Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0147400 Rhododendron simsii HOM05D005266 ORTHO05D006416 5.0e-47 190.7 89 100.0
Rhsim07G0083300 Rhododendron simsii HOM05D005266 ORTHO05D006416 4.0e-12 74.7 38 86.8
CSS0021201 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.6e-11 72.0 38 81.6
CSS0021291 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 2.6e-11 72.0 38 81.6
vmacro13906 Vaccinium macrocarpon HOM05D005266 ORTHO05D006416 3.4e-11 71.6 38 84.2
Rhsim03G0018500 Rhododendron simsii HOM05D005266 ORTHO05D006416 7.5e-11 70.5 37 86.5
Actinidia27330 Actinidia chinensis HOM05D005266 ORTHO05D006416 1.3e-10 69.7 38 78.9
Lalb_Chr05g0211611 Lupinus albus HOM05D005266 ORTHO05D006416 1.7e-10 69.3 52 69.2
Glyma.01G224700 Glycine max HOM05D005266 ORTHO05D006416 2.2e-10 68.9 52 69.2
SGA_v2.0_scaffold305G47940 Striga asiatica HOM05D005266 ORTHO05D006416 2.2e-10 68.9 39 76.9
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 3.7e-10 68.2 52 67.3
Nitab4.5_0007099g0010 Nicotiana tabacum HOM05D005266 ORTHO05D006416 4.9e-10 67.8 67 49.3
Phvul.002G163300 Phaseolus vulgaris HOM05D005266 ORTHO05D006416 4.9e-10 67.8 68 51.5
arahy.Tifrunner.gnm1.ann1.B1IHLW Arachis hypogaea HOM05D005266 ORTHO05D006416 6.3e-10 67.4 52 67.3
arahy.Tifrunner.gnm1.ann1.J0IMEJ Arachis hypogaea HOM05D005266 ORTHO05D006416 6.3e-10 67.4 52 67.3
Ca_20295_v3 Cicer arietinum L. HOM05D005266 ORTHO05D006416 6.3e-10 67.4 38 78.9
Glyma.11G018300 Glycine max HOM05D005266 ORTHO05D006416 6.3e-10 67.4 38 78.9
Nitab4.5_0000223g0310 Nicotiana tabacum HOM05D005266 ORTHO05D006416 6.3e-10 67.4 67 49.3
Cc08_g15880 Coffea canephora HOM05D005266 ORTHO05D006416 8.3e-10 67.0 38 76.3
Medtr6g072020 Medicago truncatula HOM05D005266 ORTHO05D006416 1.4e-09 66.2 38 76.3
Psat1g124400 Pisum sativum HOM05D005266 ORTHO05D006416 1.8e-09 65.9 38 76.3
Cpa.g.sc79.62 Carica papaya HOM05D005266 ORTHO05D006416 3.1e-09 65.1 67 47.8
CDE02G0379 Ceratophyllum demersum HOM05D005266 ORTHO05D006416 3.1e-09 65.1 38 76.3
Aqoxy5G04165 Aquilegia oxysepala HOM05D005266 ORTHO05D006416 4.1e-09 64.7 38 73.7
Hma1.2p1_0952F.1_g241000 Hydrangea macrophylla HOM05D005266 ORTHO05D006416 4.1e-09 64.7 38 76.3
Nn3g19065 Nelumbo nucifera HOM05D005266 ORTHO05D006416 4.1e-09 64.7 38 73.7
TAR375G1085 Trochodendron aralioides HOM05D005266 ORTHO05D006416 4.1e-09 64.7 38 71.1
Eucgr.D01715 Eucalyptus grandis HOM05D005266 ORTHO05D006416 5.4e-09 64.3 42 66.7
TPR.G31703 Trifolium pratense HOM05D005266 ORTHO05D006416 5.4e-09 64.3 38 76.3
Solyc08g082100.3 Solanum lycopersicum HOM05D005266 ORTHO05D006416 7.0e-09 63.9 38 73.7
PGSC0003DMG400012295 Solanum tuberosum HOM05D005266 ORTHO05D006416 7.0e-09 63.9 38 73.7
Gohir.A12G235200 Gossypium hirsutum HOM05D005266 ORTHO05D006416 9.2e-09 63.5 70 47.1
Gohir.D12G236400 Gossypium hirsutum HOM05D005266 ORTHO05D006416 9.2e-09 63.5 70 47.1
Gorai.008G253100 Gossypium raimondii HOM05D005266 ORTHO05D006416 9.2e-09 63.5 70 47.1
Nn1g01825 Nelumbo nucifera HOM05D005266 ORTHO05D006416 9.2e-09 63.5 38 73.7
RcHm_v2.0_Chr7g0195271 Rosa chinensis HOM05D005266 ORTHO05D006416 9.2e-09 63.5 67 46.3
Sp2g00410 Schrenkiella parvula HOM05D005266 ORTHO05D006416 9.2e-09 63.5 67 44.8
AL2G10520 Arabidopsis lyrata HOM05D005266 ORTHO05D006416 1.2e-08 63.2 67 43.3
AT1G64350 Arabidopsis thaliana HOM05D005266 ORTHO05D006416 1.2e-08 63.2 67 43.3
DCAR_027714 Daucus carota HOM05D005266 ORTHO05D006416 1.2e-08 63.2 38 71.1
Migut.A00673 Erythranthe guttata HOM05D005266 ORTHO05D006416 1.2e-08 63.2 49 59.2
LjContig00312_ERROPOS870357g0017789 Lotus japonicus HOM05D005266 ORTHO05D006416 1.2e-08 63.2 38 73.7
Oeu061096.1 Olea europaea HOM05D005266 ORTHO05D000397 1.2e-08 63.2 38 71.1
SalBow1G3663 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.2e-08 63.2 38 73.7
SalBow1G7588 Salvia bowleyana HOM05D005266 ORTHO05D006416 1.2e-08 63.2 38 73.7
Dinv38851 Davidia involucrata HOM05D005266 ORTHO05D006416 1.6e-08 62.8 38 73.7
Thhalv10023589m.g Eutrema salsugineum HOM05D005266 ORTHO05D006416 1.6e-08 62.8 67 43.3
FAN08G1599 Fragaria x ananassa HOM05D005266 ORTHO05D006416 1.6e-08 62.8 67 47.8
Lsat_1_v5_gn_6_84320 Lactuca sativa HOM05D005266 ORTHO05D006416 1.6e-08 62.8 38 73.7
Sopen08g030390 Solanum pennellii HOM05D005266 ORTHO05D006416 1.6e-08 62.8 38 71.1
FvH4_5g04211 Fragaria vesca HOM05D005266 ORTHO05D006416 2.0e-08 62.4 67 47.8
FAN04G0732 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-08 62.4 67 47.8
FAN13G2918 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-08 62.4 67 47.8
FAN18G4151 Fragaria x ananassa HOM05D005266 ORTHO05D006416 2.0e-08 62.4 67 47.8
PGR031G3352 Punica granatum HOM05D005266 ORTHO05D006416 2.0e-08 62.4 67 44.8
Thecc.03G294500 Theobroma cacao HOM05D005266 ORTHO05D006416 2.0e-08 62.4 70 45.7
MSTRG.11934 Avicennia marina HOM05D005266 ORTHO05D006416 2.7e-08 62.0 38 68.4
CARHR046620 Cardamine hirsuta HOM05D005266 ORTHO05D006416 2.7e-08 62.0 67 41.8
Haze_08644 Corylus avellana HOM05D005266 ORTHO05D006416 2.7e-08 62.0 38 73.7
Carub.0002s0044 Capsella rubella HOM05D005266 ORTHO05D006416 3.5e-08 61.6 67 41.8
MBI06_g35286_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 3.5e-08 61.6 38 71.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 4.5e-08 61.2 67 43.3
THA.LOC104823610 Tarenaya hassleriana HOM05D005266 ORTHO05D006416 4.5e-08 61.2 67 43.3
Atru.chr9.2024 Acer truncatum HOM05D005266 ORTHO05D006416 5.9e-08 60.8 38 68.4
Atru.chr9.2034 Acer truncatum HOM05D005266 ORTHO05D006416 5.9e-08 60.8 67 44.8
Cfa012815 Carpinus fangiana HOM05D005266 ORTHO05D006416 5.9e-08 60.8 38 71.1
CiPaw.12G084500 Carya illinoinensis HOM05D005266 ORTHO05D006416 5.9e-08 60.8 67 46.3
Prupe.5G116300 Prunus persica HOM05D005266 ORTHO05D006416 5.9e-08 60.8 68 48.5
Hund14232 Selenicereus undatus HOM05D005266 ORTHO05D006416 5.9e-08 60.8 38 71.1
EL10Ac5g12895 Beta vulgaris HOM05D005266 ORTHO05D006416 7.8e-08 60.5 38 73.7
BcaB07g31457 Brassica carinata HOM05D005266 ORTHO05D006416 7.8e-08 60.5 38 65.8
BcaC04g22562 Brassica carinata HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 43.3
A09p14760 Brassica napus HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 43.3
C09p17870 Brassica napus HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 43.3
BolC9t54684H Brassica oleracea HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 43.3
BraA09t37122Z Brassica rapa HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 43.3
TWI60G1723 Tripterygium wilfordii HOM05D005266 ORTHO05D006416 7.8e-08 60.5 67 46.3
MELO3C016280.2 Cucumis melo HOM05D005266 ORTHO05D006416 1.0e-07 60.1 38 73.7
Duzib205G1998 Durio zibethinus HOM05D005266 ORTHO05D006416 1.0e-07 60.1 68 47.1
CANSAT21G1278 Cannabis sativa HOM05D005266 ORTHO05D006416 1.3e-07 59.7 38 71.1
PSO135G0479 Papaver somniferum HOM05D005266 ORTHO05D006416 1.3e-07 59.7 38 71.1
MD06G1103700 Malus domestica HOM05D005266 ORTHO05D006416 1.7e-07 59.3 38 68.4
PSO384G5109 Papaver somniferum HOM05D005266 ORTHO05D006416 1.7e-07 59.3 38 68.4
Peaxi162Scf00074g01141 Petunia axillaris HOM05D005266 ORTHO05D006416 1.7e-07 59.3 67 43.3
Sc01g0010180 Simmondsia chinensis HOM05D005266 ORTHO05D006416 1.7e-07 59.3 51 56.9
GSVIVG01019509001 Vitis vinifera HOM05D005266 ORTHO05D006416 1.7e-07 59.3 38 68.4
ClCG07G014940 Citrullus lanatus HOM05D005266 ORTHO05D006416 2.3e-07 58.9 38 71.1
COL.COLO4_10665 Corchorus olitorius HOM05D005266 ORTHO05D006416 2.3e-07 58.9 70 42.9
Ah.12g052360 Amaranthus hybridus HOM05D005266 ORTHO05D006416 2.9e-07 58.5 38 71.1
Sed0003958 Sechium edule HOM05D005266 ORTHO05D006416 2.9e-07 58.5 38 71.1
Hund08403 Selenicereus undatus HOM05D006468 ORTHO05D006908 2.9e-07 58.5 40 67.5
HPP92_004677 Vanilla planifolia HOM05D005266 ORTHO05D006416 2.9e-07 58.5 42 61.9
CSS0028893 Camellia sinensis var. sinensis HOM05D005266 ORTHO05D006416 3.9e-07 58.2 32 78.1
CsaV3_4G006470 Cucumis sativus L. HOM05D005266 ORTHO05D006416 3.9e-07 58.2 38 71.1
HanXRQChr11g0348461 Helianthus annuus HOM05D005266 ORTHO05D006416 3.9e-07 58.2 35 68.6
MBI01_g28590_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 3.9e-07 58.2 41 65.9
AUR62010819 Chenopodium quinoa HOM05D005266 ORTHO05D006416 5.0e-07 57.8 38 68.4
ECA240G2034 Erigeron canadensis HOM05D005266 ORTHO05D006416 6.6e-07 57.4 38 68.4
Lj8A209T47 Lonicera japonica HOM05D005266 ORTHO05D006416 6.6e-07 57.4 38 65.8
Ciclev10021146m.g Citrus clementina HOM05D005266 ORTHO05D006416 8.6e-07 57.0 67 43.3
Lj8C194T1 Lonicera japonica HOM05D005266 ORTHO05D006416 8.6e-07 57.0 67 43.3
ATR0589G095 Amborella trichopoda HOM05D005266 ORTHO05D006416 1.1e-06 56.6 38 60.5
Os01g0620100 Oryza sativa ssp. japonica HOM05D005266 ORTHO05D006416 1.1e-06 56.6 38 60.5
Hund08759 Selenicereus undatus HOM05D005266 ORTHO05D006416 1.1e-06 56.6 69 44.9
Sabra03G0099600 Salix brachista HOM05D005266 ORTHO05D006416 3.3e-06 55.1 73 39.7
Manes.02G011800 Manihot esculenta HOM05D005266 ORTHO05D006416 4.3e-06 54.7 73 39.7
Zm00001eb159590 Zea mays HOM05D005266 ORTHO05D006416 4.3e-06 54.7 38 60.5
HanXRQChr03g0066311 Helianthus annuus HOM05D005266 ORTHO05D006416 5.6e-06 54.3 38 65.8
HanXRQChr03g0085181 Helianthus annuus HOM05D005266 ORTHO05D006416 5.6e-06 54.3 38 63.2
MBI01_g05788_MAGBIO Magnolia biondii HOM05D005266 ORTHO05D006416 5.6e-06 54.3 37 67.6
MD14G1122800 Malus domestica HOM05D005266 ORTHO05D006416 5.6e-06 54.3 38 63.2
unitig_899.g15005 Utricularia gibba HOM05D005266 ORTHO05D006416 5.6e-06 54.3 39 64.1


User provided reference genes

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