Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 0.0e+00 1552.0 1204 100.0
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 0.0e+00 1102.0 1195 74.7
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-233 814.3 1254 57.3
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.7e-227 793.9 1253 59.8
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.6e-196 691.0 1372 50.8
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 7.1e-181 639.0 1323 53.9
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.2e-173 613.2 1443 47.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 2.0e-170 604.4 1389 41.5
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 4.7e-164 583.2 1388 49.8
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.8e-163 581.3 1110 42.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-160 571.6 1337 44.8
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 1.8e-160 571.2 1387 47.4
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.4e-160 570.9 1382 45.9
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-159 567.8 1233 46.6
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 7.7e-159 565.8 1337 44.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.0e-158 563.1 1364 50.5
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 2.1e-156 557.8 1306 47.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 3.6e-156 557.0 1390 51.5
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 3.0e-155 553.9 1335 44.7
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 2.6e-154 550.8 1339 47.9
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 7.4e-154 549.3 1334 47.3
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 9.7e-154 548.9 1289 44.1
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.6e-151 540.8 1387 47.3
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 3.8e-150 537.0 1390 46.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 9.4e-149 532.3 1331 43.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 1.2e-148 531.9 1250 41.2
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.3e-145 521.9 1381 42.4
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 7.7e-143 512.7 1814 34.6
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 8.5e-142 509.2 1384 42.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 9.4e-141 505.8 1393 46.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.6e-140 503.8 1329 42.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.7e-140 503.4 1327 44.5
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.8e-139 501.5 1384 44.3
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 4.9e-137 493.4 1325 42.1
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-136 491.9 1378 45.4
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.2e-135 488.8 1375 45.5
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.5e-135 486.9 1572 39.5
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.0e-130 471.5 1460 40.1
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 2.9e-129 467.6 1325 40.7
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.4e-128 465.3 1344 41.6
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.7e-126 458.4 1378 44.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.7e-126 458.4 1326 38.3
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.9e-126 457.6 1391 43.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 6.6e-126 456.4 1182 40.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.1e-125 455.7 1384 43.4
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.1e-125 455.7 1375 44.7
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.1e-125 455.7 1356 40.1
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.3e-125 453.8 1307 40.2
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.4e-123 448.7 1378 44.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.8e-123 448.4 1524 38.6
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.3e-123 448.0 1386 46.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 5.4e-120 436.8 1373 46.9
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.4e-120 436.8 1573 35.5
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.2e-119 435.6 1386 46.8
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.0e-118 431.0 1380 44.1
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.9e-117 428.3 1386 46.3
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 9.5e-117 426.0 1026 44.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.8e-116 424.5 1391 43.4
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.8e-116 424.5 1391 43.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 2.3e-115 421.4 1519 40.7
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.3e-113 415.6 1338 44.5
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.4e-112 410.2 1349 45.9
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.6e-111 408.7 1337 43.5
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.1e-111 408.3 1376 45.3
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 3.6e-108 397.5 1391 44.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 3.6e-108 397.5 945 54.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.2e-105 388.3 1363 45.8
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.7e-105 387.5 1349 44.8
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 8.4e-105 386.3 1349 45.3
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.1e-104 384.0 1286 38.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.7e-103 381.3 1377 41.2
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 6.8e-99 366.7 1327 41.5
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 4.6e-95 354.0 1176 42.4
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 6.0e-95 353.6 1522 34.2
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.9e-93 348.6 327 64.8
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.8e-92 344.0 1383 34.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.4e-91 341.7 1372 39.4
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.0e-90 338.6 379 58.0
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.7e-89 335.5 1110 38.0
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.4e-88 331.6 1098 35.6
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 3.3e-85 321.2 1605 30.7
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 3.6e-84 317.8 1336 36.3
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.1e-80 306.2 1350 35.9
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 6.0e-79 300.4 1310 39.2
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 8.7e-78 296.6 371 50.4
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.5e-77 295.0 1384 38.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.2e-74 286.2 1161 29.9
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.6e-68 265.8 1041 41.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.5e-65 253.8 1288 37.7
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 3.0e-62 245.0 1382 37.6
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 5.1e-62 244.2 1334 35.5
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.0e-57 229.9 1393 35.9
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 7.9e-55 220.3 833 42.6
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 4.3e-53 214.5 1297 39.5
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.5e-48 198.7 1308 30.5
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 2.7e-47 195.3 1294 32.0
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.3e-41 176.4 246 46.3
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 3.8e-41 174.9 453 34.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.5e-40 172.2 287 40.4
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.8e-38 166.0 327 46.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.2e-38 164.5 517 36.0
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.3e-37 161.8 464 31.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 1.7e-36 159.5 1166 31.4
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.2e-36 159.1 458 35.6
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.7e-36 158.3 451 33.7
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 5.3e-35 154.5 531 30.5
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 7.0e-35 154.1 248 44.0
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.6e-34 152.9 781 34.2
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.0e-33 150.2 308 49.0
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 3.8e-33 148.3 626 29.4
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.2e-30 137.9 168 58.3
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.3e-28 133.3 425 36.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.2e-28 132.5 229 41.5
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.0e-25 123.6 1344 29.8
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 3.8e-25 121.7 415 30.6
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 8.5e-25 120.6 362 29.6
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.5e-24 119.0 180 48.3
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.2e-24 118.6 636 28.8
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 7.2e-24 117.5 361 29.1
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 9.4e-24 117.1 1113 27.4
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.4e-24 117.1 182 47.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 9.4e-24 117.1 1267 28.8
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.1e-23 114.4 241 51.0
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-22 112.1 310 43.9
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.0e-22 111.7 175 46.3
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.5e-21 109.8 283 34.6
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.0e-21 109.4 572 29.0
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.6e-21 109.0 177 49.2
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 9.8e-21 107.1 307 42.0
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.3e-20 106.7 180 46.1
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.2e-20 105.9 478 26.8
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 2.8e-20 105.5 272 39.0
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 6.3e-20 104.4 1249 32.8
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.2e-18 100.1 499 28.3
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.7e-18 99.0 306 43.8
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 5.9e-18 97.8 180 45.6
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.7e-18 97.4 453 27.2
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-17 96.7 174 46.0
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-14 86.7 122 54.1
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.8e-14 86.3 96 53.1
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.8e-14 86.3 96 53.1
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.0e-14 85.5 840 46.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 8.9e-14 84.0 177 40.1
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 2.2e-12 79.3 97 57.7
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 2.2e-12 79.3 323 39.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.2e-11 75.5 1482 36.0
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.6e-10 73.2 470 34.5
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 2.7e-10 72.4 48 83.3
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 7.8e-10 70.9 576 31.4
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 3.9e-09 68.6 113 42.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 1.6e-07 63.2 52 61.5
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 2.8e-07 62.4 124 46.0
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.8e-07 62.4 266 31.2
CDE06G0101 Ceratophyllum demersum HOM05D042561 ORTHO05D004346 2.8e-07 62.4 111 39.6
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.8e-07 62.4 175 32.6
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.8e-07 62.4 175 32.6
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 8.0e-07 60.8 318 28.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 8.0e-07 60.8 592 24.0
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.0e-07 60.8 175 32.0
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.0e-06 60.5 1374 36.2
arahy.Tifrunner.gnm1.ann1.7R6RP5 Arachis hypogaea HOM05D003806 ORTHO05D004346 3.1e-06 58.9 84 50.0


User provided reference genes

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