Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 6.1e-76 287.3 140 100.0
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.1e-23 112.8 56 92.9
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.8e-20 102.4 53 86.8
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 3.7e-20 102.1 53 86.8
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 6.2e-20 101.3 53 84.9
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 1.8e-19 99.8 57 77.2
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 5.3e-19 98.2 53 83.0
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 5.3e-19 98.2 53 86.8
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 6.9e-19 97.8 53 84.9
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 2.0e-18 96.3 53 77.4
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 2.0e-18 96.3 53 79.2
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 2.0e-18 96.3 53 79.2
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 3.4e-18 95.5 53 77.4
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 3.4e-18 95.5 53 81.1
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 5.8e-18 94.7 53 81.1
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 5.8e-18 94.7 51 82.4
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.0e-17 94.0 55 74.5
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.3e-17 93.6 61 70.5
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.7e-17 93.2 51 82.4
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.7e-17 93.2 51 82.4
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 1.7e-17 93.2 53 77.4
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 2.2e-17 92.8 51 82.4
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 2.9e-17 92.4 53 75.5
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 2.9e-17 92.4 53 79.2
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 2.9e-17 92.4 51 78.4
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 3.8e-17 92.0 53 77.4
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 4.9e-17 91.7 54 72.2
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 4.9e-17 91.7 51 78.4
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 4.9e-17 91.7 51 80.4
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 4.9e-17 91.7 53 79.2
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 6.5e-17 91.3 51 76.5
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.5e-17 91.3 51 76.5
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 6.5e-17 91.3 51 76.5
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 6.5e-17 91.3 51 78.4
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.1e-16 90.5 52 73.1
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 1.1e-16 90.5 50 78.0
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 1.1e-16 90.5 53 79.2
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.9e-16 89.7 51 78.4
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.9e-16 89.7 51 74.5
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.9e-16 89.7 51 76.5
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 2.5e-16 89.4 51 78.4
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 2.5e-16 89.4 53 71.7
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 2.5e-16 89.4 53 71.7
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 3.2e-16 89.0 52 76.9
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 3.2e-16 89.0 51 74.5
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 3.2e-16 89.0 54 75.9
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 4.2e-16 88.6 51 74.5
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 5.5e-16 88.2 53 75.5
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 7.1e-16 87.8 51 74.5
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 9.3e-16 87.4 51 76.5
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 9.3e-16 87.4 51 78.4
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 9.3e-16 87.4 53 75.5
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 1.2e-15 87.0 51 74.5
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.6e-15 86.7 51 74.5
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.6e-15 86.7 53 71.7
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 1.6e-15 86.7 50 78.0
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.6e-15 86.7 51 74.5
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 3.5e-15 85.5 50 78.0
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 4.6e-15 85.1 51 72.5
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 4.6e-15 85.1 51 70.6
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 6.0e-15 84.7 52 73.1
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 6.0e-15 84.7 52 69.2
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.0e-14 84.0 53 69.8
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.3e-14 83.6 50 76.0
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.3e-14 83.6 49 73.5
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.3e-14 83.6 51 70.6
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 1.8e-14 83.2 53 69.8
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 1.8e-14 83.2 61 62.3
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.8e-14 83.2 53 69.8
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.8e-14 83.2 53 69.8
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 1.8e-14 83.2 62 59.7
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 1.8e-14 83.2 53 66.0
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.8e-14 83.2 69 55.1
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 2.3e-14 82.8 51 68.6
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 2.3e-14 82.8 62 59.7
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 3.0e-14 82.4 50 76.0
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 3.9e-14 82.0 50 74.0
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 3.9e-14 82.0 50 76.0
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 3.9e-14 82.0 50 74.0
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 5.1e-14 81.6 51 70.6
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 5.1e-14 81.6 50 74.0
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 5.1e-14 81.6 49 73.5
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 6.7e-14 81.3 50 76.0
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 8.7e-14 80.9 49 75.5
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 8.7e-14 80.9 49 75.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 8.7e-14 80.9 49 75.5
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 8.7e-14 80.9 53 73.6
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 1.1e-13 80.5 49 75.5
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.1e-13 80.5 51 66.7
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.1e-13 80.5 50 72.0
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.5e-13 80.1 51 66.7
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.5e-13 80.1 53 66.0
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 1.9e-13 79.7 47 74.5
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 1.9e-13 79.7 50 68.0
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.5e-13 79.3 51 68.6
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 2.5e-13 79.3 50 74.0
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 2.5e-13 79.3 50 72.0
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 2.5e-13 79.3 50 72.0
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 2.5e-13 79.3 50 72.0
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 2.5e-13 79.3 50 74.0
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 2.5e-13 79.3 48 68.8
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 5.7e-13 78.2 50 72.0
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 5.7e-13 78.2 50 68.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 9.6e-13 77.4 52 67.3
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 9.6e-13 77.4 51 66.7
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 1.3e-12 77.0 52 61.5
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 1.6e-12 76.6 49 67.3
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 6.3e-12 74.7 52 61.5
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 2.4e-11 72.8 45 71.1
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.7e-09 66.6 39 74.4
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 8.5e-09 64.3 50 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 1.1e-08 63.9 49 53.1


User provided reference genes

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