Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 0.0e+00 1137.5 576 100.0
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.5e-282 974.2 576 87.7
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.2e-280 967.6 576 87.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.2e-240 834.7 577 75.6
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.8e-235 819.3 553 77.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.4e-235 817.8 577 75.0
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 2.7e-234 815.5 574 74.7
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 7.3e-232 807.4 579 74.4
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 8.3e-220 767.3 576 71.5
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 5.4e-219 764.6 468 82.5
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 5.4e-219 764.6 525 75.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.2e-218 763.5 573 71.4
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 4.6e-218 761.5 520 75.4
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.6e-218 761.5 452 84.5
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 6.0e-218 761.1 465 82.4
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 7.8e-218 760.8 438 87.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 1.0e-217 760.4 440 85.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.0e-217 760.4 449 84.6
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 6.6e-217 757.7 435 87.4
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 1.1e-216 756.9 449 83.7
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.9e-216 756.1 449 84.0
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 3.3e-216 755.4 449 84.0
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.2e-215 753.4 462 81.4
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.6e-215 751.9 434 86.2
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 4.7e-215 751.5 441 85.5
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 4.7e-215 751.5 541 73.9
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 6.2e-215 751.1 455 82.4
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 6.2e-215 751.1 458 81.7
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.2e-215 751.1 437 85.1
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.1e-214 750.4 434 86.6
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 4.0e-214 748.4 431 86.1
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 6.8e-214 747.7 428 86.7
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.6e-213 745.7 431 85.6
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 4.4e-213 745.0 428 86.2
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 9.9e-213 743.8 440 85.0
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 9.9e-213 743.8 441 83.9
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.7e-212 743.0 438 83.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.9e-212 741.5 443 84.4
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.9e-211 739.6 441 83.4
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.4e-211 739.2 433 84.5
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.2e-210 736.9 429 86.0
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.2e-210 736.9 433 85.0
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 6.0e-210 734.6 455 80.2
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.3e-209 733.4 435 83.4
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.3e-209 733.4 419 87.6
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 2.3e-209 732.6 588 65.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 3.0e-209 732.3 445 81.1
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.6e-209 731.1 458 81.2
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 8.6e-209 730.7 455 80.7
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.1e-208 730.3 440 82.5
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.1e-208 730.3 440 82.7
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.1e-208 730.3 438 84.5
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.3e-208 728.8 432 84.3
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.3e-208 728.8 464 79.5
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.6e-208 728.0 449 82.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 9.5e-208 727.2 452 80.5
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.1e-207 726.1 419 86.4
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 3.6e-207 725.3 438 81.7
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 6.2e-207 724.5 439 82.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.2e-207 724.5 432 84.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 6.2e-207 724.5 439 82.0
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.1e-206 723.8 426 85.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.1e-206 723.8 422 84.8
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.0e-206 721.8 432 83.6
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 4.0e-206 721.8 441 81.4
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.2e-206 721.5 437 81.9
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 5.2e-206 721.5 436 82.8
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 1.2e-205 720.3 435 83.2
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.3e-204 716.8 437 81.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 1.3e-204 716.8 453 79.2
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 2.2e-204 716.1 442 81.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.2e-204 716.1 437 81.5
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 4.9e-204 714.9 438 80.4
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 4.9e-204 714.9 438 81.1
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 6.4e-204 714.5 441 80.7
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 8.4e-204 714.1 428 82.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.4e-203 712.6 428 82.5
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 3.2e-203 712.2 429 82.1
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 3.2e-203 712.2 429 82.1
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 3.2e-203 712.2 441 79.6
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 4.2e-203 711.8 428 82.2
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 5.4e-203 711.4 457 78.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 5.4e-203 711.4 472 76.9
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 5.4e-203 711.4 437 80.5
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 7.1e-203 711.1 476 77.1
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.1e-202 709.5 441 80.3
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.7e-202 709.1 440 81.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 4.6e-202 708.4 441 79.4
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.7e-201 706.4 428 82.2
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 6.6e-201 704.5 428 82.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 8.7e-201 704.1 426 82.4
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.5e-200 703.4 428 82.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 4.3e-200 701.8 465 76.1
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.3e-200 701.8 428 82.0
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.3e-200 701.8 428 82.0
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.6e-199 699.9 441 78.9
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.1e-199 699.5 428 81.3
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.2e-199 698.0 435 78.4
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.1e-198 697.2 438 78.3
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.4e-198 696.8 428 81.3
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 3.1e-198 695.7 429 80.0
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 6.9e-198 694.5 432 79.2
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 6.9e-198 694.5 433 81.5
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.9e-195 686.4 447 77.6
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 4.2e-195 685.3 447 77.6
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 7.1e-195 684.5 437 78.0
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 2.7e-194 682.6 428 77.8
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 3.9e-193 678.7 442 75.6
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.7e-193 677.6 403 84.6
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 9.6e-192 674.1 450 77.1
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 3.2e-187 659.1 474 70.7
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.7e-186 656.0 440 76.8
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.3e-184 649.0 404 79.7
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 8.4e-180 634.4 423 73.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 6.7e-177 624.8 440 70.5
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 6.2e-175 618.2 430 70.0
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 8.2e-175 617.8 446 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 3.1e-166 589.3 428 67.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.6e-165 586.3 369 79.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 3.8e-156 555.8 326 85.6
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.8e-151 538.9 301 87.7
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-148 530.8 299 86.6
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 4.4e-144 515.8 310 81.3
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.7e-143 513.8 435 60.5
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-142 511.1 299 86.0
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.1e-139 501.1 329 76.9
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.5e-139 498.8 302 79.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.5e-136 490.7 428 60.0
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.8e-135 486.5 436 57.6
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 7.2e-131 471.9 299 79.6
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-124 451.1 272 82.4
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 1.4e-121 441.0 273 80.2
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 4.0e-121 439.5 423 56.0
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.1e-105 386.7 431 46.2
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 5.1e-100 369.4 238 79.4
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.1e-90 337.4 435 43.7
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.1e-78 298.5 175 84.6
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.7e-71 274.6 360 43.3
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.6e-56 224.2 137 82.5
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.2e-54 216.1 186 64.0
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 3.9e-44 183.7 126 70.6
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.1e-44 183.3 129 72.9
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 5.7e-43 179.9 184 52.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.7e-42 177.2 119 72.3
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.6e-40 171.0 120 70.8
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.2e-37 162.2 96 80.2
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 9.1e-33 146.0 90 80.0
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.7e-26 125.2 80 68.8
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.7e-26 125.2 80 68.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 8.2e-26 122.9 79 69.6
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 8.2e-26 122.9 80 68.8
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 3.1e-25 120.9 79 68.4
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-24 119.0 79 67.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 3.5e-24 117.5 76 68.4
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 5.0e-23 113.6 78 71.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 8.5e-23 112.8 82 73.2
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 4.4e-19 100.5 66 65.2
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 4.4e-19 100.5 66 65.2
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 9.8e-19 99.4 66 63.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 9.1e-17 92.8 53 83.0
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 9.1e-17 92.8 254 29.9


User provided reference genes

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