Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 3360.5 1835 100.0
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 0.0e+00 2573.1 2246 70.3
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 0.0e+00 1699.1 1710 59.4
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1456.4 1822 50.7
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1456.4 1822 50.7
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1151.0 1828 44.9
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1138.6 1821 44.3
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1120.1 1811 43.6
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1117.1 1791 43.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1110.5 1973 42.5
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1086.2 1949 43.9
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 3.3e-310 1069.3 1929 44.0
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 7.3e-302 1041.6 1804 42.3
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.1e-301 1038.1 1948 43.2
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.2e-300 1035.4 1948 42.9
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 1.4e-297 1027.3 1837 41.1
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 3.5e-296 1022.7 1838 40.6
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 2.8e-293 1013.1 1780 41.3
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 2.8e-293 1013.1 1778 41.3
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 7.8e-288 995.0 1839 40.1
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.0e-283 980.3 1865 40.3
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-280 969.9 1775 40.6
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 7.6e-275 951.8 1898 41.7
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 9.9e-275 951.4 1831 39.5
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.4e-273 946.8 1832 38.9
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 1.0e-271 941.4 1855 40.1
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 2.6e-267 926.8 1837 38.3
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 9.6e-262 908.3 1966 37.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.3e-257 891.7 1878 38.9
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 8.5e-250 868.6 1938 39.1
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.6e-248 864.4 1780 37.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.1e-248 862.4 1812 38.6
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 3.3e-246 856.7 1812 36.2
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 3.3e-246 856.7 1765 37.1
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 4.1e-244 849.7 1997 37.9
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 3.2e-241 840.1 1788 37.1
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 4.6e-240 836.3 1822 36.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 5.1e-239 832.8 1914 38.6
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.1e-239 832.8 1932 35.7
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 5.1e-239 832.8 1886 37.1
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.1e-238 831.6 1782 36.8
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 2.4e-236 823.9 1823 36.0
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 2.2e-234 817.4 1770 37.9
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 8.5e-234 815.5 1859 35.6
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 1.1e-233 815.1 1767 36.9
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 5.5e-233 812.8 1786 36.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.9e-232 808.9 1804 36.3
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 2.3e-231 807.4 1914 37.9
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 3.9e-231 806.6 1820 37.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 4.4e-230 803.1 1854 35.8
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 7.4e-230 802.4 1816 36.1
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 4.8e-229 799.7 1784 36.7
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 3.1e-228 797.0 1852 34.9
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 3.2e-225 786.9 1802 35.2
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 5.5e-225 786.2 1752 35.7
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 2.1e-224 784.3 726 76.4
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.3e-223 780.8 1870 34.4
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 3.3e-222 776.9 1405 40.8
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.7e-221 774.6 1863 34.7
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.2e-221 774.2 1853 34.5
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.2e-221 774.2 1920 36.6
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 3.1e-220 770.4 1867 34.4
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 4.5e-219 766.5 1797 36.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 7.7e-219 765.8 1853 34.3
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 9.4e-217 758.8 1818 34.9
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.7e-216 757.3 1813 35.0
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 2.3e-215 754.2 1751 36.4
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 2.0e-214 751.1 1876 36.3
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.5e-209 733.0 1759 34.6
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 4.5e-203 713.4 1792 33.5
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.0e-202 712.2 1760 35.3
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 7.3e-201 706.1 1768 33.9
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.3e-197 695.3 1670 36.5
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 8.3e-197 692.6 1207 39.4
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.5e-195 687.2 1871 35.8
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.1e-193 682.2 1766 33.3
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.7e-184 650.2 1808 32.0
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 4.9e-181 640.2 967 41.5
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.3e-173 615.5 1755 31.9
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 2.4e-159 568.2 1606 33.9
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.3e-157 562.4 1728 31.2
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-154 551.6 773 44.2
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 7.4e-153 546.6 1737 30.7
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.3e-146 525.0 1523 33.4
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 3.8e-141 507.7 1856 29.0
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 6.0e-139 500.4 934 40.6
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.3e-136 492.7 1090 37.9
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.1e-135 489.6 896 39.2
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 6.5e-133 480.3 863 37.5
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.4e-132 479.2 1514 32.2
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.4e-132 479.2 1514 32.2
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.3e-117 429.5 882 40.4
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 2.6e-113 415.2 1066 41.0
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.2e-108 398.3 439 47.6
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 8.8e-106 390.2 935 32.7
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 9.1e-103 380.2 636 46.1
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 2.8e-91 342.0 855 38.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 3.4e-89 335.1 1099 26.7
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-80 305.8 702 32.5
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.6e-77 293.9 977 33.0
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.6e-75 289.7 467 39.4
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 2.1e-75 289.3 670 33.3
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 3.1e-74 285.4 1138 26.5
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.6e-67 261.9 765 32.0
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.7e-64 253.1 429 42.2
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.7e-64 251.9 194 65.5
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 5.4e-63 248.1 1801 24.1
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 7.8e-62 244.2 1027 30.0
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 3.0e-61 242.3 234 55.6
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 3.9e-61 241.9 929 33.4
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 6.2e-59 234.6 244 51.6
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 8.1e-59 234.2 635 37.6
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 5.2e-58 231.5 526 33.5
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 8.9e-58 230.7 167 72.5
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.5e-57 229.9 1085 25.1
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.3e-53 216.9 202 56.4
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 2.3e-53 216.1 357 46.2
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 4.3e-52 211.8 233 46.4
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 4.9e-48 198.4 142 71.1
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 8.7e-45 187.6 183 52.5
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.9e-44 186.4 234 50.0
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.8e-42 179.9 781 35.2
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.0e-42 178.7 146 58.2
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 4.2e-39 168.7 199 47.7
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 3.5e-38 165.6 261 47.5
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 1.5e-36 160.2 688 32.1
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.7e-35 155.6 1010 27.1
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 4.2e-31 142.1 93 72.0
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 7.1e-31 141.4 132 53.0
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.8e-26 126.7 140 45.0
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.5e-25 123.6 166 41.0
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.9e-23 116.7 214 36.4
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 1.6e-22 113.6 80 67.5
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 1.5e-17 97.1 418 25.6
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.8e-16 92.4 127 37.0
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 8.5e-16 91.3 115 54.8
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.1e-14 86.7 65 61.5
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.9e-14 84.7 113 39.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.8e-13 83.6 68 58.8
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 3.0e-13 82.8 65 60.0
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-12 80.1 60 60.0
Cre07.g313500 Chlamydomonas reinhardtii HOM05D051285 ORTHO05D005117 4.3e-12 79.0 407 24.6
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 4.3e-12 79.0 487 32.4
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.8e-10 73.6 230 29.6
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-09 70.1 56 57.1
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 2.6e-09 69.7 118 35.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-08 67.0 49 61.2
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.1e-07 64.3 343 33.8
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 5.5e-07 62.0 70 50.0
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.6e-06 60.5 849 23.6
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 1.6e-06 60.5 355 27.6
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.1e-06 60.1 57 47.4
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 4.7e-06 58.9 59 55.9


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