Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0177500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.0e-82 310.1 166 100.0
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 1.2e-59 233.4 258 57.0
Rhsim02G0180400 Rhododendron simsii HOM05D003236 ORTHO05D003620 9.9e-57 223.8 258 54.7
Cfa015952 Carpinus fangiana HOM05D003236 ORTHO05D003620 1.1e-50 203.8 207 58.0
Haze_00167 Corylus avellana HOM05D003236 ORTHO05D003620 2.4e-50 202.6 207 57.0
DCAR_027180 Daucus carota HOM05D003236 ORTHO05D003620 3.1e-50 202.2 217 53.5
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 9.0e-50 200.7 257 49.4
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 4.4e-49 198.4 257 47.5
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 9.9e-49 197.2 257 48.2
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 3.8e-48 195.3 257 47.9
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 8.4e-48 194.1 258 46.5
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 2.4e-47 192.6 257 47.1
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 3.2e-47 192.2 258 47.3
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 4.2e-47 191.8 258 46.9
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 5.4e-47 191.4 258 48.1
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.4e-47 191.4 258 46.1
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 2.1e-46 189.5 257 46.7
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 2.1e-46 189.5 257 47.5
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 2.7e-46 189.1 258 47.3
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 3.5e-46 188.7 257 47.1
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 4.6e-46 188.3 258 45.7
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.0e-45 187.2 257 46.7
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.0e-45 187.2 257 45.5
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 1.7e-45 186.4 257 46.3
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 3.0e-45 185.7 257 45.1
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 3.9e-45 185.3 258 45.0
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 5.1e-45 184.9 257 46.3
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 8.7e-45 184.1 256 47.3
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 2.5e-44 182.6 257 45.1
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 2.5e-44 182.6 257 44.7
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 5.6e-44 181.4 257 45.9
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 5.6e-44 181.4 257 46.3
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 7.3e-44 181.0 257 45.1
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 9.6e-44 180.6 258 44.6
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 1.3e-43 180.3 258 44.2
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 1.3e-43 180.3 257 44.7
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 2.1e-43 179.5 258 44.2
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 2.8e-43 179.1 258 45.3
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 2.8e-43 179.1 258 45.3
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 2.8e-43 179.1 257 45.5
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 3.6e-43 178.7 258 44.2
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 3.6e-43 178.7 257 44.7
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 4.8e-43 178.3 257 44.0
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 6.2e-43 177.9 258 45.0
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 6.2e-43 177.9 257 44.0
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 1.4e-42 176.8 257 45.5
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 1.8e-42 176.4 257 44.0
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 1.8e-42 176.4 257 44.7
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 2.4e-42 176.0 258 44.2
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 2.4e-42 176.0 256 44.9
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 3.1e-42 175.6 256 44.5
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 4.0e-42 175.3 257 43.2
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 4.0e-42 175.3 257 44.4
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 4.0e-42 175.3 257 44.7
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 4.0e-42 175.3 257 44.4
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.3e-42 174.9 258 44.2
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 5.3e-42 174.9 257 42.4
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 5.3e-42 174.9 257 42.4
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 6.9e-42 174.5 258 43.8
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 9.0e-42 174.1 258 43.8
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.2e-41 173.7 257 42.0
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.5e-41 173.3 258 42.6
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 2.0e-41 172.9 257 44.7
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 2.0e-41 172.9 257 42.4
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 2.6e-41 172.6 257 45.1
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 2.6e-41 172.6 257 44.7
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 7.6e-41 171.0 257 42.8
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 9.9e-41 170.6 257 45.1
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 1.3e-40 170.2 257 45.5
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.7e-40 169.9 257 42.4
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 8.4e-40 167.5 257 41.2
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 4.2e-39 165.2 258 43.0
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 4.2e-39 165.2 257 42.0
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 7.1e-39 164.5 245 42.0
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 9.3e-39 164.1 257 41.2
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 2.1e-38 162.9 258 43.0
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 2.7e-38 162.5 258 43.0
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 3.5e-38 162.2 257 40.1
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 3.5e-38 162.2 257 40.5
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 3.5e-38 162.2 257 40.5
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 7.9e-38 161.0 257 41.2
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 1.8e-37 159.8 259 41.7
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 1.8e-37 159.8 257 41.6
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 2.3e-37 159.5 257 39.7
RcHm_v2.0_Chr6g0272851 Rosa chinensis HOM05D003236 ORTHO05D003620 2.3e-37 159.5 229 44.5
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 3.0e-37 159.1 257 40.5
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 3.0e-37 159.1 257 40.9
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 3.0e-37 159.1 257 41.2
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 3.9e-37 158.7 257 40.1
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 3.9e-37 158.7 255 43.1
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 3.9e-37 158.7 257 40.1
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 5.1e-37 158.3 257 40.5
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 1.5e-36 156.8 257 39.3
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 1.9e-36 156.4 257 39.7
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 3.3e-36 155.6 257 39.3
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 3.3e-36 155.6 257 39.3
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 4.3e-36 155.2 257 39.3
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 7.4e-36 154.5 257 40.1
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.1e-35 152.9 258 39.1
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 2.1e-35 152.9 257 41.2
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 3.7e-35 152.1 257 38.1
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 4.8e-35 151.8 257 38.1
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 6.2e-35 151.4 257 40.1
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 8.1e-35 151.0 257 41.2
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 1.1e-34 150.6 255 40.0
BolC9t58571H Brassica oleracea HOM05D003236 ORTHO05D003620 1.1e-34 150.6 221 43.0
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 1.1e-34 150.6 257 39.7
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 1.8e-34 149.8 257 38.1
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 2.4e-34 149.4 260 40.0
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 4.0e-34 148.7 260 40.4
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 9.0e-34 147.5 257 39.7
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 9.0e-34 147.5 232 40.9
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 1.2e-33 147.1 251 39.8
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 2.6e-33 146.0 257 39.3
A10p20430 Brassica napus HOM05D003236 ORTHO05D003620 1.0e-32 144.1 240 39.2
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 2.2e-32 142.9 258 38.0
BcaC04g18588 Brassica carinata HOM05D003236 ORTHO05D003620 2.2e-32 142.9 227 42.3
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 8.4e-32 141.0 257 37.0
C09p57040 Brassica napus HOM05D003236 ORTHO05D003620 8.4e-32 141.0 226 42.0
SGA_v2.0_scaffold39G15309 Striga asiatica HOM05D003236 ORTHO05D003620 1.4e-31 140.2 238 40.8
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 3.2e-31 139.0 257 36.2
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 1.2e-30 137.1 256 37.1
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 2.7e-30 136.0 258 36.4
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 7.9e-30 134.4 258 37.6
Cc03_g03280 Coffea canephora HOM05D003236 ORTHO05D003620 1.0e-29 134.0 94 75.5
Nitab4.5_0010073g0020 Nicotiana tabacum HOM05D003236 ORTHO05D003620 3.9e-29 132.1 94 74.5
Nitab4.5_0006639g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.7e-29 131.3 94 74.5
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 6.7e-29 131.3 256 35.5
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 1.1e-28 130.6 266 38.0
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.1e-28 130.6 255 34.5
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 1.5e-28 130.2 258 34.1
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 2.5e-28 129.4 259 34.0
Oeu030324.1 Olea europaea HOM05D003236 ORTHO05D003620 9.6e-28 127.5 94 71.3
Gohir.A05G230350 Gossypium hirsutum HOM05D003236 ORTHO05D003620 6.2e-27 124.8 246 34.6
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 1.4e-26 123.6 258 34.5
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.4e-26 123.6 259 34.7
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 5.3e-26 121.7 253 33.6
Lsat_1_v5_gn_4_32481 Lactuca sativa HOM05D003236 ORTHO05D003620 9.0e-26 120.9 108 59.3
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.5e-25 120.2 253 33.2
RcHm_v2.0_Chr6g0272831 Rosa chinensis HOM05D003236 ORTHO05D003620 1.5e-25 120.2 225 39.6
Peaxi162Scf00769g00032 Petunia axillaris HOM05D003236 ORTHO05D003620 2.0e-25 119.8 80 75.0
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.6e-25 119.4 258 34.9
GSVIVG01017907001 Vitis vinifera HOM05D003236 ORTHO05D003620 5.8e-25 118.2 94 67.0
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 7.6e-25 117.9 257 32.7
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 1.0e-24 117.5 257 32.7
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 1.7e-24 116.7 115 56.5
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.2e-24 116.3 257 31.9
AUR62009269 Chenopodium quinoa HOM05D003236 ORTHO05D003620 2.9e-24 115.9 96 61.5
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 3.8e-24 115.5 218 38.1
HanXRQChr11g0351371 Helianthus annuus HOM05D003236 ORTHO05D003620 3.8e-24 115.5 226 37.6
Haze_00534 Corylus avellana HOM05D003236 ORTHO05D003620 2.1e-22 109.8 71 77.5
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 2.7e-22 109.4 258 31.8
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 3.5e-22 109.0 256 32.0
Lj3P750T44 Lonicera japonica HOM05D003236 ORTHO05D003620 6.7e-21 104.8 75 66.7
PGSC0003DMG401004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 8.7e-21 104.4 65 75.4
Lj3P716T36 Lonicera japonica HOM05D003236 ORTHO05D003620 1.1e-20 104.0 115 50.4
Duzib147G0300 Durio zibethinus HOM05D003236 ORTHO05D003620 2.5e-20 102.8 124 50.0
Sp6g25180 Schrenkiella parvula HOM05D003236 ORTHO05D008795 3.3e-20 102.4 97 59.8
PGSC0003DMG401011813 Solanum tuberosum HOM05D003236 ORTHO05D003620 3.3e-20 102.4 75 68.0
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 3.3e-20 102.4 75 68.0
Haze_00533 Corylus avellana HOM05D003236 ORTHO05D003620 4.8e-19 98.6 75 66.7
COL.COLO4_05384 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.1e-18 97.4 75 64.0
BcaB08g36593 Brassica carinata HOM05D003236 ORTHO05D003620 9.0e-18 94.4 94 58.5
Psat1g182720 Pisum sativum HOM05D003236 ORTHO05D003620 1.7e-16 90.1 75 62.7
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 6.5e-16 88.2 260 27.7
Medtr0103s0010 Medicago truncatula HOM05D003236 ORTHO05D003620 3.2e-15 85.9 65 66.2
Medtr6g009130 Medicago truncatula HOM05D003236 ORTHO05D003620 3.2e-15 85.9 65 66.2
Lalb_Chr20g0118481 Lupinus albus HOM05D003236 ORTHO05D003620 1.6e-14 83.6 70 57.1
SMO361G0773 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.1e-12 77.4 262 25.6
COL.COLO4_00130 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.0e-12 76.6 96 45.8
Gorai.013G194000 Gossypium raimondii HOM05D003236 ORTHO05D003620 9.7e-12 74.3 81 48.1
SMO361G0534 Selaginella moellendorffii HOM05D003236 ORTHO05D003620 1.3e-11 73.9 262 25.2
COL.COLO4_20850 Corchorus olitorius HOM05D003236 ORTHO05D003620 3.7e-11 72.4 77 50.6
Mapoly0005s0172 Marchantia polymorpha HOM05D003236 ORTHO05D003620 6.3e-11 71.6 273 28.2
Pp3c22_14290 Physcomitrium patens HOM05D003236 ORTHO05D003620 8.2e-11 71.2 265 25.3
Lalb_Chr20g0118501 Lupinus albus HOM05D003236 ORTHO05D003620 1.5e-09 67.0 46 69.6
CBR_g32182 Chara braunii HOM05D003236 ORTHO05D003620 2.5e-07 59.7 100 36.0
AL2G12120 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 3.2e-07 59.3 46 60.9


User provided reference genes

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