4
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.1e-30 137.5 111 55.0
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.5e-30 137.1 110 57.3
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 3.2e-30 136.0 177 42.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 4.2e-30 135.6 134 50.7
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.2e-30 135.6 126 51.6
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 4.2e-30 135.6 183 44.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 7.2e-30 134.8 127 50.4
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 7.2e-30 134.8 113 54.9
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 9.4e-30 134.4 111 55.0
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 9.4e-30 134.4 111 55.0
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.2e-29 134.0 125 51.2
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.6e-29 133.7 110 54.5
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.6e-29 133.7 126 54.0
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.6e-29 133.7 112 56.2
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.1e-29 133.3 111 55.0
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 6.1e-29 131.7 98 62.2
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.0e-28 131.0 111 54.1
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 2.3e-28 129.8 111 48.6
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 4.0e-28 129.0 103 55.3
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 8.8e-28 127.9 113 50.4
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 1.1e-27 127.5 109 56.9
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.6e-27 126.3 112 50.0
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.2e-26 123.2 94 60.6
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 3.7e-26 122.5 62 85.5
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 4.8e-26 122.1 95 57.9
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 4.8e-26 122.1 130 46.9
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 1.8e-25 120.2 88 61.4
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 4.1e-25 119.0 129 45.0
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 5.3e-25 118.6 59 89.8
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 7.0e-25 118.2 130 42.3
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.2e-24 117.5 143 42.7
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 3.5e-24 115.9 144 43.8
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 4.5e-24 115.5 102 55.9
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.0e-23 114.4 106 50.0
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 1.7e-23 113.6 121 45.5
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 3.2e-22 109.4 215 39.5
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.6e-21 107.1 63 73.0
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 3.6e-21 105.9 199 37.7
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 4.7e-21 105.5 199 37.7
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.4e-20 104.0 207 32.9
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 5.2e-20 102.1 57 75.4
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.7e-18 97.1 91 49.5
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 6.3e-18 95.1 230 29.6
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 1.1e-17 94.4 112 42.9
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 3.1e-17 92.8 185 38.9
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 5.0e-15 85.5 65 61.5
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 5.2e-12 75.5 95 41.1
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.3e-10 70.9 75 48.0
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 3.1e-09 66.2 47 59.6
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 4.1e-09 65.9 68 45.6
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 1.2e-08 64.3 47 61.7
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 7.7e-08 61.6 139 30.9
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 5.0e-07 58.9 47 48.9
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 5.0e-07 58.9 47 51.1
MD13G1087300 Malus domestica HOM05D003884 ORTHO05D004482 8.6e-07 58.2 47 48.9
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 3.3e-06 56.2 43 58.1
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 4.3e-06 55.8 47 44.7
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 9.5e-06 54.7 127 33.9


User provided reference genes

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