Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 0.0e+00 1496.5 814 100.0
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 0.0e+00 1142.9 880 73.8
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 0.0e+00 1139.8 838 78.3
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.7e-298 1029.2 871 66.7
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 7.7e-296 1020.4 849 69.4
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.4e-292 1009.6 888 67.0
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.4e-275 951.4 877 62.0
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.6e-267 925.6 870 62.0
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 6.0e-264 914.4 857 61.1
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.8e-261 905.6 860 60.6
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 3.5e-256 888.6 862 59.5
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 2.6e-251 872.5 866 59.4
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.8e-251 871.3 862 58.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.7e-250 868.6 883 59.9
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 8.6e-247 857.4 860 57.8
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 6.2e-245 851.3 868 57.3
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 6.2e-245 851.3 864 57.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.1e-244 849.0 849 57.6
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 6.8e-244 847.8 871 58.7
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 9.9e-243 844.0 859 57.9
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 4.9e-242 841.6 866 56.5
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 4.2e-241 838.6 808 59.0
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 1.6e-240 836.6 869 56.2
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.0e-239 832.4 859 57.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 6.6e-239 831.2 874 55.9
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 4.3e-238 828.6 856 57.1
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 5.6e-238 828.2 859 55.9
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.3e-237 827.0 871 56.6
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 6.2e-237 824.7 890 54.8
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 2.0e-235 819.7 811 57.2
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 8.4e-234 814.3 862 55.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 1.1e-233 813.9 816 58.6
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 3.5e-232 808.9 868 57.0
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 3.5e-232 808.9 866 56.4
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.0e-231 807.4 872 56.5
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 3.0e-231 805.8 867 56.9
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 2.8e-229 799.3 872 54.1
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.2e-227 793.9 870 53.9
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 5.8e-227 791.6 867 55.1
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 9.9e-227 790.8 867 55.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 2.9e-226 789.3 865 54.9
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.2e-224 783.9 867 55.6
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.9e-223 778.9 864 55.4
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 5.1e-223 778.5 863 54.2
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 1.1e-222 777.3 867 54.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 2.5e-222 776.2 869 54.4
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 7.4e-222 774.6 894 53.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 4.8e-221 771.9 870 53.4
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 8.1e-221 771.2 883 53.8
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.4e-220 769.6 863 55.2
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.0e-219 766.5 863 55.2
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.7e-218 763.5 867 53.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 2.2e-218 763.1 820 54.9
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-217 760.8 867 52.9
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 7.1e-217 758.1 860 53.5
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 3.5e-216 755.7 858 53.3
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.5e-214 750.4 874 52.2
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 9.6e-214 747.7 871 51.8
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 4.8e-213 745.3 862 53.5
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 6.3e-213 745.0 682 62.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-212 744.2 871 52.2
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 2.0e-211 740.0 873 52.2
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 4.5e-211 738.8 869 52.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.0e-210 737.6 855 52.2
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 5.0e-210 735.3 869 52.8
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-209 734.2 748 58.3
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-209 734.2 777 55.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.4e-209 733.8 869 52.5
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.9e-209 733.4 860 52.7
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-207 727.2 869 52.4
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.5e-206 723.8 871 52.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.8e-205 719.5 814 52.8
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 3.7e-205 719.2 768 54.9
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-205 719.2 869 51.6
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.4e-204 716.5 872 51.0
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 3.1e-204 716.1 816 54.3
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.3e-204 715.3 812 52.6
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 1.2e-203 714.1 879 50.6
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.2e-203 714.1 815 52.6
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.8e-202 709.1 830 50.5
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.0e-199 701.0 844 51.7
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.0e-199 699.5 856 50.8
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 8.8e-199 698.0 835 52.9
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.5e-198 697.2 862 50.5
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 6.3e-197 691.8 861 49.2
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 2.4e-196 689.9 866 49.2
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 3.1e-196 689.5 825 50.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.2e-195 687.6 860 50.6
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 4.5e-195 685.6 828 50.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 7.7e-195 684.9 829 51.0
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 3.6e-192 676.0 831 49.8
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.8e-191 673.7 842 49.2
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 3.9e-191 672.5 814 49.9
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.3e-189 667.5 808 49.4
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.8e-188 663.7 860 48.3
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 3.1e-188 662.9 831 49.6
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.1e-185 654.4 829 48.9
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.3e-181 641.0 773 49.9
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.9e-179 632.1 810 48.3
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-178 631.3 831 47.1
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.0e-178 629.0 607 58.5
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 6.8e-175 618.6 834 47.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 1.5e-174 617.5 678 52.8
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-174 616.7 839 46.6
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 9.8e-174 614.8 846 45.6
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.8e-172 610.5 855 45.3
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 5.5e-169 599.0 850 46.4
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.4e-164 583.6 802 46.5
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 9.2e-164 581.6 580 60.5
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 4.5e-163 579.3 798 48.2
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.7e-162 577.4 863 44.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.9e-162 576.6 801 46.2
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 6.6e-162 575.5 590 56.9
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.2e-160 571.2 804 46.4
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.6e-158 563.5 806 47.4
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 2.2e-157 560.5 522 63.2
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 9.2e-148 528.5 853 44.5
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 1.4e-140 504.6 766 44.1
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.1e-140 503.1 1001 36.8
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.6e-139 501.1 401 72.1
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.1e-127 461.8 476 54.8
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.9e-114 416.8 696 42.5
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 5.6e-113 412.9 1001 32.9
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.1e-112 411.0 868 36.6
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 1.1e-105 388.7 914 34.0
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 1.2e-99 368.6 341 59.5
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.3e-98 365.2 441 49.4
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.7e-98 362.5 248 75.4
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.7e-97 359.8 285 66.3
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 1.4e-95 355.1 354 56.5
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 3.1e-95 354.0 942 32.5
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-85 321.6 820 33.5
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.7e-85 321.6 820 33.5
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 8.5e-85 319.3 790 33.7
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 7.0e-71 273.1 977 28.2
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.0e-65 255.0 172 72.1
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.3e-61 242.3 156 74.4
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 2.0e-57 228.4 735 30.7
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.4e-57 227.3 800 29.4
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.0e-53 213.8 328 49.1
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.1e-51 208.4 167 60.5
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-48 198.4 353 41.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 3.7e-48 197.6 372 40.9
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 6.3e-48 196.8 399 38.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 2.4e-47 194.9 413 35.6
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-46 192.2 125 73.6
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 8.6e-45 186.4 381 38.8
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.5e-44 184.9 175 63.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 9.5e-44 183.0 381 38.6
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-42 179.1 316 38.9
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.0e-42 177.6 170 56.5
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 8.3e-40 169.9 341 37.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.3e-37 161.8 165 52.1
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.0e-37 160.6 665 27.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 8.6e-37 159.8 131 61.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 5.2e-34 150.6 189 49.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 1.2e-33 149.4 234 43.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-33 149.4 165 49.1
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 2.4e-31 141.7 197 44.2
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-30 139.0 166 50.6
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 7.8e-30 136.7 123 57.7
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 6.6e-29 133.7 954 24.0
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.0e-25 122.1 129 51.9
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.3e-24 119.4 140 43.6
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.7e-24 119.0 122 59.0
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 2.3e-21 108.6 288 37.5
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.1e-18 99.8 287 31.7
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 9.9e-17 93.2 268 32.1
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-16 92.4 287 33.1
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.2e-15 88.2 136 44.1
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 5.4e-15 87.4 82 57.3
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.9e-13 81.3 200 36.0
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 5.6e-12 77.4 281 31.0
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 9.6e-12 76.6 281 31.7
Actinidia24816 Actinidia chinensis HOM05D056392 ORTHO05D056303 9.0e-10 70.1 125 44.8
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.1e-07 63.2 119 36.1
CAN.G443.2 Capsicum annuum HOM05D000880 ORTHO05D004760 4.2e-07 61.2 50 58.0
Cfa021652 Carpinus fangiana HOM05D000880 ORTHO05D004760 9.3e-07 60.1 55 56.4
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.1e-06 58.9 166 34.9


User provided reference genes

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