Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0066700 Rhododendron simsii HOM05D000244 ORTHO05D004919 2.4e-50 201.8 97 100.0
Rhsim06G0072500 Rhododendron simsii HOM05D000244 ORTHO05D004919 2.8e-19 98.6 77 70.1
Sopen00g009810 Solanum pennellii HOM05D000244 ORTHO05D004919 4.6e-14 81.3 108 46.3
Solyc04g076220.3 Solanum lycopersicum HOM05D000244 ORTHO05D004919 6.0e-14 80.9 108 45.4
CAN.G475.42 Capsicum annuum HOM05D000244 ORTHO05D004919 1.0e-13 80.1 108 45.4
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.0e-13 80.1 71 59.2
PGSC0003DMG400009365 Solanum tuberosum HOM05D000244 ORTHO05D004919 1.3e-13 79.7 108 46.3
Peaxi162Scf00979g00022 Petunia axillaris HOM05D000244 ORTHO05D004919 1.1e-12 76.6 108 43.5
Nitab4.5_0008771g0010 Nicotiana tabacum HOM05D000244 ORTHO05D004919 3.3e-12 75.1 109 42.2
BcaB01g02948 Brassica carinata HOM05D000244 ORTHO05D004919 9.7e-12 73.6 107 42.1
Dinv44851 Davidia involucrata HOM05D000244 ORTHO05D004919 9.7e-12 73.6 106 41.5
Hma1.2p1_0125F.1_g058970 Hydrangea macrophylla HOM05D000244 ORTHO05D004919 9.7e-12 73.6 107 43.0
BcaC01g04851 Brassica carinata HOM05D000244 ORTHO05D004919 1.3e-11 73.2 107 41.1
A03p27490 Brassica napus HOM05D000244 ORTHO05D004919 1.3e-11 73.2 107 41.1
C03p33150 Brassica napus HOM05D000244 ORTHO05D004919 1.3e-11 73.2 107 41.1
BolC3t15640H Brassica oleracea HOM05D000244 ORTHO05D004919 1.3e-11 73.2 107 41.1
BraA03t11962Z Brassica rapa HOM05D000244 ORTHO05D004919 1.3e-11 73.2 107 41.1
Nitab4.5_0000131g0370 Nicotiana tabacum HOM05D000244 ORTHO05D004919 1.3e-11 73.2 109 42.2
THA.LOC104824569 Tarenaya hassleriana HOM05D000244 ORTHO05D004919 1.3e-11 73.2 106 40.6
CARHR259140 Cardamine hirsuta HOM05D000244 ORTHO05D004919 1.6e-11 72.8 107 43.0
Sp6g10970 Schrenkiella parvula HOM05D000244 ORTHO05D004919 1.6e-11 72.8 107 43.0
Aa31sc195G10 Aethionema arabicum HOM05D000244 ORTHO05D004919 2.2e-11 72.4 107 43.0
Actinidia30823 Actinidia chinensis HOM05D000244 ORTHO05D004919 2.8e-11 72.0 102 42.2
Thhalv10009678m.g Eutrema salsugineum HOM05D000244 ORTHO05D004919 2.8e-11 72.0 106 41.5
AL8G23630 Arabidopsis lyrata HOM05D000244 ORTHO05D004919 3.7e-11 71.6 107 43.0
AT5G49700 Arabidopsis thaliana HOM05D000244 ORTHO05D004919 3.7e-11 71.6 107 43.0
CiPaw.08G054900 Carya illinoinensis HOM05D000244 ORTHO05D004919 3.7e-11 71.6 106 42.5
Carub.0008s0958 Capsella rubella HOM05D000244 ORTHO05D004919 4.8e-11 71.2 108 42.6
Sed0019274 Sechium edule HOM05D000244 ORTHO05D004919 4.8e-11 71.2 99 42.4
Manes.18G059800 Manihot esculenta HOM05D000244 ORTHO05D004919 1.1e-10 70.1 100 41.0
CSS0028409 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D004919 1.4e-10 69.7 94 43.6
MD15G1384100 Malus domestica HOM05D000244 ORTHO05D004919 1.4e-10 69.7 103 40.8
Prupe.1G530300 Prunus persica HOM05D000244 ORTHO05D004919 1.4e-10 69.7 103 40.8
THA.LOC104803426 Tarenaya hassleriana HOM05D000244 ORTHO05D004919 1.4e-10 69.7 107 42.1
Cfa013688 Carpinus fangiana HOM05D000244 ORTHO05D004919 1.8e-10 69.3 107 40.2
Ciclev10001847m.g Citrus clementina HOM05D000244 ORTHO05D004919 1.8e-10 69.3 93 44.1
Haze_22329 Corylus avellana HOM05D000244 ORTHO05D004919 1.8e-10 69.3 107 40.2
Lsat_1_v5_gn_9_75400 Lactuca sativa HOM05D000244 ORTHO05D004919 2.4e-10 68.9 106 38.7
TAR381G0576 Trochodendron aralioides HOM05D000244 ORTHO05D004919 2.4e-10 68.9 101 40.6
Gohir.A02G078700 Gossypium hirsutum HOM05D000244 ORTHO05D004919 4.1e-10 68.2 100 41.0
Gohir.D02G085900 Gossypium hirsutum HOM05D000244 ORTHO05D004919 4.1e-10 68.2 100 41.0
Gorai.005G096700 Gossypium raimondii HOM05D000244 ORTHO05D004919 4.1e-10 68.2 100 41.0
Potri.002G105000 Populus trichocarpa HOM05D000244 ORTHO05D004919 4.1e-10 68.2 100 40.0
Sabra05G0120300 Salix brachista HOM05D000244 ORTHO05D004919 4.1e-10 68.2 99 40.4
COL.COLO4_35218 Corchorus olitorius HOM05D000244 ORTHO05D004919 5.3e-10 67.8 100 41.0
Carub.0001s1421 Capsella rubella HOM05D000244 ORTHO05D004919 1.2e-09 66.6 94 42.6
Manes.02G145600 Manihot esculenta HOM05D000244 ORTHO05D004919 1.2e-09 66.6 100 40.0
Nn1g05541 Nelumbo nucifera HOM05D000244 ORTHO05D004919 1.2e-09 66.6 106 42.5
Atru.chr13.1028 Acer truncatum HOM05D000244 ORTHO05D004919 1.5e-09 66.2 93 40.9
BcaB02g06503 Brassica carinata HOM05D000244 ORTHO05D004919 1.5e-09 66.2 91 44.0
Cpa.g.sc21.4 Carica papaya HOM05D000244 ORTHO05D004919 1.5e-09 66.2 92 42.4
ClCG08G011720 Citrullus lanatus HOM05D000244 ORTHO05D004919 1.5e-09 66.2 106 42.5
Lj4A89T40 Lonicera japonica HOM05D000244 ORTHO05D004919 2.0e-09 65.9 107 40.2
Nn5g29909 Nelumbo nucifera HOM05D000244 ORTHO05D004919 2.0e-09 65.9 106 42.5
Oeu049766.1 Olea europaea HOM05D000244 ORTHO05D004919 2.0e-09 65.9 96 40.6
Oeu049767.1 Olea europaea HOM05D000244 ORTHO05D004919 2.0e-09 65.9 96 40.6
Cc10_g15800 Coffea canephora HOM05D000244 ORTHO05D004919 2.6e-09 65.5 93 40.9
PSO017G6431 Papaver somniferum HOM05D000244 ORTHO05D004919 2.6e-09 65.5 96 39.6
Potri.005G156700 Populus trichocarpa HOM05D000244 ORTHO05D004919 2.6e-09 65.5 99 40.4
Thecc.08G069500 Theobroma cacao HOM05D000244 ORTHO05D004919 2.6e-09 65.5 100 39.0
MSTRG.24436 Avicennia marina HOM05D000244 ORTHO05D004919 3.4e-09 65.1 94 42.6
BcaC05g25357 Brassica carinata HOM05D000244 ORTHO05D004919 3.4e-09 65.1 91 42.9
C05p12420 Brassica napus HOM05D000244 ORTHO05D004919 3.4e-09 65.1 91 42.9
BolC5t29988H Brassica oleracea HOM05D000244 ORTHO05D004919 3.4e-09 65.1 91 42.9
A06p10550 Brassica napus HOM05D000244 ORTHO05D004919 4.5e-09 64.7 91 42.9
BraA06t24235Z Brassica rapa HOM05D000244 ORTHO05D004919 4.5e-09 64.7 91 42.9
CiPaw.07G166600 Carya illinoinensis HOM05D000244 ORTHO05D004919 4.5e-09 64.7 106 41.5
DCAR_009569 Daucus carota HOM05D000244 ORTHO05D004919 4.5e-09 64.7 91 38.5
QL09p017582 Quercus lobata HOM05D000244 ORTHO05D004919 4.5e-09 64.7 94 43.6
AL1G26390 Arabidopsis lyrata HOM05D000244 ORTHO05D004919 5.9e-09 64.3 105 40.0
CSS0024913 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D004919 5.9e-09 64.3 92 41.3
ECA232G4764 Erigeron canadensis HOM05D000244 ORTHO05D004919 5.9e-09 64.3 91 41.8
HanXRQChr10g0303951 Helianthus annuus HOM05D000244 ORTHO05D004919 5.9e-09 64.3 108 38.9
Sabra02G0082400 Salix brachista HOM05D000244 ORTHO05D004919 5.9e-09 64.3 100 39.0
Sc23g0000640 Simmondsia chinensis HOM05D000244 ORTHO05D004919 5.9e-09 64.3 106 36.8
CARHR014940 Cardamine hirsuta HOM05D000244 ORTHO05D004919 7.6e-09 63.9 108 38.9
MD08G1196300 Malus domestica HOM05D000244 ORTHO05D004919 7.6e-09 63.9 106 38.7
PGR031G2842 Punica granatum HOM05D000244 ORTHO05D004919 7.6e-09 63.9 110 37.3
EL10Ac1g01065 Beta vulgaris HOM05D000244 ORTHO05D004919 1.0e-08 63.5 106 40.6
MELO3C011096.2 Cucumis melo HOM05D000244 ORTHO05D004919 1.0e-08 63.5 106 39.6
PSO170G2434 Papaver somniferum HOM05D000244 ORTHO05D004919 1.0e-08 63.5 96 38.5
RcHm_v2.0_Chr7g0236871 Rosa chinensis HOM05D000244 ORTHO05D004919 1.0e-08 63.5 91 41.8
vmacro04657 Vaccinium macrocarpon HOM05D000244 ORTHO05D004919 1.0e-08 63.5 108 39.8
ClCG11G014540 Citrullus lanatus HOM05D000244 ORTHO05D004919 1.3e-08 63.2 108 37.0
CsaV3_2G030340 Cucumis sativus L. HOM05D000244 ORTHO05D004919 1.3e-08 63.2 107 39.3
Duzib093G0476 Durio zibethinus HOM05D000244 ORTHO05D004919 2.2e-08 62.4 100 39.0
Gohir.A06G032612 Gossypium hirsutum HOM05D000244 ORTHO05D004919 2.2e-08 62.4 102 39.2
Nitab4.5_0000354g0170 Nicotiana tabacum HOM05D000244 ORTHO05D004919 2.2e-08 62.4 112 36.6
Oeu020241.1 Olea europaea HOM05D000244 ORTHO05D004919 2.2e-08 62.4 93 39.8
PGR042G1021 Punica granatum HOM05D000244 ORTHO05D004919 2.2e-08 62.4 102 36.3
TWI36G1033 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 2.2e-08 62.4 101 39.6
Duzib041G0591 Durio zibethinus HOM05D000244 ORTHO05D004919 2.9e-08 62.0 100 40.0
FAN08G2285 Fragaria x ananassa HOM05D000244 ORTHO05D004919 2.9e-08 62.0 106 40.6
Actinidia19636 Actinidia chinensis HOM05D000244 ORTHO05D004919 3.8e-08 61.6 93 44.1
Aqoxy5G01313 Aquilegia oxysepala HOM05D000244 ORTHO05D004919 3.8e-08 61.6 103 39.8
CAN.G806.10 Capsicum annuum HOM05D000244 ORTHO05D004919 3.8e-08 61.6 114 31.6
Gohir.D06G032000 Gossypium hirsutum HOM05D000244 ORTHO05D004919 3.8e-08 61.6 102 39.2
Psat5g046320 Pisum sativum HOM05D000244 ORTHO05D004919 3.8e-08 61.6 107 38.3
MSTRG.22172 Avicennia marina HOM05D000244 ORTHO05D004919 5.0e-08 61.2 107 35.5
FAN13G0285 Fragaria x ananassa HOM05D000244 ORTHO05D004919 5.0e-08 61.2 107 38.3
Gohir.A05G220300 Gossypium hirsutum HOM05D000244 ORTHO05D004919 5.0e-08 61.2 101 37.6
Gorai.009G230300 Gossypium raimondii HOM05D000244 ORTHO05D004919 5.0e-08 61.2 101 37.6
FvH4_5g35490 Fragaria vesca HOM05D000244 ORTHO05D004919 6.5e-08 60.8 107 38.3
FAN04G1436 Fragaria x ananassa HOM05D000244 ORTHO05D004919 6.5e-08 60.8 107 38.3
Lsat_1_v5_gn_6_106180 Lactuca sativa HOM05D000244 ORTHO05D004919 6.5e-08 60.8 96 39.6
MBI06_g36040_MAGBIO Magnolia biondii HOM05D000244 ORTHO05D004919 6.5e-08 60.8 111 37.8
CDE06G0349 Ceratophyllum demersum HOM05D000344 ORTHO05D000934 8.5e-08 60.5 102 38.2
Ca_15997_v3 Cicer arietinum L. HOM05D000244 ORTHO05D004919 8.5e-08 60.5 91 41.8
Duzib116G0561 Durio zibethinus HOM05D000244 ORTHO05D004919 8.5e-08 60.5 100 38.0
Gohir.D05G223100 Gossypium hirsutum HOM05D000244 ORTHO05D004919 8.5e-08 60.5 101 37.6
LjContig00408g0000570 Lotus japonicus HOM05D000244 ORTHO05D004919 8.5e-08 60.5 107 40.2
Potri.002G003800 Populus trichocarpa HOM05D000244 ORTHO05D000179 8.5e-08 60.5 92 43.5
SGA_v2.0_scaffold28G11895 Striga asiatica HOM05D000244 ORTHO05D004919 8.5e-08 60.5 93 38.7
Lalb_Chr11g0065051 Lupinus albus HOM05D000244 ORTHO05D004919 1.1e-07 60.1 107 37.4
MBI13_g42344_MAGBIO Magnolia biondii HOM05D000244 ORTHO05D000179 1.1e-07 60.1 99 41.4
CDE03G0340 Ceratophyllum demersum HOM05D000244 ORTHO05D004919 1.4e-07 59.7 102 37.3
Gorai.010G035300 Gossypium raimondii HOM05D000244 ORTHO05D004919 1.4e-07 59.7 102 38.2
Lj4P736T15 Lonicera japonica HOM05D000244 ORTHO05D004919 1.4e-07 59.7 93 39.8
TPR.G26048 Trifolium pratense HOM05D000244 ORTHO05D004919 1.4e-07 59.7 91 40.7
TWI12G1174 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 1.4e-07 59.7 101 38.6
TWI56G0440 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 1.4e-07 59.7 101 36.6
AT1G14490 Arabidopsis thaliana HOM05D000244 ORTHO05D004919 1.9e-07 59.3 105 39.0
arahy.Tifrunner.gnm1.ann1.6X9KLT Arachis hypogaea HOM05D000244 ORTHO05D004919 1.9e-07 59.3 91 39.6
CANSAT25G2988 Cannabis sativa HOM05D000244 ORTHO05D004919 1.9e-07 59.3 88 39.8
DCAR_020018 Daucus carota HOM05D000244 ORTHO05D004919 1.9e-07 59.3 107 37.4
FAN18G1982 Fragaria x ananassa HOM05D000244 ORTHO05D004919 1.9e-07 59.3 107 37.4
TAR628G0674 Trochodendron aralioides HOM05D000244 ORTHO05D004919 1.9e-07 59.3 106 38.7
MELO3C003526.2 Cucumis melo HOM05D000244 ORTHO05D004919 2.5e-07 58.9 108 34.3
Glyma.04G091600 Glycine max HOM05D000244 ORTHO05D004919 3.2e-07 58.5 91 40.7
Lalb_Chr10g0102721 Lupinus albus HOM05D000244 ORTHO05D004919 3.2e-07 58.5 92 40.2
ECA246G0984 Erigeron canadensis HOM05D000244 ORTHO05D000002 4.2e-07 58.2 105 39.0
Migut.N02869 Erythranthe guttata HOM05D000244 ORTHO05D004919 4.2e-07 58.2 92 38.0
Glyma.06G093400 Glycine max HOM05D000244 ORTHO05D004919 4.2e-07 58.2 91 40.7
Phvul.008G181100 Phaseolus vulgaris HOM05D000244 ORTHO05D004919 4.2e-07 58.2 90 42.2
Glyma.02G213500 Glycine max HOM05D000244 ORTHO05D004919 5.5e-07 57.8 94 39.4
Lalb_Chr04g0252891 Lupinus albus HOM05D000244 ORTHO05D004919 5.5e-07 57.8 101 38.6
Medtr3g100470 Medicago truncatula HOM05D000244 ORTHO05D004919 5.5e-07 57.8 104 38.5
Sabra02G0002700 Salix brachista HOM05D000244 ORTHO05D000179 5.5e-07 57.8 92 42.4
VMungo1076G0001 Vigna mungo HOM05D000244 ORTHO05D004919 5.5e-07 57.8 90 42.2
CiPaw.07G132600 Carya illinoinensis HOM05D000244 ORTHO05D000179 7.2e-07 57.4 93 40.9
Sopen12g029980 Solanum pennellii HOM05D000244 ORTHO05D004919 7.2e-07 57.4 116 33.6
Manes.05G129000 Manihot esculenta HOM05D000244 ORTHO05D000179 9.3e-07 57.0 93 39.8
Nitab4.5_0001607g0050 Nicotiana tabacum HOM05D000244 ORTHO05D004919 9.3e-07 57.0 110 35.5
Ca_05426_v3 Cicer arietinum L. HOM05D000244 ORTHO05D004919 1.2e-06 56.6 91 39.6
Medtr5g066020 Medicago truncatula HOM05D000244 ORTHO05D004919 1.2e-06 56.6 94 37.2
PGSC0003DMG400009926 Solanum tuberosum HOM05D000244 ORTHO05D000179 1.2e-06 56.6 93 39.8
CiPaw.08G077400 Carya illinoinensis HOM05D000244 ORTHO05D000179 1.6e-06 56.2 94 40.4
DCAR_023019 Daucus carota HOM05D000244 ORTHO05D000179 1.6e-06 56.2 93 39.8
Migut.C00351 Erythranthe guttata HOM05D000244 ORTHO05D000179 1.6e-06 56.2 93 40.9
Psat2g066000 Pisum sativum HOM05D000244 ORTHO05D004919 1.6e-06 56.2 93 36.6
Rhsim06G0002500 Rhododendron simsii HOM05D000244 ORTHO05D000179 1.6e-06 56.2 93 39.8
Solyc04g082810.4 Solanum lycopersicum HOM05D000244 ORTHO05D000179 1.6e-06 56.2 90 40.0
Sopen04g036450 Solanum pennellii HOM05D000244 ORTHO05D000179 1.6e-06 56.2 90 40.0
HPP92_013977 Vanilla planifolia HOM05D000244 ORTHO05D000179 1.6e-06 56.2 91 36.3
VMungo1309G2380 Vigna mungo HOM05D000244 ORTHO05D004919 1.6e-06 56.2 91 39.6
Phvul.009G144300 Phaseolus vulgaris HOM05D000244 ORTHO05D004919 2.1e-06 55.8 91 38.5
QL02p015894 Quercus lobata HOM05D000244 ORTHO05D000179 2.1e-06 55.8 91 39.6
Sp1g12860 Schrenkiella parvula HOM05D000244 ORTHO05D004919 2.1e-06 55.8 62 50.0
TAR376G0027 Trochodendron aralioides HOM05D000244 ORTHO05D004919 2.1e-06 55.8 106 37.7
Solyc12g087950.1 Solanum lycopersicum HOM05D000244 ORTHO05D004919 2.7e-06 55.5 116 31.9
HanXRQChr10g0278211 Helianthus annuus HOM05D000244 ORTHO05D004919 3.6e-06 55.1 109 33.9
Nn5g31058 Nelumbo nucifera HOM05D000244 ORTHO05D000179 3.6e-06 55.1 93 39.8
Potri.005G257200 Populus trichocarpa HOM05D000244 ORTHO05D000179 3.6e-06 55.1 92 40.2
PGR083G2658 Punica granatum HOM05D000244 ORTHO05D000179 3.6e-06 55.1 93 38.7
Sed0023627 Sechium edule HOM05D000244 ORTHO05D004919 3.6e-06 55.1 112 33.9
unitig_744.g24106 Utricularia gibba HOM05D000244 ORTHO05D004919 3.6e-06 55.1 94 38.3
ATR0022G007 Amborella trichopoda HOM05D000244 ORTHO05D004919 4.6e-06 54.7 105 34.3
Cfa014144 Carpinus fangiana HOM05D000244 ORTHO05D000179 4.6e-06 54.7 93 37.6
Haze_22868 Corylus avellana HOM05D000244 ORTHO05D000179 4.6e-06 54.7 93 37.6
Oeu035761.1 Olea europaea HOM05D000244 ORTHO05D000179 4.6e-06 54.7 93 37.6
PGSC0003DMG400002047 Solanum tuberosum HOM05D000244 ORTHO05D004919 4.6e-06 54.7 91 34.1
Cpa.g.sc26.5 Carica papaya HOM05D000244 ORTHO05D000179 6.1e-06 54.3 93 39.8
Peaxi162Scf00385g00411 Petunia axillaris HOM05D000244 ORTHO05D000179 6.1e-06 54.3 93 36.6
Rhsim07G0211500 Rhododendron simsii HOM05D000244 ORTHO05D004919 6.1e-06 54.3 75 44.0
TPR.G16028 Trifolium pratense HOM05D000244 ORTHO05D004919 6.1e-06 54.3 88 37.5
Actinidia15529 Actinidia chinensis HOM05D000244 ORTHO05D000179 7.9e-06 53.9 93 38.7
Ciclev10001818m.g Citrus clementina HOM05D000244 ORTHO05D000179 7.9e-06 53.9 90 40.0
Dinv23324 Davidia involucrata HOM05D000244 ORTHO05D000179 7.9e-06 53.9 92 39.1
Nitab4.5_0007096g0030 Nicotiana tabacum HOM05D000244 ORTHO05D000179 7.9e-06 53.9 93 38.7
Os09g0464300 Oryza sativa ssp. japonica HOM05D000244 ORTHO05D004919 7.9e-06 53.9 105 34.3
Prupe.5G004600 Prunus persica HOM05D000244 ORTHO05D000179 7.9e-06 53.9 89 40.4
Sed0000098 Sechium edule HOM05D000244 ORTHO05D000179 7.9e-06 53.9 89 40.4


User provided reference genes

Program Settings