Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 0.0e+00 1548.5 777 100.0
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1178.7 761 77.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 0.0e+00 1086.2 760 70.4
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.4e-307 1059.3 810 65.9
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.7e-298 1028.5 762 66.9
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.3e-295 1019.6 1130 53.8
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 9.3e-291 1003.4 760 66.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.6e-290 1002.7 763 65.5
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 2.1e-287 992.3 763 64.1
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.6e-285 983.8 763 64.0
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.9e-281 971.5 763 63.4
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 4.1e-278 961.4 760 63.4
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 6.9e-278 960.7 762 63.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 9.4e-275 950.3 763 64.0
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 2.3e-273 945.7 761 62.0
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.3e-273 945.7 763 62.4
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.3e-272 941.4 759 62.3
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 4.8e-271 937.9 758 63.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.1e-270 936.8 764 62.6
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 4.5e-269 931.4 763 62.6
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.7e-268 929.5 768 62.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 5.0e-268 927.9 763 62.0
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 6.5e-268 927.5 764 61.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-267 926.8 757 64.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.4e-267 926.4 758 61.2
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.5e-267 925.6 762 62.7
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.2e-266 923.3 758 62.5
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 2.7e-266 922.2 797 61.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 4.7e-266 921.4 771 61.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.7e-266 921.4 758 62.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 4.7e-266 921.4 775 61.5
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-262 909.8 773 60.8
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 4.1e-262 908.3 759 61.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.2e-260 902.5 764 60.6
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 3.8e-260 901.7 758 59.9
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.0e-257 893.6 762 59.3
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.3e-256 888.6 761 59.1
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.4e-254 883.2 749 59.3
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.4e-254 882.5 787 58.1
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.4e-254 882.5 794 58.8
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 4.1e-254 881.7 762 59.1
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.3e-254 881.3 759 58.4
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 7.7e-253 877.5 759 58.2
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.3e-252 876.7 785 57.7
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-252 876.3 759 58.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 1.7e-252 876.3 763 59.0
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.8e-252 875.2 764 59.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.5e-252 874.4 759 58.0
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.5e-251 873.2 835 55.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.5e-251 871.3 761 58.9
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 3.6e-250 868.6 773 60.3
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 6.1e-250 867.8 764 58.9
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 1.4e-246 856.7 762 57.5
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 5.3e-246 854.7 764 58.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 1.2e-245 853.6 757 58.5
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 2.7e-245 852.4 763 57.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.5e-245 852.0 760 57.6
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 5.0e-244 848.2 759 58.1
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.2e-243 845.5 764 57.9
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.2e-242 843.6 762 57.1
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 4.7e-242 841.6 767 57.5
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.8e-241 839.7 759 56.8
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.7e-239 833.2 761 56.9
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.7e-239 832.0 780 56.2
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.4e-238 830.1 762 57.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 7.5e-232 807.7 758 58.0
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.5e-227 792.7 744 54.8
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.7e-223 780.0 762 53.4
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 4.9e-223 778.5 733 57.2
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 6.4e-223 778.1 765 54.4
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.8e-217 760.0 763 53.3
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 9.8e-216 754.2 762 52.2
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.8e-216 754.2 760 51.3
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 2.9e-215 752.7 777 50.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.4e-215 751.5 708 56.5
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.9e-212 742.3 753 50.9
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 6.2e-210 734.9 772 52.6
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 2.4e-206 723.0 767 48.6
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.7e-205 719.5 772 51.4
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.5e-205 719.2 673 56.9
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.5e-205 719.2 772 51.6
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 2.5e-203 713.0 639 59.3
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.3e-203 711.4 759 49.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.9e-199 698.7 767 50.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.6e-194 683.7 771 46.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.9e-191 672.9 757 49.9
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.4e-191 671.8 762 48.3
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 6.9e-185 651.7 722 47.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 3.4e-184 649.4 761 47.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 3.4e-184 649.4 761 47.0
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 2.2e-183 646.7 772 47.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 6.4e-183 645.2 762 47.0
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.2e-182 642.9 761 46.5
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-182 642.5 761 46.5
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.2e-182 642.5 761 46.4
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 3.5e-181 639.4 762 47.6
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 6.0e-181 638.6 463 67.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 7.9e-181 638.3 766 46.2
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.0e-180 637.9 760 47.1
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.0e-180 636.3 762 46.2
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 5.1e-180 635.6 763 46.8
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 8.7e-180 634.8 761 45.2
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 1.9e-179 633.6 1259 34.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.8e-177 627.1 761 46.5
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.9e-175 619.0 761 44.7
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 8.7e-172 608.2 524 60.9
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.8e-170 603.2 778 43.8
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.8e-167 592.8 762 44.4
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.3e-166 588.2 410 71.2
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 6.7e-164 582.0 782 43.6
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.1e-161 572.8 580 55.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 6.5e-159 565.5 633 48.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.1e-157 560.5 774 42.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.2e-142 509.6 755 40.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.9e-134 484.2 589 47.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.2e-128 464.9 323 70.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.5e-128 463.0 334 68.0
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 9.2e-113 412.1 303 64.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.0e-111 406.4 435 51.7
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 9.5e-110 402.1 312 63.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 6.2e-109 399.4 363 56.2
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.2e-104 385.2 731 35.3
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 5.6e-102 376.3 356 55.3
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.8e-100 369.4 264 70.8
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 2.6e-99 367.5 1044 26.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 9.8e-99 365.5 699 34.8
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 2.2e-98 364.4 398 48.2
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.9e-89 334.7 633 36.0
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.3e-86 323.9 271 60.9
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 4.3e-86 323.6 299 51.8
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.6e-86 323.2 396 44.9
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.3e-79 302.0 256 59.8
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 7.9e-72 276.2 196 66.8
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.5e-70 271.2 388 40.2
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.6e-69 267.3 345 44.6
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.9e-66 256.9 274 49.6
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.2e-65 253.8 496 34.3
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 1.2e-64 252.3 288 46.2
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.4e-60 238.8 178 64.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 3.1e-60 237.7 213 55.9
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 6.5e-58 229.9 336 45.8
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 6.1e-48 196.8 164 57.3
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 3.3e-46 191.0 160 61.2
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 4.3e-46 190.7 146 65.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 9.7e-46 189.5 139 66.2
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 2.6e-43 181.4 292 36.0
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 5.9e-43 180.3 260 39.2
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-38 166.0 240 39.6
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-38 166.0 160 53.8
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 8.2e-37 159.8 129 62.0
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.5e-35 155.6 80 92.5
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.9e-35 153.7 120 60.8
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 4.2e-33 147.5 101 69.3
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.2e-29 135.2 90 67.8
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 6.3e-29 133.7 151 49.7
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.8e-28 132.1 81 76.5
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 2.4e-28 131.7 89 70.8
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.0e-27 128.6 213 34.3
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 1.3e-26 125.9 129 49.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.7e-26 125.6 84 67.9
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 3.0e-23 114.8 86 61.6
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.8e-20 105.5 130 43.1
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.8e-20 105.5 85 56.5
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 2.2e-18 98.6 62 71.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-18 97.8 101 52.5
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 4.2e-17 94.4 62 62.9
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.6e-16 92.4 92 48.9
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.6e-16 92.4 103 44.7
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 4.0e-15 87.8 71 64.8
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.5e-14 85.9 59 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.0e-14 85.5 96 42.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.8e-13 81.6 59 57.6
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.7e-13 81.3 94 42.6
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 1.0e-10 73.2 84 48.8
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 1.0e-10 73.2 48 70.8
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 1.1e-09 69.7 96 43.8
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.1e-09 69.7 779 20.2
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.6e-08 64.7 50 66.0
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 6.1e-08 63.9 68 54.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 5.7e-06 57.4 45 62.2


User provided reference genes

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