Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0170700 Rhododendron simsii HOM05D008110 ORTHO05D000088 2.2e-148 528.9 255 100.0
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 7.3e-59 231.5 223 52.5
CSS0024769 Camellia sinensis var. sinensis HOM05D008110 ORTHO05D000088 2.3e-49 199.9 134 66.4
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 5.1e-44 182.2 134 60.4
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.5e-40 170.6 138 52.9
Hma1.2p1_1527F.1_g289060 Hydrangea macrophylla HOM05D008110 ORTHO05D000088 7.8e-37 158.3 139 51.8
DCAR_022075 Daucus carota HOM05D008110 ORTHO05D000088 3.9e-36 156.0 127 55.9
Rhsim02G0167400 Rhododendron simsii HOM05D008110 ORTHO05D000088 9.6e-35 151.4 109 63.3
PGSC0003DMG401025831 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.6e-32 143.3 132 48.5
Nitab4.5_0008194g0010 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.1e-30 137.9 112 50.0
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 1.9e-30 137.1 112 49.1
Solyc01g108950.3 Solanum lycopersicum HOM05D008110 ORTHO05D000088 5.4e-30 135.6 139 42.4
CAN.G322.83 Capsicum annuum HOM05D008110 ORTHO05D000088 1.2e-29 134.4 113 48.7
Peaxi162Scf00016g01351 Petunia axillaris HOM05D008110 ORTHO05D000088 1.6e-29 134.0 111 48.6
Solyc01g106250.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.6e-29 134.0 112 47.3
Sopen01g051160 Solanum pennellii HOM05D008110 ORTHO05D000088 1.6e-29 134.0 139 42.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.1e-29 133.7 125 47.2
PGSC0003DMG400010668 Solanum tuberosum HOM05D008110 ORTHO05D000088 4.6e-29 132.5 113 46.0
Sopen01g048640 Solanum pennellii HOM05D008110 ORTHO05D000088 6.0e-29 132.1 112 46.4
CAN.G241.1 Capsicum annuum HOM05D008110 ORTHO05D000088 8.7e-28 128.3 114 45.6
Sopen02g009350 Solanum pennellii HOM05D008110 ORTHO05D000088 7.3e-27 125.2 113 46.9
Solyc02g026080.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.6e-26 124.0 113 47.8
Migut.N02603 Erythranthe guttata HOM05D008110 ORTHO05D000088 2.1e-26 123.6 113 48.7
CAN.G192.15 Capsicum annuum HOM05D008110 ORTHO05D000088 2.8e-26 123.2 129 41.1
PGSC0003DMG400025830 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.8e-26 123.2 113 46.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 6.2e-26 122.1 206 36.4
Cc00_g00230 Coffea canephora HOM05D008110 ORTHO05D000088 1.4e-25 120.9 111 43.2
CAN.G322.59 Capsicum annuum HOM05D008110 ORTHO05D000088 1.2e-24 117.9 150 39.3
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 4.5e-24 115.9 110 43.6
Solyc01g109030.4 Solanum lycopersicum HOM05D008110 ORTHO05D000088 2.2e-23 113.6 111 45.9
Migut.J01193 Erythranthe guttata HOM05D008110 ORTHO05D000088 8.4e-23 111.7 114 40.4
MSTRG.17812 Avicennia marina HOM05D008110 ORTHO05D000088 9.3e-22 108.2 113 43.4
SalBow7G1050 Salvia bowleyana HOM05D008110 ORTHO05D000088 1.8e-20 104.0 143 37.8
SGA_v2.0_scaffold54G19507 Striga asiatica HOM05D008110 ORTHO05D000088 3.9e-20 102.8 120 38.3
CAN.G555.3 Capsicum annuum HOM05D008110 ORTHO05D000088 6.7e-20 102.1 110 40.9
Solyc01g108940.2 Solanum lycopersicum HOM05D008110 ORTHO05D000088 1.9e-19 100.5 108 40.7
Sopen02g006830 Solanum pennellii HOM05D008110 ORTHO05D000088 3.3e-19 99.8 88 47.7
Atru.chr9.727 Acer truncatum HOM05D008110 ORTHO05D000088 3.7e-18 96.3 105 39.0
EL10Ac9g21796 Beta vulgaris HOM05D000823 ORTHO05D000088 1.8e-17 94.0 131 37.4
Eucgr.I01213 Eucalyptus grandis HOM05D008110 ORTHO05D000088 1.8e-17 94.0 125 37.6
Eucgr.A01956 Eucalyptus grandis HOM05D008110 ORTHO05D000088 2.4e-17 93.6 125 36.0
PGSC0003DMG400036386 Solanum tuberosum HOM05D008110 ORTHO05D000088 2.4e-17 93.6 92 45.7
SGA_v2.0_scaffold223G42874 Striga asiatica HOM05D008110 ORTHO05D000088 3.1e-17 93.2 118 37.3
Duzib248G0315 Durio zibethinus HOM05D008110 ORTHO05D000088 2.6e-16 90.1 100 39.0
Oeu003285.1 Olea europaea HOM05D008110 ORTHO05D000088 4.5e-16 89.4 98 41.8
PGSC0003DMG400037529 Solanum tuberosum HOM05D008110 ORTHO05D000088 4.9e-15 85.9 87 41.4
SGA_v2.0_scaffold54G19506 Striga asiatica HOM05D008110 ORTHO05D000088 4.9e-15 85.9 142 28.9
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 6.5e-15 85.5 110 39.1
PGSC0003DMG400044725 Solanum tuberosum HOM05D008110 ORTHO05D000088 3.2e-14 83.2 70 48.6
Ciclev10028843m.g Citrus clementina HOM05D000823 ORTHO05D000088 7.1e-14 82.0 96 42.7
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 9.3e-14 81.6 61 67.2
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 4.6e-13 79.3 145 29.7
Sopen01g051140 Solanum pennellii HOM05D008110 ORTHO05D000088 4.6e-13 79.3 105 39.0
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 6.0e-13 79.0 300 28.0
PGSC0003DMG400035405 Solanum tuberosum HOM05D008110 ORTHO05D000088 6.0e-13 79.0 105 37.1
Gohir.D09G086300 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.0e-12 78.2 195 31.8
TWI31G0648 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.0e-12 78.2 99 36.4
Thecc.02G027900 Theobroma cacao HOM05D008110 ORTHO05D000088 2.3e-12 77.0 103 40.8
Sopen06g015150 Solanum pennellii HOM05D008110 ORTHO05D000088 3.0e-12 76.6 120 36.7
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 3.9e-12 76.3 87 33.3
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.7e-12 75.1 240 25.0
PGSC0003DMG400044605 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.1e-11 74.7 94 39.4
Nn5g29404 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.5e-11 74.3 138 25.4
Sopen01g051220 Solanum pennellii HOM05D008110 ORTHO05D000088 1.5e-11 74.3 68 42.6
Haze_08008 Corylus avellana HOM05D000823 ORTHO05D000088 4.3e-11 72.8 114 29.8
THA.LOC104807272 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 4.3e-11 72.8 102 35.3
Actinidia36524 Actinidia chinensis HOM05D001349 ORTHO05D001980 5.7e-11 72.4 121 28.9
COL.COLO4_32520 Corchorus olitorius HOM05D008110 ORTHO05D000088 5.7e-11 72.4 109 36.7
Glyma.12G048500 Glycine max HOM05D010195 ORTHO05D000088 5.7e-11 72.4 136 30.9
vmacro02160 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 5.7e-11 72.4 95 46.3
Glyma.12G049900 Glycine max HOM05D010195 ORTHO05D000088 7.4e-11 72.0 170 28.8
BcaB04g20080 Brassica carinata HOM05D000823 ORTHO05D000088 9.6e-11 71.6 103 28.2
SalBow3G0306 Salvia bowleyana HOM05D008110 ORTHO05D000088 9.6e-11 71.6 80 35.0
CAN.G192.14 Capsicum annuum HOM05D008110 ORTHO05D000088 1.3e-10 71.2 88 39.8
Glyma.11G124000 Glycine max HOM05D010195 ORTHO05D000088 1.3e-10 71.2 111 34.2
Gorai.006G102500 Gossypium raimondii HOM05D000823 ORTHO05D000088 1.6e-10 70.9 122 35.2
Hund06201 Selenicereus undatus HOM05D000823 ORTHO05D000088 2.8e-10 70.1 70 48.6
Sp2g29690 Schrenkiella parvula HOM05D000823 ORTHO05D000088 3.7e-10 69.7 103 27.2
CiPaw.02G012800 Carya illinoinensis HOM05D000823 ORTHO05D000088 4.8e-10 69.3 102 29.4
Phvul.008G220000 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 4.8e-10 69.3 138 31.9
CAN.G504.44 Capsicum annuum HOM05D000185 ORTHO05D000105 6.3e-10 68.9 65 46.2
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 6.3e-10 68.9 224 27.2
DCAR_022876 Daucus carota HOM05D000823 ORTHO05D000088 1.1e-09 68.2 112 30.4
THA.LOC104807340 Tarenaya hassleriana HOM05D006628 ORTHO05D000088 1.1e-09 68.2 104 35.6
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.4e-09 67.8 59 61.0
Medtr1g046200 Medicago truncatula HOM05D010195 ORTHO05D000088 1.4e-09 67.8 149 27.5
C09p11350 Brassica napus HOM05D000823 ORTHO05D000088 1.8e-09 67.4 200 25.0
PGSC0003DMG400045703 Solanum tuberosum HOM05D008110 ORTHO05D000088 1.8e-09 67.4 60 45.0
BolC9t54023H Brassica oleracea HOM05D000823 ORTHO05D000088 2.4e-09 67.0 195 25.1
Carub.0008s2085 Capsella rubella HOM05D009243 ORTHO05D011355 3.1e-09 66.6 146 24.0
Aa31LG1G15520 Aethionema arabicum HOM05D000823 ORTHO05D000088 4.1e-09 66.2 103 28.2
Thhalv10010633m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 4.1e-09 66.2 83 39.8
AT5G66980 Arabidopsis thaliana HOM05D000823 ORTHO05D000088 5.3e-09 65.9 118 26.3
Psat6g109080 Pisum sativum HOM05D010195 ORTHO05D000088 5.3e-09 65.9 151 31.1
AL8G44400 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 9.0e-09 65.1 118 27.1
Sp5g09020 Schrenkiella parvula HOM05D006628 ORTHO05D000088 9.0e-09 65.1 83 41.0
Cpa.g.sc15.87 Carica papaya HOM05D000823 ORTHO05D000088 1.2e-08 64.7 99 30.3
Thhalv10000999m.g Eutrema salsugineum HOM05D006628 ORTHO05D000088 1.2e-08 64.7 83 38.6
AT5G60140 Arabidopsis thaliana HOM05D009243 ORTHO05D011355 1.5e-08 64.3 98 30.6
Potri.007G035500 Populus trichocarpa HOM05D000823 ORTHO05D000088 1.5e-08 64.3 99 32.3
BraA09t36609Z Brassica rapa HOM05D000823 ORTHO05D000088 2.0e-08 63.9 201 25.4
CARHR280710 Cardamine hirsuta HOM05D000823 ORTHO05D000088 2.0e-08 63.9 103 26.2
Thhalv10014488m.g Eutrema salsugineum HOM05D009243 ORTHO05D011355 2.6e-08 63.5 138 27.5
Glyma.14G055700 Glycine max HOM05D010195 ORTHO05D000088 2.6e-08 63.5 125 31.2
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 2.6e-08 63.5 201 27.9
A09p09600 Brassica napus HOM05D000823 ORTHO05D000088 4.5e-08 62.8 200 25.5
Haze_08007 Corylus avellana HOM05D000823 ORTHO05D000088 4.5e-08 62.8 93 33.3
Haze_08013 Corylus avellana HOM05D000823 ORTHO05D000088 4.5e-08 62.8 93 33.3
Sabra07G0031200 Salix brachista HOM05D000823 ORTHO05D000088 4.5e-08 62.8 99 29.3
BcaC04g23179 Brassica carinata HOM05D000823 ORTHO05D000088 1.0e-07 61.6 200 24.5
BolC8t50461H Brassica oleracea HOM05D006628 ORTHO05D000088 1.0e-07 61.6 130 30.8
Medtr1g046340 Medicago truncatula HOM05D010195 ORTHO05D000088 1.3e-07 61.2 141 28.4
Sp6g21790 Schrenkiella parvula HOM05D009243 ORTHO05D011355 1.3e-07 61.2 103 32.0
AT4G31650 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 1.7e-07 60.8 204 23.0
A09p46330 Brassica napus HOM05D006628 ORTHO05D000088 1.7e-07 60.8 106 34.0
Carub.0007s0593 Capsella rubella HOM05D006628 ORTHO05D000088 1.7e-07 60.8 120 31.7
ClCG01G016540 Citrullus lanatus HOM05D000395 ORTHO05D000088 1.7e-07 60.8 99 32.3
Atru.chr2.2906 Acer truncatum HOM05D000823 ORTHO05D000088 2.2e-07 60.5 100 26.0
Aa31LG10G8500 Aethionema arabicum HOM05D006628 ORTHO05D000088 2.2e-07 60.5 98 31.6
AT4G34400 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 2.2e-07 60.5 100 34.0
BraA09t40098Z Brassica rapa HOM05D006628 ORTHO05D000088 2.2e-07 60.5 83 38.6
Aqoxy6G00930 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 3.8e-07 59.7 215 24.2
Glyma.11G125200 Glycine max HOM05D010195 ORTHO05D000088 3.8e-07 59.7 140 28.6
AT3G53310 Arabidopsis thaliana HOM05D006628 ORTHO05D000088 5.0e-07 59.3 111 34.2
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 5.0e-07 59.3 216 23.6
Lj3g0010423 Lotus japonicus HOM05D010195 ORTHO05D000088 6.5e-07 58.9 141 27.7
Carub.0008s2753 Capsella rubella HOM05D000823 ORTHO05D000088 8.4e-07 58.5 101 31.7
Lj3g0008727 Lotus japonicus HOM05D010195 ORTHO05D000088 8.4e-07 58.5 147 25.9
Phvul.011G050500 Phaseolus vulgaris HOM05D010195 ORTHO05D000088 8.4e-07 58.5 126 27.0
BcaB02g07792 Brassica carinata HOM05D006628 ORTHO05D000088 1.1e-06 58.2 83 37.3
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 1.1e-06 58.2 188 23.9
Lj3g0014714 Lotus japonicus HOM05D010195 ORTHO05D000088 1.9e-06 57.4 125 28.0
A03p63270 Brassica napus HOM05D006628 ORTHO05D000088 2.5e-06 57.0 189 28.6
C06p21150 Brassica napus HOM05D006628 ORTHO05D000088 2.5e-06 57.0 83 37.3
Thhalv10004496m.g Eutrema salsugineum HOM05D000823 ORTHO05D000088 2.5e-06 57.0 86 27.9
VMungo1127G0073 Vigna mungo HOM05D000395 ORTHO05D000088 2.5e-06 57.0 126 28.6
BolC6t37302H Brassica oleracea HOM05D006628 ORTHO05D000088 3.2e-06 56.6 83 37.3
A07p21570 Brassica napus HOM05D006628 ORTHO05D000088 4.2e-06 56.2 83 37.3
BraA07t29840Z Brassica rapa HOM05D006628 ORTHO05D000088 4.2e-06 56.2 83 37.3
CARHR273770 Cardamine hirsuta HOM05D009243 ORTHO05D011355 5.5e-06 55.8 129 26.4
Sopen07g028530 Solanum pennellii HOM05D000395 ORTHO05D000088 5.5e-06 55.8 103 30.1
AL8G36740 Arabidopsis lyrata HOM05D009243 ORTHO05D011355 7.2e-06 55.5 89 29.2
Oeu025427.1 Olea europaea HOM05D044301 ORTHO05D000088 7.2e-06 55.5 87 32.2
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 9.3e-06 55.1 96 29.2
BcaC04g23181 Brassica carinata HOM05D000823 ORTHO05D000088 9.3e-06 55.1 87 28.7
Sopen05g025010 Solanum pennellii HOM05D008110 ORTHO05D000088 9.3e-06 55.1 49 46.9


User provided reference genes

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