Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.9e-123 446.0 258 100.0
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.5e-115 419.1 285 88.1
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 5.6e-107 391.3 284 82.4
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.4e-102 376.7 276 84.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 4.9e-87 325.1 290 65.5
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.9e-79 299.3 290 61.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.8e-79 298.9 290 61.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 3.2e-78 295.8 289 63.3
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.2e-77 293.9 293 60.1
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.5e-75 287.0 292 58.6
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 4.3e-75 285.4 232 69.0
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.0e-73 278.9 283 58.7
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.6e-72 276.2 275 68.0
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.6e-72 276.2 272 60.3
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 9.9e-72 274.2 289 57.8
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 9.9e-72 274.2 290 59.7
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.2e-71 273.1 283 58.0
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.2e-71 273.1 283 58.0
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.7e-69 266.2 291 55.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.0e-68 262.7 240 62.9
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 6.6e-68 261.5 264 64.4
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.9e-67 260.0 293 54.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 7.3e-67 258.1 283 55.8
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.3e-66 257.3 275 59.6
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.1e-66 256.5 283 57.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 3.6e-66 255.8 288 55.9
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.4e-65 253.8 295 54.6
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 5.3e-65 251.9 294 56.5
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 1.2e-64 250.8 265 58.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.5e-64 250.4 272 61.4
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.0e-64 250.0 299 54.2
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.0e-64 250.0 291 54.0
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 4.5e-64 248.8 288 55.9
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 7.6e-64 248.1 267 61.0
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.3e-63 247.3 285 55.8
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.3e-63 247.3 272 56.6
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.3e-63 247.3 288 55.6
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.3e-63 247.3 296 54.7
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 1.3e-63 247.3 296 54.7
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.7e-63 246.9 282 55.0
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.7e-63 246.9 301 55.1
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.7e-63 246.9 265 60.8
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.9e-63 246.1 296 54.7
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.8e-63 245.7 266 57.5
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 6.4e-63 245.0 283 55.8
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 6.4e-63 245.0 266 58.6
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 8.4e-63 244.6 288 53.5
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.1e-62 244.2 286 55.2
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.4e-62 243.8 265 57.0
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.4e-62 243.8 296 54.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.9e-62 243.4 266 58.3
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.4e-62 243.0 272 55.1
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 5.5e-62 241.9 266 57.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.2e-61 240.7 271 54.2
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.6e-61 240.4 286 53.8
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 2.7e-61 239.6 286 53.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.6e-61 238.8 241 58.9
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.6e-61 238.8 241 58.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.9e-61 238.0 265 54.3
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.0e-60 237.7 285 52.6
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.3e-60 236.5 283 55.8
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.1e-59 234.2 223 61.9
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.9e-59 233.4 265 56.2
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-59 233.4 265 55.8
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.9e-59 233.4 282 53.9
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.9e-59 233.4 290 54.1
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.4e-59 231.5 281 53.0
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.8e-58 229.6 254 55.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 3.7e-58 229.2 288 52.1
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.8e-58 228.8 291 51.5
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 6.2e-58 228.4 293 51.5
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 8.1e-58 228.0 243 58.4
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 8.1e-58 228.0 292 51.7
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.1e-57 227.6 237 59.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.8e-57 226.9 244 58.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 2.4e-57 226.5 288 51.7
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 4.0e-57 225.7 295 52.9
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.3e-57 225.3 302 50.7
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 5.3e-57 225.3 287 51.6
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.9e-57 224.9 250 56.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 6.9e-57 224.9 270 53.3
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 6.9e-57 224.9 218 61.9
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 9.0e-57 224.6 275 53.8
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.0e-57 224.6 250 56.0
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.0e-57 224.6 250 56.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.0e-57 224.6 250 56.0
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.2e-56 224.2 308 47.4
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 2.6e-56 223.0 267 52.8
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 3.4e-56 222.6 291 51.9
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 4.5e-56 222.2 246 57.3
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.0e-55 221.1 291 51.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.3e-55 220.7 285 50.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-55 220.7 282 50.7
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.3e-55 220.7 282 50.7
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.7e-55 220.3 274 52.9
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.7e-55 220.3 283 50.5
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.9e-55 219.5 290 50.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 3.8e-55 219.2 246 56.9
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.8e-55 219.2 296 49.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 4.9e-55 218.8 292 51.7
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.4e-54 217.2 263 53.6
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.9e-54 216.9 241 62.7
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 2.5e-54 216.5 244 57.4
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 9.3e-54 214.5 288 50.0
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-53 214.2 278 50.7
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-53 214.2 278 50.7
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.2e-53 214.2 278 50.7
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.1e-53 213.4 291 50.5
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.5e-53 212.6 289 50.5
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 6.0e-53 211.8 246 55.7
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.3e-52 209.9 291 50.2
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 8.7e-52 208.0 287 49.8
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 8.7e-52 208.0 271 50.6
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 5.3e-49 198.7 230 53.9
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-48 197.6 283 51.9
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.0e-47 192.2 281 47.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.1e-46 191.0 232 53.0
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.3e-44 183.3 286 45.8
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 3.9e-44 182.6 222 53.6
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-43 181.0 280 46.8
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-43 180.3 278 46.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 5.7e-43 178.7 312 46.5
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 7.4e-43 178.3 278 46.4
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.7e-43 177.9 191 57.1
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.3e-42 177.6 274 46.7
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.2e-42 176.8 285 48.8
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.2e-42 176.8 267 47.9
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 8.2e-42 174.9 223 50.2
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 1.8e-41 173.7 171 60.2
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 4.1e-41 172.6 229 51.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.2e-40 171.0 231 49.4
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-40 170.6 274 45.6
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.0e-40 170.2 178 60.1
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 2.0e-40 170.2 178 60.1
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.6e-40 169.9 291 44.3
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 3.8e-39 166.0 202 52.5
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 5.0e-39 165.6 203 51.7
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-38 164.5 278 44.6
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.2e-38 162.9 287 44.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.2e-38 162.9 276 43.8
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 5.5e-38 162.2 283 42.0
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.1e-37 160.2 290 43.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-34 151.0 292 42.1
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.2e-32 144.4 191 50.3
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 3.8e-31 139.4 190 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 4.2e-30 136.0 287 36.6
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-29 132.9 216 42.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 6.1e-29 132.1 231 39.0
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 3.9e-28 129.4 262 39.3
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.0e-27 127.1 123 61.0
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.8e-26 123.2 170 51.8
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 9.1e-25 118.2 167 49.7
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.6e-24 116.7 148 51.4
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 5.9e-24 115.5 188 42.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 1.5e-22 110.9 285 39.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.9e-22 110.5 243 37.9
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.2e-21 107.8 175 43.4
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.1e-21 107.1 93 65.6
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.6e-21 106.3 71 76.1
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.0e-20 102.8 131 53.4
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.0e-20 102.8 123 50.4
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 1.5e-19 100.9 127 44.9
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.3e-18 95.5 129 48.1
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 4.1e-17 92.8 115 53.0
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 5.3e-17 92.4 162 42.0
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.7e-16 90.1 157 45.9
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 7.7e-16 88.6 163 40.5
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.0e-15 88.2 134 47.0
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 5.0e-15 85.9 122 45.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.5e-15 85.5 98 55.1
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 8.5e-15 85.1 209 34.0
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 2.7e-13 80.1 48 81.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.7e-13 79.3 91 52.7
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.8e-12 77.4 58 69.0
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.5e-11 72.0 91 52.7
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 9.1e-09 65.1 45 71.1
DCAR_018080 Daucus carota HOM05D002169 ORTHO05D018172 2.0e-08 63.9 46 71.7
DCAR_013591 Daucus carota HOM05D003921 ORTHO05D004394 1.7e-07 60.8 123 38.2
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 2.2e-07 60.5 81 46.9
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.2e-07 60.5 157 35.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.0e-07 59.3 147 35.4


User provided reference genes

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