Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 8.1e-126 453.8 229 100.0
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 3.8e-83 312.0 252 69.8
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.3e-78 297.0 221 72.4
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.2e-78 296.2 225 71.1
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.7e-78 295.4 219 72.6
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.2e-78 294.3 216 73.1
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.1e-77 292.4 219 71.7
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.5e-76 288.5 157 94.9
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 5.5e-74 281.6 187 77.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 9.7e-71 270.8 188 75.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.3e-70 268.1 226 63.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.4e-64 250.4 205 65.4
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.6e-63 246.1 179 73.7
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.3e-62 243.8 196 65.3
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.3e-62 243.8 183 68.9
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.8e-62 241.9 183 68.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 4.8e-62 241.9 195 66.7
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 4.1e-61 238.8 180 65.0
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-59 233.8 180 67.2
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.9e-59 232.6 219 58.0
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.8e-59 232.3 172 65.7
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.5e-59 231.1 219 58.0
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.5e-58 229.6 152 74.3
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.5e-58 228.4 225 55.6
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.2e-58 228.0 183 64.5
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 9.4e-58 227.6 225 60.0
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.1e-57 226.5 193 62.7
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.1e-57 226.5 193 62.7
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.7e-57 226.1 152 73.7
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 3.6e-57 225.7 200 60.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.0e-56 224.2 200 62.0
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.3e-56 223.0 187 64.7
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 3.0e-56 222.6 160 70.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.0e-56 222.6 219 57.5
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 4.0e-56 222.2 179 64.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 5.2e-56 221.9 146 75.3
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 8.8e-56 221.1 219 57.5
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.2e-55 220.7 227 56.4
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 1.2e-55 220.7 212 55.2
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.0e-55 219.9 188 61.7
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 5.7e-55 218.4 128 82.8
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.3e-54 217.2 170 65.9
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.3e-54 217.2 171 64.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.8e-54 216.1 226 52.2
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 2.8e-54 216.1 215 55.8
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 4.8e-54 215.3 128 82.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 8.3e-54 214.5 159 67.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 8.3e-54 214.5 156 69.9
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.1e-53 214.2 186 60.8
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 2.4e-53 213.0 189 60.3
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.1e-53 212.6 179 63.1
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 5.4e-53 211.8 212 55.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.0e-53 211.5 160 66.9
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.0e-53 211.5 160 66.9
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.0e-51 207.6 167 65.3
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.3e-51 206.5 232 51.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.9e-51 206.1 157 65.6
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.8e-51 205.7 176 63.1
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 8.6e-51 204.5 158 67.1
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 1.1e-50 204.1 156 67.9
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.5e-50 203.8 211 54.0
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.5e-50 203.8 158 65.2
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-50 203.8 158 67.1
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 3.3e-50 202.6 166 65.1
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.2e-50 202.2 156 68.6
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 5.5e-50 201.8 157 66.9
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 5.5e-50 201.8 157 65.6
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 7.2e-50 201.4 180 58.9
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-49 200.3 155 61.9
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.1e-49 199.9 205 54.1
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 2.1e-49 199.9 205 54.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 2.1e-49 199.9 205 54.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 2.1e-49 199.9 205 54.1
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 2.1e-49 199.9 177 59.9
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 2.8e-49 199.5 178 59.6
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.6e-49 199.1 169 60.9
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 4.7e-49 198.7 177 59.3
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 4.7e-49 198.7 157 63.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 6.1e-49 198.4 177 59.3
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 6.1e-49 198.4 157 64.3
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.2e-47 194.1 170 60.6
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 7.5e-47 191.4 180 56.7
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 9.8e-47 191.0 237 48.1
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.3e-46 190.7 172 60.5
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.7e-46 190.3 160 63.1
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.2e-46 189.9 161 62.7
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.8e-46 189.5 121 75.2
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 8.3e-46 188.0 165 61.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.1e-45 187.6 161 60.2
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.4e-45 187.2 170 58.2
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.8e-45 186.8 161 60.2
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.4e-45 185.3 156 63.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.6e-44 183.7 165 60.0
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.7e-44 183.0 156 62.8
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 4.5e-44 182.2 209 49.8
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.3e-43 180.6 182 53.8
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.9e-43 179.1 168 58.9
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.0e-43 178.7 135 69.6
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.5e-42 177.2 165 57.0
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.9e-42 176.8 155 57.4
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 5.6e-42 175.3 198 53.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 6.1e-41 171.8 207 51.7
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.1e-40 169.5 163 55.8
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.1e-40 169.5 163 55.8
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 6.8e-40 168.3 199 51.3
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 5.8e-39 165.2 182 50.5
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.5e-36 156.0 144 59.0
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 4.6e-36 155.6 128 62.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 6.0e-36 155.2 241 41.1
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 3.9e-35 152.5 208 45.7
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 8.6e-35 151.4 218 45.4
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.6e-33 147.1 176 48.9
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 6.2e-33 145.2 102 68.6
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 4.0e-32 142.5 104 68.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.5e-26 124.0 80 71.2
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 3.3e-26 122.9 101 61.4
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 3.3e-26 122.9 95 64.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 6.0e-20 102.1 104 53.8
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.2e-17 94.4 88 56.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.2e-13 79.3 69 55.1
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.0e-11 74.7 121 39.7
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.7e-11 73.9 45 75.6
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 2.3e-11 73.6 120 37.5
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.5e-10 70.9 101 45.5
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.8e-08 63.9 63 49.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.4e-08 63.5 63 49.2
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.4e-08 63.5 63 49.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 9.0e-08 61.6 63 47.6
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.0e-07 60.5 122 37.7
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 1.3e-06 57.8 121 36.4
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 2.2e-06 57.0 143 31.5
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 6.4e-06 55.5 143 30.1
PGR111G0041 Punica granatum HOM05D000964 ORTHO05D003870 8.4e-06 55.1 143 31.5


User provided reference genes

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