Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 0.0e+00 1500.3 763 100.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 7.5e-285 983.8 689 74.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.4e-283 978.8 689 74.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.8e-278 962.6 689 73.1
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.0e-253 879.4 691 66.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.0e-253 879.4 691 67.3
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.1e-251 870.9 686 67.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.0e-249 865.5 704 65.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.6e-247 858.6 688 66.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.8e-247 858.2 691 65.4
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.4e-246 856.7 698 65.0
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.2e-245 853.6 693 65.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.5e-245 853.2 691 65.3
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.9e-244 849.0 693 65.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.1e-243 847.0 694 65.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.4e-243 846.7 694 64.1
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 4.2e-243 845.1 691 64.5
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 7.1e-243 844.3 692 65.9
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.3e-243 844.0 691 66.1
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.6e-242 843.2 695 64.9
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.7e-242 842.4 691 65.8
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.7e-242 842.4 691 65.8
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.5e-242 842.0 689 64.7
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.6e-242 841.6 694 64.1
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.7e-241 839.7 691 64.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.3e-241 839.3 691 65.0
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.0e-241 839.0 695 64.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.5e-240 836.6 700 63.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-240 836.6 689 64.4
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-240 836.3 691 63.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.5e-240 835.9 690 62.9
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.3e-239 833.6 690 63.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.1e-238 828.9 694 64.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.0e-238 828.6 689 62.8
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 5.3e-238 828.2 689 63.1
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.2e-237 827.0 691 63.8
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.5e-237 826.6 694 62.5
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.5e-237 826.6 693 62.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.0e-237 826.2 691 64.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.0e-237 826.2 690 63.2
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 3.4e-237 825.5 691 64.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-236 823.5 689 62.8
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.2e-236 822.8 694 62.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.9e-236 821.6 682 63.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.1e-235 820.5 689 62.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.5e-234 815.5 689 62.7
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 6.0e-234 814.7 688 62.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 7.9e-234 814.3 710 61.5
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.8e-233 813.1 693 62.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 8.7e-233 810.8 690 62.0
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.5e-232 809.3 690 61.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.8e-231 805.8 690 61.6
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.8e-231 805.8 690 61.7
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 4.8e-231 805.1 690 61.7
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.1e-230 802.4 689 61.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.6e-229 799.3 689 63.1
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 8.4e-228 794.3 681 61.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.2e-227 792.0 761 61.9
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-226 790.4 688 60.6
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.0e-225 787.3 689 59.1
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.0e-225 787.3 687 61.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.3e-225 786.9 688 59.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 5.7e-224 781.6 685 61.0
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 5.7e-224 781.6 681 61.8
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.6e-223 780.0 689 59.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.8e-223 778.5 647 63.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 6.2e-223 778.1 822 54.9
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 5.3e-222 775.0 688 59.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.5e-221 773.5 641 62.9
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 5.8e-221 771.5 689 59.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.0e-220 770.8 690 59.6
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 5.0e-220 768.5 689 58.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.4e-219 766.9 689 58.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 3.2e-219 765.8 689 58.5
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.2e-219 765.8 689 58.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 7.1e-219 764.6 689 58.5
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.1e-218 763.1 690 58.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.9e-217 758.8 643 62.5
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.3e-216 755.7 532 72.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.4e-216 754.6 690 58.1
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.3e-215 753.8 673 60.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.7e-215 752.3 688 59.4
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 9.0e-214 747.7 652 62.7
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.9e-213 745.0 697 57.7
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.7e-212 743.4 693 57.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.8e-209 733.4 496 78.4
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 6.7e-209 731.5 533 70.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.1e-202 709.9 692 55.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 8.5e-196 688.0 501 70.7
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.2e-195 685.6 695 55.3
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.8e-193 680.2 688 54.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 8.0e-186 654.8 704 51.7
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.7e-175 619.4 689 52.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.3e-167 594.3 527 60.3
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 9.2e-158 561.6 359 78.6
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.3e-156 557.8 755 43.3
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.2e-154 548.9 502 56.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.2e-151 540.4 394 70.3
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-149 533.1 384 69.3
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 2.4e-129 467.2 439 59.5
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.4e-127 458.8 256 89.8
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 5.8e-120 436.0 437 57.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-119 434.1 440 55.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.9e-116 423.3 395 58.5
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.2e-110 403.7 257 78.2
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.7e-109 400.6 257 76.3
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 5.0e-103 379.8 398 54.8
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 3.4e-96 357.1 243 73.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.4e-94 351.7 714 35.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.9e-92 343.6 231 74.0
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 6.8e-68 263.1 255 55.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.6e-67 261.2 714 29.4
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-64 250.8 220 61.4
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-61 241.1 215 60.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.1e-57 227.3 159 72.3
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 3.2e-49 201.1 157 64.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.4e-44 185.7 111 81.1
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-44 184.5 111 82.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-43 182.6 109 81.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 9.8e-43 179.5 110 76.4
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-42 178.3 111 78.4
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 9.2e-41 172.9 109 78.0
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 4.7e-37 160.6 106 70.8
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 3.4e-35 154.5 137 65.0
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.9e-33 148.7 134 64.2
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-33 148.7 129 58.9
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-33 147.5 93 76.3
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.1e-29 133.3 82 75.6
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-28 132.5 129 55.8
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-27 129.4 82 75.6
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 5.4e-25 120.6 516 24.4
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-25 120.2 69 84.1
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.7e-23 115.5 122 50.8
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 3.0e-23 114.8 113 51.3
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-22 109.8 72 69.4
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.7e-21 107.5 83 60.2
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-19 102.8 65 76.9
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-17 95.5 65 66.2
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.1e-15 87.4 145 41.4
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.5e-14 85.9 60 78.3
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 1.5e-14 85.9 55 76.4
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.3e-10 72.8 41 82.9
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-10 72.0 41 78.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-09 68.2 40 75.0
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.5e-08 64.7 47 72.3
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 6.0e-08 63.9 41 65.9
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 1.3e-07 62.8 46 69.6
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 2.5e-06 58.5 142 26.1


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