Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 1.8e-122 442.6 215 100.0
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 1.5e-118 429.5 215 98.1
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 6.1e-91 337.8 214 75.2
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 4.1e-87 325.1 217 72.8
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 7.2e-84 314.3 217 71.0
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 6.1e-83 311.2 217 69.1
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.4e-82 310.1 199 76.9
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 5.2e-82 308.1 217 67.3
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 6.3e-80 301.2 217 67.3
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 5.9e-78 294.7 214 68.2
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 6.5e-77 291.2 217 66.8
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 4.2e-76 288.5 217 65.0
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 4.2e-76 288.5 217 65.0
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 5.5e-76 288.1 193 71.0
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 1.6e-75 286.6 217 65.9
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 1.6e-75 286.6 217 64.5
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 1.6e-75 286.6 219 66.7
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 2.1e-75 286.2 204 71.1
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 2.7e-75 285.8 219 64.8
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 1.0e-74 283.9 217 64.5
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 2.3e-74 282.7 214 66.4
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 2.0e-73 279.6 217 63.1
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 2.6e-73 279.3 217 63.6
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 3.4e-73 278.9 217 62.7
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 1.3e-72 276.9 222 65.3
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 2.2e-72 276.2 217 62.7
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.2e-72 276.2 217 61.3
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 3.7e-72 275.4 217 63.1
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.8e-72 275.0 217 62.7
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 4.8e-72 275.0 219 61.2
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 4.8e-72 275.0 218 65.1
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 6.3e-72 274.6 215 63.7
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 8.3e-72 274.2 220 63.6
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 1.1e-71 273.9 215 63.7
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 1.8e-71 273.1 197 64.5
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.8e-71 273.1 217 63.6
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 3.1e-71 272.3 214 63.1
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 3.1e-71 272.3 214 63.1
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 3.1e-71 272.3 215 63.3
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 7.0e-71 271.2 217 63.1
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 7.0e-71 271.2 219 64.8
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 1.2e-70 270.4 217 62.2
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 2.0e-70 269.6 174 74.7
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.0e-70 269.6 214 63.1
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 2.7e-70 269.2 217 61.8
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 3.5e-70 268.9 214 61.2
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 4.5e-70 268.5 216 62.0
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 4.5e-70 268.5 216 63.0
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 4.5e-70 268.5 215 63.7
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 5.9e-70 268.1 218 63.3
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.0e-69 267.3 213 63.8
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 1.3e-69 266.9 217 59.9
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.3e-69 266.9 214 60.3
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 2.9e-69 265.8 214 62.1
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 1.1e-68 263.8 223 58.7
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.9e-68 263.1 217 60.8
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 5.5e-68 261.5 218 59.2
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 7.2e-68 261.2 217 60.4
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 2.7e-67 259.2 217 59.0
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 3.6e-67 258.8 221 59.3
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 4.7e-67 258.5 190 66.3
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.0e-66 257.3 194 66.0
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 3.0e-66 255.8 177 68.9
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 4.0e-66 255.4 214 60.3
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 2.0e-65 253.1 215 58.6
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 3.7e-64 248.8 191 64.4
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 6.3e-64 248.1 216 56.5
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 1.2e-62 243.8 224 57.1
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 7.7e-62 241.1 216 55.6
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 1.0e-61 240.7 215 57.2
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 2.3e-61 239.6 215 56.3
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 3.8e-61 238.8 215 57.2
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 3.3e-60 235.7 215 57.2
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 3.3e-60 235.7 217 58.5
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 4.3e-60 235.3 215 57.2
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 4.3e-60 235.3 215 57.2
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 5.6e-60 235.0 219 57.1
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.2e-59 233.8 218 57.3
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 2.8e-59 232.6 215 55.8
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 1.0e-58 230.7 214 54.7
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 1.0e-58 230.7 212 54.2
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 1.4e-58 230.3 218 56.4
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.8e-58 229.9 220 55.0
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 1.5e-57 226.9 214 55.1
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 1.7e-56 223.4 215 54.4
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 6.4e-56 221.5 196 60.7
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 2.4e-55 219.5 215 51.2
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 4.6e-54 215.3 219 53.4
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.9e-52 209.9 219 50.2
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 5.6e-52 208.4 141 68.1
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 1.4e-47 193.7 159 59.7
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 2.3e-45 186.4 158 53.2
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 1.5e-44 183.7 162 57.4
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 1.9e-39 166.8 134 53.7
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 5.4e-39 165.2 149 51.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 2.7e-38 162.9 230 42.6
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 7.8e-38 161.4 143 49.0
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 2.3e-37 159.8 144 57.6
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 3.1e-34 149.4 152 46.7
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.3e-32 144.1 138 53.6
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 4.9e-32 142.1 139 47.5
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 6.2e-27 125.2 82 72.0
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 1.1e-26 124.4 145 41.4
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 1.4e-18 97.4 52 76.9
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 1.4e-15 87.4 148 35.8
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.0e-13 81.3 54 74.1
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 1.4e-10 70.9 44 72.7
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 7.9e-06 55.1 71 39.4


User provided reference genes

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