Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0179000 Rhododendron simsii HOM05D000215 ORTHO05D026101 1.2e-191 672.9 335 100.0
Rhsim01G0175900 Rhododendron simsii HOM05D001813 ORTHO05D026101 4.2e-38 162.9 182 46.7
Rhsim10G0105300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-34 151.0 251 35.5
Rhsim02G0067500 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.1e-25 120.2 181 38.7
Rhsim10G0178900 Rhododendron simsii HOM05D000511 ORTHO05D000413 6.5e-23 112.5 58 100.0
Rhsim04G0118100 Rhododendron simsii HOM05D000215 ORTHO05D026101 1.0e-20 105.1 154 42.2
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 3.0e-20 103.6 175 33.7
Rhsim04G0044400 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.9e-14 84.3 98 46.9
Rhsim02G0085200 Rhododendron simsii HOM05D000215 ORTHO05D026101 1.1e-11 75.1 49 63.3
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 7.4e-11 72.4 160 31.2
Rhsim07G0140700 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.7e-10 70.1 115 37.4
BolC4t22740H Brassica oleracea HOM05D000003 ORTHO05D001498 6.3e-10 69.3 156 33.3
Rhsim02G0158300 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.2e-10 68.9 83 45.8
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 1.1e-09 68.6 172 30.8
vmacro03056 Vaccinium macrocarpon HOM05D000511 ORTHO05D000413 5.3e-09 66.2 153 29.4
PSO210G7492 Papaver somniferum HOM05D007919 ORTHO05D006738 9.1e-09 65.5 178 26.4
Rhsim04G0229200 Rhododendron simsii HOM05D000322 ORTHO05D026101 9.1e-09 65.5 76 38.2
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-08 64.7 141 30.5
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 3.4e-08 63.5 170 28.2
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 3.4e-08 63.5 168 26.2
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 3.4e-08 63.5 143 31.5
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 3.4e-08 63.5 174 28.7
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 5.9e-08 62.8 148 29.1
BolC8t47524H Brassica oleracea HOM05D000003 ORTHO05D000004 5.9e-08 62.8 157 31.2
PSO170G5434 Papaver somniferum HOM05D007919 ORTHO05D006738 5.9e-08 62.8 160 27.5
PSO801G0560 Papaver somniferum HOM05D000003 ORTHO05D001026 5.9e-08 62.8 186 25.3
Aqoxy2G01964 Aquilegia oxysepala HOM05D000003 ORTHO05D006738 1.7e-07 61.2 163 28.2
Rhsim06G0137800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-07 61.2 159 28.9
CANSAT25G2255 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-07 60.8 177 26.0
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-07 60.1 163 25.2
AT4G29090 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 3.8e-07 60.1 157 28.7
TWI79G0690 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.8e-07 60.1 182 28.0
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 5.0e-07 59.7 161 26.7
BcaB02g10660 Brassica carinata HOM05D000003 ORTHO05D000004 5.0e-07 59.7 153 26.8
FvH4_2g04612 Fragaria vesca HOM05D008133 ORTHO05D009449 5.0e-07 59.7 99 36.4
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.5e-07 59.3 147 27.9
AT5G65005 Arabidopsis thaliana HOM05D004976 ORTHO05D004851 8.5e-07 58.9 152 27.0
FvH4_7g04921 Fragaria vesca HOM05D000003 ORTHO05D000167 8.5e-07 58.9 150 32.0
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 8.5e-07 58.9 159 26.4
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 1.1e-06 58.5 145 31.0
LjContig00141g0016571 Lotus japonicus HOM05D000003 ORTHO05D000167 1.1e-06 58.5 170 28.2
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-06 58.5 157 26.1
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-06 58.5 155 29.7
AUR62005633 Chenopodium quinoa HOM05D000003 ORTHO05D000167 1.4e-06 58.2 176 26.1
PSO017G3839 Papaver somniferum HOM05D007919 ORTHO05D006738 1.4e-06 58.2 174 29.9
PSO832G2806 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 58.2 190 27.9
Rhsim02G0121400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-06 58.2 124 32.3
Rhsim08G0064500 Rhododendron simsii HOM05D029977 ORTHO05D000167 1.4e-06 58.2 144 34.0
Ah.07g198050 Amaranthus hybridus HOM05D000003 ORTHO05D008897 1.9e-06 57.8 183 29.5
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 2.5e-06 57.4 156 28.8
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 2.5e-06 57.4 168 26.2
Lj2g0001240 Lotus japonicus HOM05D000003 ORTHO05D000167 2.5e-06 57.4 174 27.6
Manes.10G073737 Manihot esculenta HOM05D000003 ORTHO05D000004 2.5e-06 57.4 180 23.9
Prupe.5G067400 Prunus persica HOM05D011824 ORTHO05D017030 2.5e-06 57.4 85 41.2
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-06 57.0 175 26.9
Lj4g0011977 Lotus japonicus HOM05D000003 ORTHO05D000167 3.2e-06 57.0 107 35.5
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 3.2e-06 57.0 154 29.9
RcHm_v2.0_Chr4g0415961 Rosa chinensis HOM05D000003 ORTHO05D000167 3.2e-06 57.0 153 26.8
CANSAT11G1896 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-06 56.6 186 25.8
FvH4_4g05481 Fragaria vesca HOM05D008133 ORTHO05D009449 4.2e-06 56.6 97 35.1
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 4.2e-06 56.6 168 28.0
TAR351G0004 Trochodendron aralioides HOM05D000003 ORTHO05D009135 4.2e-06 56.6 181 30.4
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 5.5e-06 56.2 176 30.1
Prupe.8G042700 Prunus persica HOM05D000003 ORTHO05D009449 5.5e-06 56.2 157 28.7
QL04p013142 Quercus lobata HOM05D000003 ORTHO05D000167 5.5e-06 56.2 160 27.5
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 7.2e-06 55.8 150 28.0
Lj3g0008362 Lotus japonicus HOM05D000003 ORTHO05D000004 7.2e-06 55.8 145 31.0
PSO210G1914 Papaver somniferum HOM05D003407 ORTHO05D001026 7.2e-06 55.8 159 25.8
Prupe.8G036100 Prunus persica HOM05D000003 ORTHO05D016376 7.2e-06 55.8 85 35.3
TWI23G0127 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 7.2e-06 55.8 192 25.0
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 9.4e-06 55.5 182 26.4
CiPaw.11G082900 Carya illinoinensis HOM05D000003 ORTHO05D000004 9.4e-06 55.5 155 28.4
TAR346G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 9.4e-06 55.5 161 31.7


User provided reference genes

Program Settings