Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 0.0e+00 1186.4 642 100.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 3.3e-225 785.4 631 70.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.2e-165 586.6 623 57.3
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 5.9e-158 562.0 652 53.1
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 6.4e-144 515.4 631 50.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.3e-141 507.7 579 50.9
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.3e-140 503.1 618 49.2
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 8.9e-138 495.0 659 48.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 5.8e-137 492.3 622 48.2
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 9.8e-137 491.5 641 49.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 9.8e-137 491.5 641 48.5
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.7e-136 489.6 643 48.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.7e-136 489.6 480 56.0
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 1.9e-132 477.2 623 47.0
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.5e-132 476.9 575 49.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.2e-130 469.2 625 47.2
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 2.0e-129 467.2 547 49.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 5.8e-129 465.7 469 55.9
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 9.2e-127 458.4 552 48.4
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.7e-126 456.8 600 45.7
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.3e-125 454.5 615 45.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.8e-123 446.8 465 54.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.1e-122 444.9 629 44.8
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-122 444.9 447 56.8
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.4e-122 444.5 637 44.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.2e-122 442.6 636 44.2
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 5.2e-122 442.6 629 45.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.4e-121 439.9 648 45.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 5.8e-121 439.1 617 44.7
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 7.6e-121 438.7 612 44.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.7e-120 437.6 605 45.5
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.7e-120 437.6 502 49.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.8e-120 436.4 625 44.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.1e-119 434.9 477 52.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.4e-119 433.7 469 52.0
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.1e-119 433.0 436 54.6
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.1e-118 430.6 547 47.7
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.1e-118 430.6 547 47.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.1e-118 430.6 471 50.1
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.0e-118 429.1 662 43.2
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.0e-117 426.8 479 49.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 6.6e-117 425.6 618 43.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 6.6e-117 425.6 480 50.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.1e-116 424.9 442 53.6
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-116 424.5 458 52.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.9e-116 424.1 465 57.4
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.5e-116 423.7 599 43.4
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.5e-116 423.7 642 43.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.6e-115 421.0 527 47.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.4e-114 417.2 636 43.4
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.6e-113 413.7 594 43.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 4.9e-112 409.5 596 43.1
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.9e-112 409.5 604 42.7
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 6.4e-112 409.1 464 50.9
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.4e-111 407.9 591 43.1
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.4e-111 407.9 475 48.2
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.2e-111 406.8 555 43.4
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.2e-111 406.4 589 42.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 5.4e-111 406.0 438 52.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 9.3e-111 405.2 451 51.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-110 404.8 475 49.3
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.1e-110 404.1 437 50.1
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.1e-109 399.4 479 47.2
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 3.3e-108 396.7 546 44.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.6e-107 393.3 590 43.2
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.2e-107 392.5 465 47.5
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 8.1e-107 392.1 467 46.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.4e-106 390.6 559 43.3
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.2e-105 388.3 477 47.6
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.5e-105 387.9 494 45.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.5e-105 386.3 478 46.9
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 4.2e-103 379.8 479 45.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.6e-102 377.9 450 48.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.7e-102 377.1 658 39.7
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.9e-101 373.2 502 45.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.9e-100 370.9 617 40.2
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.6e-99 367.9 618 39.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.6e-99 367.9 650 39.5
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.8e-99 367.1 447 47.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 2.8e-99 367.1 464 45.0
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.8e-99 366.3 599 41.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.1e-98 363.6 495 43.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.0e-98 363.2 623 40.4
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 4.9e-96 356.3 484 45.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 6.4e-96 355.9 501 43.5
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 5.5e-95 352.8 585 40.2
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 6.0e-94 349.4 478 42.5
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 7.9e-94 349.0 587 40.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.9e-93 346.7 289 66.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.3e-91 341.7 306 55.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.3e-91 341.7 473 44.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 4.5e-89 333.2 476 40.3
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.1e-87 328.6 466 39.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 4.2e-87 326.6 481 43.0
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 9.3e-87 325.5 573 38.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 6.0e-86 322.8 544 43.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.9e-84 317.8 439 46.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.8e-83 313.2 622 37.3
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 8.2e-83 312.4 622 36.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-82 312.0 622 37.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-82 312.0 622 37.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.4e-82 311.6 622 37.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.3e-82 309.7 477 42.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 7.6e-81 305.8 543 37.9
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.0e-80 305.4 533 39.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.4e-79 301.6 627 37.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.2e-79 300.4 599 38.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.7e-75 287.0 253 58.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.1e-74 283.5 582 36.3
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 5.3e-74 283.1 534 37.1
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.5e-65 255.0 302 50.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.7e-62 243.4 286 51.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 8.0e-62 242.7 362 43.9
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.7e-60 236.5 581 33.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.4e-58 231.1 171 68.4
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.1e-58 229.2 359 41.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 2.0e-52 211.5 167 61.1
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 2.9e-48 197.6 292 40.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.8e-45 186.4 263 41.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 7.7e-41 172.9 142 61.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.7e-40 171.8 286 37.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 8.6e-40 169.5 321 35.2
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.7e-36 156.8 297 34.7
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 2.8e-35 154.5 341 34.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.1e-34 150.6 297 34.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.0e-33 148.3 238 38.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.3e-32 145.6 330 33.0
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.5e-31 141.4 102 60.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.5e-31 141.4 102 60.8
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.3e-29 134.8 287 33.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.9e-29 132.9 225 36.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.2e-26 124.4 175 42.9
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 7.8e-25 119.8 130 47.7
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.5e-23 115.5 158 47.5
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 3.4e-20 104.4 316 25.3
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-18 99.0 278 30.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.4e-18 98.2 99 57.6
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.3e-13 81.6 258 26.7
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 9.9e-12 76.3 270 26.7
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 9.9e-12 76.3 270 26.7
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 9.9e-12 76.3 270 26.7
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.4e-11 73.6 270 25.6
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.4e-11 73.6 270 25.6
Rhsim10G0134100 Rhododendron simsii HOM05D004947 ORTHO05D340173 1.7e-08 65.5 33 97.0


User provided reference genes

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