Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0181600 Rhododendron simsii HOM05D000327 ORTHO05D038965 4.3e-73 277.7 123 100.0
Cc00_g20300 Coffea canephora HOM05D000327 ORTHO05D000218 4.1e-15 85.1 54 64.8
HanXRQChr16g0505121 Helianthus annuus HOM05D000327 ORTHO05D000218 4.1e-15 85.1 54 64.8
Oeu055616.2 Olea europaea HOM05D000327 ORTHO05D000218 4.1e-15 85.1 99 38.4
CSS0010733 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.2e-14 83.6 54 64.8
ECA236G1405 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.2e-14 83.6 54 64.8
Lsat_1_v5_gn_7_91840 Lactuca sativa HOM05D000327 ORTHO05D000218 1.2e-14 83.6 54 64.8
MSTRG.27683 Avicennia marina HOM05D000327 ORTHO05D000218 1.5e-14 83.2 88 50.0
Lj9A378T61 Lonicera japonica HOM05D000327 ORTHO05D000218 1.5e-14 83.2 54 61.1
Hma1.2p1_0851F.1_g228350 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 3.4e-14 82.0 80 43.8
Migut.N01265 Erythranthe guttata HOM05D000327 ORTHO05D000218 1.0e-13 80.5 54 61.1
DCAR_023028 Daucus carota HOM05D000327 ORTHO05D000218 1.3e-13 80.1 54 61.1
SalBow3G4416 Salvia bowleyana HOM05D000327 ORTHO05D000218 2.2e-13 79.3 69 50.7
Nitab4.5_0004423g0020 Nicotiana tabacum HOM05D000327 ORTHO05D000218 5.0e-13 78.2 53 60.4
Dinv42023 Davidia involucrata HOM05D000327 ORTHO05D000218 6.5e-13 77.8 54 57.4
Solyc01g110100.4 Solanum lycopersicum HOM05D000327 ORTHO05D000218 8.5e-13 77.4 54 55.6
Sopen01g052260 Solanum pennellii HOM05D000327 ORTHO05D000218 8.5e-13 77.4 54 55.6
PGSC0003DMG400030956 Solanum tuberosum HOM05D000327 ORTHO05D000218 8.5e-13 77.4 54 55.6
MSTRG.5416 Avicennia marina HOM05D000327 ORTHO05D038965 1.1e-12 77.0 53 58.5
CAN.G170.74 Capsicum annuum HOM05D000327 ORTHO05D000218 1.1e-12 77.0 54 57.4
Nn8g38524 Nelumbo nucifera HOM05D000327 ORTHO05D000218 1.1e-12 77.0 74 43.2
HanXRQChr04g0127741 Helianthus annuus HOM05D000327 ORTHO05D000218 1.4e-12 76.6 112 37.5
Ciclev10024462m.g Citrus clementina HOM05D000327 ORTHO05D000218 2.5e-12 75.9 53 56.6
HanXRQChr04g0127751 Helianthus annuus HOM05D000327 ORTHO05D000218 2.5e-12 75.9 54 55.6
TAR636G0050 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.5e-12 75.9 112 32.1
Nitab4.5_0007812g0020 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.2e-12 75.1 54 57.4
Rhsim11G0181700 Rhododendron simsii HOM05D000327 ORTHO05D000218 4.2e-12 75.1 54 57.4
Ciclev10023510m.g Citrus clementina HOM05D000327 ORTHO05D000218 5.5e-12 74.7 53 54.7
CAN.G170.72 Capsicum annuum HOM05D000327 ORTHO05D000218 7.2e-12 74.3 54 53.7
Ciclev10023603m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.2e-12 74.3 53 56.6
Duzib151G0930 Durio zibethinus HOM05D000327 ORTHO05D000218 7.2e-12 74.3 54 53.7
Aqoxy7G00941 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 9.4e-12 73.9 69 42.0
Duzib268G0651 Durio zibethinus HOM05D000327 ORTHO05D000218 9.4e-12 73.9 54 55.6
Oeu003747.1 Olea europaea HOM05D000327 ORTHO05D000218 9.4e-12 73.9 84 45.2
Nitab4.5_0003566g0060 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.6e-11 73.2 54 55.6
Sopen01g052250 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-11 72.8 50 58.0
Solyc01g110090.1 Solanum lycopersicum HOM05D000327 ORTHO05D000218 2.7e-11 72.4 50 54.0
Solyc01g110080.2 Solanum lycopersicum HOM05D000327 ORTHO05D000218 3.6e-11 72.0 50 56.0
TAR626G1662 Trochodendron aralioides HOM05D000327 ORTHO05D000218 4.7e-11 71.6 93 37.6
Ciclev10023776m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.9e-11 70.9 53 54.7
CAN.G170.77 Capsicum annuum HOM05D000327 ORTHO05D000218 1.0e-10 70.5 54 55.6
Sopen03g036310 Solanum pennellii HOM05D000327 ORTHO05D000218 1.0e-10 70.5 66 43.9
Ciclev10021518m.g Citrus clementina HOM05D000327 ORTHO05D000218 1.8e-10 69.7 53 50.9
Ciclev10021730m.g Citrus clementina HOM05D000327 ORTHO05D000218 2.3e-10 69.3 53 50.9
Rhsim11G0181800 Rhododendron simsii HOM05D000327 ORTHO05D000218 2.3e-10 69.3 59 49.2
TWI74G1609 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 2.3e-10 69.3 54 53.7
CAN.G170.71 Capsicum annuum HOM05D000327 ORTHO05D000218 3.9e-10 68.6 53 49.1
TAR636G3664 Trochodendron aralioides HOM05D000327 ORTHO05D000218 3.9e-10 68.6 89 36.0
Peaxi162Scf00362g00925 Petunia axillaris HOM05D000327 ORTHO05D000218 5.1e-10 68.2 92 37.0
vmacro02069 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 6.7e-10 67.8 44 59.1
Ciclev10023377m.g Citrus clementina HOM05D000327 ORTHO05D000218 1.1e-09 67.0 55 49.1
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.1e-09 67.0 66 50.0
Manes.04G038300 Manihot esculenta HOM05D000327 ORTHO05D000218 1.5e-09 66.6 54 50.0
TWI77G0769 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 2.0e-09 66.2 54 51.9
Thecc.04G169900 Theobroma cacao HOM05D000327 ORTHO05D000218 2.6e-09 65.9 54 46.3
Nitab4.5_0005919g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.3e-09 65.5 54 48.1
Aqoxy7G00953 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 4.4e-09 65.1 53 49.1
Aqoxy7G00969 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 4.4e-09 65.1 54 48.1
MBI13_g01683_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 5.7e-09 64.7 54 48.1
Peaxi162Scf00016g00353 Petunia axillaris HOM05D000327 ORTHO05D000218 5.7e-09 64.7 82 41.5
Nitab4.5_0003566g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 7.4e-09 64.3 50 50.0
Nitab4.5_0003566g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 7.4e-09 64.3 54 48.1
SalBow1G1612 Salvia bowleyana HOM05D000327 ORTHO05D000218 7.4e-09 64.3 72 36.1
Aqoxy7G00943 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 2.8e-08 62.4 54 38.9
QL10p052667 Quercus lobata HOM05D000327 ORTHO05D000218 2.8e-08 62.4 47 48.9
Sabra06G0097700 Salix brachista HOM05D000327 ORTHO05D000218 2.8e-08 62.4 54 48.1
Aqoxy7G00942 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 3.7e-08 62.0 65 36.9
Actinidia25497 Actinidia chinensis HOM05D000327 ORTHO05D000218 4.8e-08 61.6 87 35.6
Nitab4.5_0004890g0030 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.8e-08 61.6 73 39.7
Potri.019G093600 Populus trichocarpa HOM05D000327 ORTHO05D000218 4.8e-08 61.6 54 48.1
Medtr3g463280 Medicago truncatula HOM05D000327 ORTHO05D000218 6.3e-08 61.2 77 37.7
Nitab4.5_0001128g0030 Nicotiana tabacum HOM05D000327 ORTHO05D000218 6.3e-08 61.2 55 45.5
Potri.013G120300 Populus trichocarpa HOM05D000327 ORTHO05D000218 8.2e-08 60.8 54 48.1
Aqoxy7G00932 Aquilegia oxysepala HOM05D000835 ORTHO05D004825 1.1e-07 60.5 44 50.0
Potri.006G123500 Populus trichocarpa HOM05D000327 ORTHO05D000218 1.1e-07 60.5 54 48.1
Sabra13G0101600 Salix brachista HOM05D000327 ORTHO05D000218 1.1e-07 60.5 54 48.1
Solyc06g068640.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 1.1e-07 60.5 54 46.3
CiPaw.01G051000 Carya illinoinensis HOM05D000327 ORTHO05D000218 1.4e-07 60.1 55 45.5
Nitab4.5_0005766g0040 Nicotiana tabacum HOM05D000327 ORTHO05D000218 1.4e-07 60.1 51 43.1
Eucgr.E03057 Eucalyptus grandis HOM05D000327 ORTHO05D000218 1.8e-07 59.7 54 46.3
Eucgr.E03590 Eucalyptus grandis HOM05D000327 ORTHO05D000218 1.8e-07 59.7 54 46.3
Lalb_Chr10g0100521 Lupinus albus HOM05D000327 ORTHO05D000218 1.8e-07 59.7 56 46.4
PGR042G1871 Punica granatum HOM05D000327 ORTHO05D000218 1.8e-07 59.7 55 47.3
Sabra19G0106900 Salix brachista HOM05D000327 ORTHO05D000218 1.8e-07 59.7 54 46.3
PGR042G3987 Punica granatum HOM05D000327 ORTHO05D000218 2.4e-07 59.3 55 45.5
Dinv23255 Davidia involucrata HOM05D000327 ORTHO05D000218 3.1e-07 58.9 54 48.1
Eucgr.E03058 Eucalyptus grandis HOM05D000327 ORTHO05D000218 3.1e-07 58.9 55 45.5
Eucgr.E03591 Eucalyptus grandis HOM05D000327 ORTHO05D000218 3.1e-07 58.9 55 45.5
Hma1.2p1_0554F.1_g177890 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 3.1e-07 58.9 54 42.6
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.1e-07 58.9 66 47.0
CAN.G837.29 Capsicum annuum HOM05D000327 ORTHO05D000218 4.1e-07 58.5 65 38.5
Prupe.7G191400 Prunus persica HOM05D000327 ORTHO05D000218 4.1e-07 58.5 70 38.6
Aqoxy7G00954 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 5.3e-07 58.2 55 38.2
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 5.3e-07 58.2 60 38.3
CiPaw.02G024100 Carya illinoinensis HOM05D000327 ORTHO05D000218 5.3e-07 58.2 54 44.4
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 5.3e-07 58.2 80 37.5
ECA247G4029 Erigeron canadensis HOM05D000327 ORTHO05D000218 5.3e-07 58.2 53 47.2
Hma1.2p1_1281F.1_g272640 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 5.3e-07 58.2 54 40.7
Hma1.2p1_1281F.1_g272646 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 5.3e-07 58.2 54 40.7
Potri.003G187700 Populus trichocarpa HOM05D000327 ORTHO05D000218 5.3e-07 58.2 55 43.6
ATR0099G091 Amborella trichopoda HOM05D000327 ORTHO05D000218 7.0e-07 57.8 52 48.1
Ciclev10026066m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.0e-07 57.8 55 43.6
Ciclev10026144m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.0e-07 57.8 55 43.6
Duzib192G0151 Durio zibethinus HOM05D000327 ORTHO05D000218 7.0e-07 57.8 55 41.8
Duzib192G0416 Durio zibethinus HOM05D000327 ORTHO05D000218 7.0e-07 57.8 55 41.8
Os09g0283600 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 7.0e-07 57.8 54 46.3
Thecc.06G132300 Theobroma cacao HOM05D000327 ORTHO05D000218 7.0e-07 57.8 55 41.8
Dinv44172 Davidia involucrata HOM05D000327 ORTHO05D000218 9.1e-07 57.4 44 43.2
HanXRQChr06g0170941 Helianthus annuus HOM05D000327 ORTHO05D000218 9.1e-07 57.4 54 46.3
Nn8g41136 Nelumbo nucifera HOM05D000327 ORTHO05D000218 9.1e-07 57.4 52 44.2
Oeu040064.1 Olea europaea HOM05D000327 ORTHO05D000218 9.1e-07 57.4 73 35.6
Potri.018G064400 Populus trichocarpa HOM05D000327 ORTHO05D000218 9.1e-07 57.4 77 36.4
QL05p001483 Quercus lobata HOM05D000327 ORTHO05D000218 9.1e-07 57.4 54 44.4
QL05p001758 Quercus lobata HOM05D000327 ORTHO05D000218 9.1e-07 57.4 54 44.4
Rhsim08G0200800 Rhododendron simsii HOM05D000327 ORTHO05D000218 9.1e-07 57.4 54 42.6
SGA_v2.0_scaffold515G52654 Striga asiatica HOM05D000327 ORTHO05D000218 9.1e-07 57.4 57 40.4
CANSAT78G1564 Cannabis sativa HOM05D000327 ORTHO05D000218 1.2e-06 57.0 54 40.7
Carub.0004s0638 Capsella rubella HOM05D000327 ORTHO05D000218 1.2e-06 57.0 57 40.4
Haze_15183 Corylus avellana HOM05D000327 ORTHO05D000218 1.2e-06 57.0 54 44.4
Haze_15248 Corylus avellana HOM05D000327 ORTHO05D000218 1.2e-06 57.0 54 42.6
Oeu036449.2 Olea europaea HOM05D000327 ORTHO05D000218 1.2e-06 57.0 65 41.5
Os09g0420100 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 1.2e-06 57.0 58 39.7
Psat4g165960 Pisum sativum HOM05D000327 ORTHO05D000218 1.2e-06 57.0 54 40.7
TPR.G21847 Trifolium pratense HOM05D000327 ORTHO05D000218 1.2e-06 57.0 74 32.4
AL5G34660 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 1.5e-06 56.6 58 39.7
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.5e-06 56.6 59 39.0
FvH4_3g03010 Fragaria vesca HOM05D000327 ORTHO05D000218 1.5e-06 56.6 58 41.4
Lj5C83T10 Lonicera japonica HOM05D000327 ORTHO05D000218 1.5e-06 56.6 54 44.4
Lalb_Chr08g0232831 Lupinus albus HOM05D000327 ORTHO05D000218 1.5e-06 56.6 50 44.0
Medtr2g044440 Medicago truncatula HOM05D000327 ORTHO05D000218 1.5e-06 56.6 58 39.7
PGR044G1674 Punica granatum HOM05D000327 ORTHO05D000218 2.0e-06 56.2 73 37.0
Sabra01G0026100 Salix brachista HOM05D001467 ORTHO05D001447 2.0e-06 56.2 55 41.8
EL10Ac8g18961 Beta vulgaris HOM05D000327 ORTHO05D000218 2.6e-06 55.8 58 39.7
AUR62001417 Chenopodium quinoa HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 46.3
AUR62028327 Chenopodium quinoa HOM05D000327 ORTHO05D000218 2.6e-06 55.8 58 41.4
COL.COLO4_30892 Corchorus olitorius HOM05D000327 ORTHO05D000218 2.6e-06 55.8 55 40.0
Dinv13686 Davidia involucrata HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 44.4
Dinv21444 Davidia involucrata HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 44.4
Duzib235G0649 Durio zibethinus HOM05D000327 ORTHO05D000218 2.6e-06 55.8 55 41.8
Manes.04G097600 Manihot esculenta HOM05D000327 ORTHO05D000218 2.6e-06 55.8 56 39.3
Nitab4.5_0004085g0020 Nicotiana tabacum HOM05D000327 ORTHO05D000218 2.6e-06 55.8 53 45.3
QL05p083434 Quercus lobata HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 42.6
QL05p083515 Quercus lobata HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 42.6
PGSC0003DMG400028928 Solanum tuberosum HOM05D000327 ORTHO05D000218 2.6e-06 55.8 54 44.4
vmacro14169 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 2.6e-06 55.8 61 39.3
HPP92_019286 Vanilla planifolia HOM05D000327 ORTHO05D000218 2.6e-06 55.8 76 32.9
CSS0017810 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.4e-06 55.5 88 33.0
CSS0039742 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 3.4e-06 55.5 88 33.0
ClCG08G000540 Citrullus lanatus HOM05D000327 ORTHO05D000218 3.4e-06 55.5 56 37.5
Dinv44904 Davidia involucrata HOM05D000327 ORTHO05D000218 3.4e-06 55.5 54 38.9
ECA238G3468 Erigeron canadensis HOM05D000327 ORTHO05D000218 3.4e-06 55.5 54 38.9
MD15G1224100 Malus domestica HOM05D000327 ORTHO05D000218 3.4e-06 55.5 55 40.0
THA.LOC104819453 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 3.4e-06 55.5 54 38.9
CANSAT54G1218 Cannabis sativa HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 40.7
FAN21G2760 Fragaria x ananassa HOM05D000327 ORTHO05D000218 4.5e-06 55.1 58 41.4
FAN25G1288 Fragaria x ananassa HOM05D000327 ORTHO05D000218 4.5e-06 55.1 58 41.4
Peaxi162Scf00274g00446 Petunia axillaris HOM05D000327 ORTHO05D000218 4.5e-06 55.1 63 36.5
Psat1g138480 Pisum sativum HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 40.7
Potri.001G037200 Populus trichocarpa HOM05D000327 ORTHO05D000218 4.5e-06 55.1 55 41.8
QL05p083473 Quercus lobata HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 38.9
QL05p083528 Quercus lobata HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 38.9
QL05p083540 Quercus lobata HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 38.9
Sc08g0009200 Simmondsia chinensis HOM05D000327 ORTHO05D000218 4.5e-06 55.1 69 39.1
GSVIVG01016055001 Vitis vinifera HOM05D000327 ORTHO05D000218 4.5e-06 55.1 54 42.6
Atru.chr1.2754 Acer truncatum HOM05D000327 ORTHO05D000218 5.9e-06 54.7 55 41.8
AUR62009952 Chenopodium quinoa HOM05D000327 ORTHO05D000218 5.9e-06 54.7 54 46.3
AUR62009953 Chenopodium quinoa HOM05D000327 ORTHO05D000218 5.9e-06 54.7 54 46.3
AUR62025578 Chenopodium quinoa HOM05D000327 ORTHO05D000218 5.9e-06 54.7 54 46.3
Eucgr.E03050 Eucalyptus grandis HOM05D000327 ORTHO05D000218 5.9e-06 54.7 54 42.6
HanXRQChr14g0427551 Helianthus annuus HOM05D000327 ORTHO05D000218 5.9e-06 54.7 53 41.5
Medtr1g105450 Medicago truncatula HOM05D000327 ORTHO05D000218 5.9e-06 54.7 54 42.6
Medtr2g044250 Medicago truncatula HOM05D000327 ORTHO05D000218 5.9e-06 54.7 58 37.9
TAR383G0998 Trochodendron aralioides HOM05D000327 ORTHO05D000218 5.9e-06 54.7 58 39.7
Actinidia19271 Actinidia chinensis HOM05D000327 ORTHO05D000218 7.7e-06 54.3 52 38.5
Aqoxy7G04161 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 7.7e-06 54.3 54 40.7
CiPaw.02G131800 Carya illinoinensis HOM05D000327 ORTHO05D000218 7.7e-06 54.3 54 42.6
Ciclev10024204m.g Citrus clementina HOM05D000327 ORTHO05D000218 7.7e-06 54.3 37 56.8
Cc00_g30460 Coffea canephora HOM05D000327 ORTHO05D000218 7.7e-06 54.3 54 42.6
CsaV3_5G040290 Cucumis sativus L. HOM05D000327 ORTHO05D000218 7.7e-06 54.3 59 37.3
MD02G1103200 Malus domestica HOM05D000327 ORTHO05D000218 7.7e-06 54.3 55 40.0
RcHm_v2.0_Chr2g0096011 Rosa chinensis HOM05D000327 ORTHO05D000218 7.7e-06 54.3 55 36.4
TPR.G5490 Trifolium pratense HOM05D000327 ORTHO05D000218 7.7e-06 54.3 54 44.4
vmacro19090 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 7.7e-06 54.3 54 40.7


User provided reference genes

Program Settings