Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.5e-124 449.5 221 100.0
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.7e-49 198.0 366 39.3
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 1.1e-42 177.6 104 82.7
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.4e-36 155.6 103 74.8
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 2.9e-35 152.9 103 70.9
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 1.8e-34 150.2 103 70.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 1.8e-34 150.2 103 71.8
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 7.0e-34 148.3 103 68.9
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 1.2e-33 147.5 296 34.8
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 1.6e-33 147.1 103 68.0
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 1.6e-33 147.1 103 68.9
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 4.6e-33 145.6 107 65.4
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 4.6e-33 145.6 103 67.0
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 3.9e-32 142.5 103 67.0
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 3.9e-32 142.5 103 68.0
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 3.9e-32 142.5 103 66.0
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 5.0e-32 142.1 103 68.0
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 6.6e-32 141.7 103 66.0
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 6.6e-32 141.7 103 66.0
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 6.6e-32 141.7 103 69.9
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 8.6e-32 141.4 103 66.0
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 1.1e-31 141.0 103 67.0
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 1.5e-31 140.6 103 66.0
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 3.3e-31 139.4 104 66.3
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 5.6e-31 138.7 103 68.0
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 5.6e-31 138.7 103 64.1
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 1.2e-30 137.5 103 64.1
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 6.2e-30 135.2 106 63.2
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 6.2e-30 135.2 106 63.2
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 6.2e-30 135.2 104 64.4
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 8.0e-30 134.8 103 65.0
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 1.4e-29 134.0 103 64.1
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 2.3e-29 133.3 108 62.0
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 6.8e-29 131.7 103 63.1
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 6.8e-29 131.7 103 64.1
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 6.8e-29 131.7 103 63.1
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 8.9e-29 131.3 103 64.1
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 1.2e-28 131.0 103 63.1
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 1.5e-28 130.6 103 62.1
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 2.0e-28 130.2 103 63.1
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 2.0e-28 130.2 103 65.0
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.6e-28 129.8 103 64.1
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 2.6e-28 129.8 103 64.1
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 2.6e-28 129.8 106 63.2
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 2.6e-28 129.8 106 63.2
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 2.6e-28 129.8 106 63.2
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 2.6e-28 129.8 103 62.1
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 3.4e-28 129.4 103 63.1
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 5.8e-28 128.6 106 62.3
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 5.8e-28 128.6 106 61.3
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 5.8e-28 128.6 106 62.3
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 7.5e-28 128.3 107 61.7
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 7.5e-28 128.3 103 60.2
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 7.5e-28 128.3 106 60.4
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 7.5e-28 128.3 103 59.2
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 1.3e-27 127.5 106 60.4
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 1.3e-27 127.5 107 62.6
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 1.3e-27 127.5 103 63.1
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 1.3e-27 127.5 103 63.1
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 1.3e-27 127.5 103 64.1
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 1.7e-27 127.1 103 61.2
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 2.2e-27 126.7 103 63.1
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 2.9e-27 126.3 106 58.5
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 2.9e-27 126.3 103 59.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 4.9e-27 125.6 104 61.5
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 6.4e-27 125.2 103 64.1
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 8.3e-27 124.8 106 60.4
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 8.3e-27 124.8 102 60.8
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 8.3e-27 124.8 103 64.1
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 1.1e-26 124.4 103 61.2
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 1.1e-26 124.4 106 60.4
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 1.1e-26 124.4 103 60.2
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 1.9e-26 123.6 106 60.4
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 1.9e-26 123.6 106 60.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 1.9e-26 123.6 106 60.4
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 2.4e-26 123.2 103 63.1
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 2.4e-26 123.2 103 60.2
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 3.2e-26 122.9 103 60.2
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 3.2e-26 122.9 102 61.8
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 3.2e-26 122.9 102 59.8
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 3.2e-26 122.9 102 59.8
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 4.1e-26 122.5 103 60.2
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 4.1e-26 122.5 106 59.4
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 4.1e-26 122.5 106 59.4
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 5.4e-26 122.1 103 59.2
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 9.2e-26 121.3 103 56.3
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.2e-25 120.9 103 59.2
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 1.2e-25 120.9 102 58.8
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 1.6e-25 120.6 104 57.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 2.0e-25 120.2 103 59.2
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.0e-25 120.2 102 58.8
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 2.0e-25 120.2 103 58.3
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 2.0e-25 120.2 103 58.3
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 2.7e-25 119.8 145 45.5
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 3.5e-25 119.4 103 58.3
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.0e-24 117.9 140 47.9
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 1.3e-24 117.5 103 58.3
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 3.0e-24 116.3 103 60.2
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.9e-23 113.6 104 54.8
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 3.3e-23 112.8 103 56.3
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.6e-22 110.5 102 55.9
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 9.8e-20 101.3 100 51.0
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 6.4e-19 98.6 160 40.0
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.1e-18 95.9 53 86.8
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-17 94.4 84 58.3
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 6.0e-17 92.0 106 45.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 5.1e-16 89.0 71 64.8
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 2.5e-15 86.7 107 44.9
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 2.2e-11 73.6 85 43.5
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 3.2e-10 69.7 48 70.8
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 2.7e-09 66.6 106 34.9
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 2.7e-09 66.6 51 64.7
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 7.3e-07 58.5 47 66.0
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 1.6e-06 57.4 74 41.9
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.7e-06 55.8 106 35.8


User provided reference genes

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