Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0183900 Rhododendron simsii HOM05D002008 ORTHO05D002054 9.1e-40 166.4 81 100.0
Rhsim11G0184000 Rhododendron simsii HOM05D002008 ORTHO05D002054 1.0e-14 83.2 40 95.0
vmacro02050 Vaccinium macrocarpon HOM05D002008 ORTHO05D002054 2.1e-12 75.5 39 89.7
FAN15G2816 Fragaria x ananassa HOM05D002008 ORTHO05D002054 2.8e-12 75.1 47 72.3
FvH4_2g10540 Fragaria vesca HOM05D002008 ORTHO05D002054 3.6e-12 74.7 47 72.3
FAN24G0842 Fragaria x ananassa HOM05D002008 ORTHO05D002054 3.6e-12 74.7 47 72.3
FAN27G0482 Fragaria x ananassa HOM05D002008 ORTHO05D002054 3.6e-12 74.7 47 72.3
Sabra09G0095900 Salix brachista HOM05D002008 ORTHO05D002054 1.1e-11 73.2 43 79.1
Lj4g0019791 Lotus japonicus HOM05D002008 ORTHO05D002054 1.4e-11 72.8 39 82.1
Medtr8g105250 Medicago truncatula HOM05D002008 ORTHO05D002054 1.4e-11 72.8 43 76.7
Dinv41998 Davidia involucrata HOM05D002008 ORTHO05D002054 1.8e-11 72.4 39 82.1
FAN20G2463 Fragaria x ananassa HOM05D002008 ORTHO05D002054 1.8e-11 72.4 47 70.2
Lalb_Chr05g0222221 Lupinus albus HOM05D002008 ORTHO05D002054 1.8e-11 72.4 39 82.1
TAR628G0127 Trochodendron aralioides HOM05D002008 ORTHO05D002054 1.8e-11 72.4 41 78.0
GSVIVG01024168001 Vitis vinifera HOM05D002008 ORTHO05D002054 1.8e-11 72.4 51 66.7
arahy.Tifrunner.gnm1.ann1.MT58QN Arachis hypogaea HOM05D002008 ORTHO05D002054 2.3e-11 72.0 41 78.0
Psat7g008080 Pisum sativum HOM05D002008 ORTHO05D002054 2.3e-11 72.0 39 82.1
TWI79G0712 Tripterygium wilfordii HOM05D002008 ORTHO05D002054 2.3e-11 72.0 45 71.1
CSS0024848 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 4.0e-11 71.2 40 85.0
CSS0025564 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 4.0e-11 71.2 40 85.0
CARHR112140 Cardamine hirsuta HOM05D002008 ORTHO05D002054 6.8e-11 70.5 39 79.5
MD05G1055400 Malus domestica HOM05D002008 ORTHO05D002054 6.8e-11 70.5 51 64.7
Prupe.8G083000 Prunus persica HOM05D002008 ORTHO05D002054 6.8e-11 70.5 47 68.1
arahy.Tifrunner.gnm1.ann1.P0LCTU Arachis hypogaea HOM05D002008 ORTHO05D002054 8.9e-11 70.1 41 75.6
Glyma.08G045500 Glycine max HOM05D002008 ORTHO05D002054 8.9e-11 70.1 39 79.5
Potri.009G124900 Populus trichocarpa HOM05D002008 ORTHO05D002054 8.9e-11 70.1 35 91.4
TAR376G1032 Trochodendron aralioides HOM05D002008 ORTHO05D002054 8.9e-11 70.1 41 75.6
Glyma.05G238500 Glycine max HOM05D002008 ORTHO05D002054 1.5e-10 69.3 38 78.9
Thecc.02G074700 Theobroma cacao HOM05D002008 ORTHO05D002054 1.5e-10 69.3 45 71.1
Hma1.2p1_0032F.1_g020080 Hydrangea macrophylla HOM05D002008 ORTHO05D002054 2.0e-10 68.9 41 75.6
Lalb_Chr16g0387551 Lupinus albus HOM05D002008 ORTHO05D002054 2.0e-10 68.9 39 79.5
CANSAT11G0479 Cannabis sativa HOM05D002008 ORTHO05D002054 2.6e-10 68.6 39 82.1
RcHm_v2.0_Chr6g0268171 Rosa chinensis HOM05D002008 ORTHO05D002054 3.4e-10 68.2 47 68.1
TWI75G0289 Tripterygium wilfordii HOM05D002008 ORTHO05D002054 3.4e-10 68.2 51 62.7
COL.COLO4_26049 Corchorus olitorius HOM05D002008 ORTHO05D002054 4.4e-10 67.8 43 76.7
Haze_02236 Corylus avellana HOM05D002008 ORTHO05D002054 4.4e-10 67.8 41 75.6
Peaxi162Scf00684g00122 Petunia axillaris HOM05D002008 ORTHO05D002054 4.4e-10 67.8 39 79.5
Carub.0004s0031 Capsella rubella HOM05D002008 ORTHO05D002054 5.8e-10 67.4 39 76.9
Gohir.D04G165800 Gossypium hirsutum HOM05D002008 ORTHO05D002054 5.8e-10 67.4 45 71.1
Actinidia20472 Actinidia chinensis HOM05D002948 ORTHO05D003577 7.5e-10 67.0 40 80.0
Hma1.2p1_0321F.1_g124270 Hydrangea macrophylla HOM05D002008 ORTHO05D002054 7.5e-10 67.0 39 76.9
Duzib132G1117 Durio zibethinus HOM05D002008 ORTHO05D002054 9.9e-10 66.6 45 68.9
TPR.G13132 Trifolium pratense HOM05D002008 ORTHO05D002054 9.9e-10 66.6 40 75.0
VMungo0251G1513 Vigna mungo HOM05D002008 ORTHO05D002054 9.9e-10 66.6 40 77.5
BcaC07g41160 Brassica carinata HOM05D002008 ORTHO05D002054 1.3e-09 66.2 35 82.9
C08p41680 Brassica napus HOM05D002008 ORTHO05D002054 1.3e-09 66.2 35 82.9
BolC8t51731H Brassica oleracea HOM05D002008 ORTHO05D002054 1.3e-09 66.2 35 82.9
CSS0013045 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 1.3e-09 66.2 41 73.2
Lj9A383G60 Lonicera japonica HOM05D002008 ORTHO05D002054 1.3e-09 66.2 40 77.5
Potri.004G163200 Populus trichocarpa HOM05D002008 ORTHO05D002054 1.3e-09 66.2 43 74.4
Ca_17258_v3 Cicer arietinum L. HOM05D002008 ORTHO05D002054 1.7e-09 65.9 41 75.6
Ca_17280_v3 Cicer arietinum L. HOM05D002008 ORTHO05D002054 1.7e-09 65.9 41 75.6
Dinv23452 Davidia involucrata HOM05D002008 ORTHO05D002054 1.7e-09 65.9 35 82.9
Lj5A189T54 Lonicera japonica HOM05D002008 ORTHO05D002054 2.2e-09 65.5 44 75.0
MSTRG.20038 Avicennia marina HOM05D002008 ORTHO05D002054 2.9e-09 65.1 51 64.7
A04p16050 Brassica napus HOM05D002008 ORTHO05D002054 2.9e-09 65.1 42 69.0
A09p58340 Brassica napus HOM05D002008 ORTHO05D002054 2.9e-09 65.1 34 82.4
DCAR_028945 Daucus carota HOM05D002008 ORTHO05D002054 2.9e-09 65.1 54 63.0
Thhalv10000246m.g Eutrema salsugineum HOM05D002008 ORTHO05D002054 2.9e-09 65.1 37 78.4
Gorai.012G154200 Gossypium raimondii HOM05D002008 ORTHO05D002054 2.9e-09 65.1 45 68.9
Duzib248G1510 Durio zibethinus HOM05D002008 ORTHO05D002054 3.7e-09 64.7 45 68.9
MD10G1062700 Malus domestica HOM05D002008 ORTHO05D002054 3.7e-09 64.7 42 69.0
Sp4g00460 Schrenkiella parvula HOM05D002008 ORTHO05D002054 3.7e-09 64.7 37 78.4
AL4G10410 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 4.9e-09 64.3 39 74.4
AT2G21270 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 4.9e-09 64.3 39 74.4
Cc02_g16870 Coffea canephora HOM05D002008 ORTHO05D002054 4.9e-09 64.3 40 70.0
Nitab4.5_0001154g0080 Nicotiana tabacum HOM05D002008 ORTHO05D002054 4.9e-09 64.3 39 74.4
Nitab4.5_0001370g0010 Nicotiana tabacum HOM05D002008 ORTHO05D002054 4.9e-09 64.3 39 74.4
CSS0036858 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 6.4e-09 63.9 41 75.6
Aa31LG7G15220 Aethionema arabicum HOM05D002008 ORTHO05D002054 8.3e-09 63.5 40 70.0
Aqoxy1G00118 Aquilegia oxysepala HOM05D002008 ORTHO05D002054 8.3e-09 63.5 40 75.0
BraA09t41225Z Brassica rapa HOM05D002008 ORTHO05D002054 8.3e-09 63.5 33 81.8
Phvul.002G320900 Phaseolus vulgaris HOM05D002008 ORTHO05D002054 3.2e-08 61.6 40 72.5
BcaB08g34978 Brassica carinata HOM05D002008 ORTHO05D002054 4.1e-08 61.2 30 83.3
ECA233G0344 Erigeron canadensis HOM05D002008 ORTHO05D002054 4.1e-08 61.2 39 74.4
Hund06284 Selenicereus undatus HOM05D002008 ORTHO05D002054 5.4e-08 60.8 43 67.4
Aqoxy5G01476 Aquilegia oxysepala HOM05D002008 ORTHO05D002054 7.1e-08 60.5 40 72.5
Gohir.A04G123700 Gossypium hirsutum HOM05D002008 ORTHO05D002054 7.1e-08 60.5 45 66.7
Oeu008605.1 Olea europaea HOM05D002008 ORTHO05D002054 7.1e-08 60.5 54 57.4
Sabra04G0109500 Salix brachista HOM05D002008 ORTHO05D002054 7.1e-08 60.5 43 72.1
Migut.B00172 Erythranthe guttata HOM05D002008 ORTHO05D002054 9.2e-08 60.1 42 71.4
Manes.10G063400 Manihot esculenta HOM05D002008 ORTHO05D002054 1.2e-07 59.7 51 56.9
SGA_v2.0_scaffold58G20460 Striga asiatica HOM05D002008 ORTHO05D002054 1.2e-07 59.7 37 78.4
ATR0559G265 Amborella trichopoda HOM05D002008 ORTHO05D002054 1.6e-07 59.3 57 49.1
Ciclev10028844m.g Citrus clementina HOM05D002008 ORTHO05D002054 1.6e-07 59.3 43 65.1
Nn5g28202 Nelumbo nucifera HOM05D002008 ORTHO05D002054 1.6e-07 59.3 41 65.9
MSTRG.16853 Avicennia marina HOM05D002008 ORTHO05D002054 2.1e-07 58.9 43 62.8
ClCG11G003840 Citrullus lanatus HOM05D002008 ORTHO05D002054 2.1e-07 58.9 39 71.8
Gohir.A12G040900 Gossypium hirsutum HOM05D002008 ORTHO05D002054 2.1e-07 58.9 45 62.2
THA.LOC104804111 Tarenaya hassleriana HOM05D002008 ORTHO05D002054 2.1e-07 58.9 43 65.1
Gorai.008G032200 Gossypium raimondii HOM05D002008 ORTHO05D002054 2.7e-07 58.5 45 62.2
Nitab4.5_0005266g0070 Nicotiana tabacum HOM05D002008 ORTHO05D002054 2.7e-07 58.5 40 70.0
Peaxi162Scf00016g00033 Petunia axillaris HOM05D002008 ORTHO05D002054 2.7e-07 58.5 42 66.7
Cpa.g.sc150.14 Carica papaya HOM05D002008 ORTHO05D002054 3.5e-07 58.2 41 65.9
AUR62010379 Chenopodium quinoa HOM05D002008 ORTHO05D002054 3.5e-07 58.2 45 62.2
Gohir.D12G031500 Gossypium hirsutum HOM05D002008 ORTHO05D002054 3.5e-07 58.2 45 62.2
Lsat_1_v5_gn_4_67401 Lactuca sativa HOM05D002008 ORTHO05D002054 3.5e-07 58.2 30 83.3
C04p50510 Brassica napus HOM05D002008 ORTHO05D002054 7.8e-07 57.0 43 60.5
BolC4t26649H Brassica oleracea HOM05D002008 ORTHO05D002054 7.8e-07 57.0 43 60.5
Nn5g29241 Nelumbo nucifera HOM05D002008 ORTHO05D002054 1.0e-06 56.6 41 61.0
Atru.chr5.3151 Acer truncatum HOM05D002008 ORTHO05D002054 1.7e-06 55.8 43 62.8
Atru.chr5.3165 Acer truncatum HOM05D002008 ORTHO05D002054 1.7e-06 55.8 43 62.8
PSO170G1457 Papaver somniferum HOM05D002008 ORTHO05D002054 1.7e-06 55.8 55 54.5
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.7e-06 55.8 81 44.4
CSS0025845 Camellia sinensis var. sinensis HOM05D002008 ORTHO05D002054 2.3e-06 55.5 30 86.7
AUR62016839 Chenopodium quinoa HOM05D002008 ORTHO05D002054 2.3e-06 55.5 43 65.1
QL11p046472 Quercus lobata HOM05D002008 ORTHO05D002054 2.3e-06 55.5 33 72.7
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.0e-06 55.1 43 62.8
HanXRQChr10g0294171 Helianthus annuus HOM05D002008 ORTHO05D002054 3.0e-06 55.1 29 79.3
Lsat_1_v5_gn_8_128041 Lactuca sativa HOM05D002008 ORTHO05D002054 3.9e-06 54.7 29 79.3
Rhsim10G0053500 Rhododendron simsii HOM05D000041 ORTHO05D000452 3.9e-06 54.7 31 83.9
SalBow6G3341 Salvia bowleyana HOM05D002008 ORTHO05D002054 3.9e-06 54.7 55 54.5
CiPaw.05G073600 Carya illinoinensis HOM05D002008 ORTHO05D002054 5.1e-06 54.3 45 57.8
Oeu010048.1 Olea europaea HOM05D002008 ORTHO05D002054 5.1e-06 54.3 40 65.0
MELO3C023358.2 Cucumis melo HOM05D002008 ORTHO05D002054 6.6e-06 53.9 39 66.7
AL7G10830 Arabidopsis lyrata HOM05D002008 ORTHO05D002054 8.6e-06 53.5 41 61.0
AT4G38930 Arabidopsis thaliana HOM05D002008 ORTHO05D002054 8.6e-06 53.5 36 58.3
ECA233G2134 Erigeron canadensis HOM05D002008 ORTHO05D002054 8.6e-06 53.5 44 63.6


User provided reference genes

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